These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 872 fasta sequence [CAGAATTGNGCAGAGGTAAGACGAACGAACTGAAGTACGATCGAGATGC-GGAA-GTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGACCAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGCTCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGCTGGCAAACCGACGCCAGGTGCAGGCCACGTTCGCGGGCCAGCAGGGAACCGTG-TTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAATTCGGCCGAGCTGCGCTTTGGTCGGGCGGAGATCATTACCAATCTGGCCTGCCGGGTCAGCCTGCCGACGAACACGATCGGCGATGCGCACATGTGCACGGACGGGTCGGTCAGCTCGCCGTGTGCGGGCGATAATGGGGCACCGCTGACGATTGTGGACGCGGACGGCATCACGACGCAGGTCGGCGTGGTTTTCGTTCAACTCCGTGCTTGGGTGTGACGCTTGGACGTGCCCGCTTGCNTATACCCGGCTGTCGGGCCTACCTGGACTGGATCNGTGCCAACTCCGATGTGA] [+] EMBL AL697146 [CAGAATTGNGCAGAGGTAAGACGAACGAACTGAAGTACGATCGAGATGC GGAATGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGG GAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGA CAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGG TCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGG TGGCAAACCGACGCCAGGTGCAGGCCACGTTCGCGGGCCAGCAGGGAACCGTG TTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAATTCGGCCGAGCTGCGCT ] [+] EMBL BX626059 [ CGAGATGCTTGAA GTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGACCAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGCTCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGCTGCCAAACCGACGCCAGGTGCAGGCCACGTTCGCGGGCCAGCAGGGAACCGTGTTTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAATTCGGCCGAGCTGCGCTTTGGTCGGGCGGAGATCATTACCAATCTGGCCTGCCGGGTCAGCCTGCCGACGAACACGATCGGCGATGCGCACATGTGCACGGACGGGTCGGTCAGCTCGCCGTGTGCGGGCGATAATGGGGCACCGCTGACGATTGTGGACGCGGACGGCATCACGACGCAGGTCGGCGTGGTTTTCGTTCAACTCCGTGCTTGGGTGTGACGCTTGGACGTGCCCGCTTGCNTATACCCGGCTGTCGGGCCTACCTGGACTGGATCNGTGCCAACTCCGATGTGA] [+] EMBL BX628962 [ C GGAA GTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTCTGCGTTTGCCTACCTCGGAGGCCTGCGGGTGGACGACCAACCGGAGCAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGAGCTTTGTGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGCTCCCACGCTCTGTCAGCTTCAGCGATCGCATTCNCCCAATACAGCT ] consensusID : consensus_5267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CTCAGCAGAATTGGCCCCGAGGTTTAAACAGACGAACGAACTGAAGTACGATCGAGATGCGTGAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTACTGCGTTTGCCTACCTCGGAGGCCTGCGCGGTGGACGACCAACCGGAGACAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGACGCTTTGTAGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGNATCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGATGCCAAACCGACGCCAGGTGCAAGGGCACGTTACGCCGNGCCCAGCAAGCGAACCGGAGTAAGGGTGGGGCCCGGGTTCGGCTCGGGCCATTANGCAACTNCGGGACCGAAGCTTGCAGCTATATGGTNCNNGGCGCGCCGAATCATTAACCAATTCTTGGCCT] [+] EMBL AL697209 [CTCAGCAGAATTGGCCCCGAGGTTTAAACAGACGAACGAACTGAAGTACGATCGAGATGCGTGAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTCGTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCTCTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATCTTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCAACTATGTCCTCACGGCGGCGAGCTGCGTGCAGAGTGCCACGTACTGCGTTTGCCTACCTCGGAGGCCTGCGCGGTGGACGACCAACCGGAGACAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGACGCTTTGTAGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGNATCCCACGCTCTGTCAGCTTCAGCGATCGCATTCGCCCAATACGGATGCCAAACCGACGCCAGGTGCAAGGGCACGTTACGCCGNGCCCAGCAAGCGAACCGGAGTAAGGGTGGGGCCCGGGTTCGGCTCGGGCCATTANGCAACTNCGGGACCGAAGCTTGCAGCTATATGGTNCNNGGCGCGCCGAATCATTAACCAATTCTTGGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5267#0 -----CAGAATTGNGCA-GAGGTA-----AGACGAACGAACTGAAGTACGATCGAGATGC 49 consensus_5267#1 CTCAGCAGAATTGGCCCCGAGGTTTAAACAGACGAACGAACTGAAGTACGATCGAGATGC 60 ******** * ***** ******************************* consensus_5267#0 G-GAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTC 108 consensus_5267#1 GTGAAGTGCTCTCTGTTGTCGGTGCTGGTGCTGGTGGCAGCAGTCTGCGCCACGGAGGTC 120 * ********************************************************** consensus_5267#0 GTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCT 168 consensus_5267#1 GTAGGCATTCGTCCGGCGCTGCGCCAGGATGCCCCCCGGGGTCGCGTTGTTGGGGGAGCT 180 ************************************************************ consensus_5267#0 CTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATC 228 consensus_5267#1 CTCGCCACCGCTGGACAGTTCCCGTACGCCGTCGGGCTGGTAACGCACACCGGAGTCATC 240 ************************************************************ consensus_5267#0 TTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGCCAACTATGTCCTCACGGCGGCGAGC 288 consensus_5267#1 TTTACTGGGCGCTGTGCGGGCTCCCTCATTTCTGC-AACTATGTCCTCACGGCGGCGAGC 299 *********************************** ************************ consensus_5267#0 TGCGTGCAGAGTGCCACGT-CTGCGTTTGCCTACCTCGGAGGCCTGCG-GGTGGACGACC 346 consensus_5267#1 TGCGTGCAGAGTGCCACGTACTGCGTTTGCCTACCTCGGAGGCCTGCGCGGTGGACGACC 359 ******************* **************************** *********** consensus_5267#0 AACCGGAG-CAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGA-GCTT 404 consensus_5267#1 AACCGGAGACAGGGCCGCGAACGACTCCTGATCGAACGCTTCATCCTGCACACGACGCTT 419 ******** ********************************************** **** consensus_5267#0 TGT-GGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGC-TCCCACGCTCTGTCAGC 462 consensus_5267#1 TGTAGGAGGGGGGCGAAAACTTTGACGTTGCCCTGGGGCGGNATCCCACGCTCTGTCAGC 479 *** ************************************* ***************** consensus_5267#0 TTCAGCGATCGCATTCGCCCAATACGGCTGGCAAACCGACGCCAGGTGCA-GGCCACGTT 521 consensus_5267#1 TTCAGCGATCGCATTCGCCCAATACGGATGCCAAACCGACGCCAGGTGCAAGGGCACGTT 539 *************************** ** ******************* ** ****** consensus_5267#0 -CGCGGG--CCAGCAGG-GAACCGTGTTGGGTGGGGCCGGTTCGGCTCGGGCATTAGCAA 577 consensus_5267#1 ACGCCGNGCCCAGCAAGCGAACCGGAGTAAGGGTGG--GGCCCGGGTTCGGCTCGGGCCA 597 *** * ****** * ****** * * * ** ** *** * *** ** * consensus_5267#0 TTCGGCCGAGCTGCGCTTTGGTCGGGCGGAGATCATTACCAATCTGGCCTGCCGGGTCAG 637 consensus_5267#1 TTANGC--AACTNCG--------GGACCGAAGCTTGCAGCTATATGG--TNCNNGGCGCG 645 ** ** * ** ** ** * ** * * ** *** * * ** * consensus_5267#0 CCTGCCGACGAACACGATCGGCGATGCGCACATGTGCACGGACGGGTCGGTCAGCTCGCC 697 consensus_5267#1 CCGAATCATTAAC-CAATTCTTGGCCT--------------------------------- 671 ** * *** * ** * consensus_5267#0 GTGTGCGGGCGATAATGGGGCACCGCTGACGATTGTGGACGCGGACGGCATCACGACGCA 757 consensus_5267#1 ------------------------------------------------------------ consensus_5267#0 GGTCGGCGTGGTTTTCGTTCAACTCCGTGCTTGGGTGTGACGCTTGGACGTGCCCGCTTG 817 consensus_5267#1 ------------------------------------------------------------ consensus_5267#0 CNTATACCCGGCTGTCGGGCCTACCTGGACTGGATCNGTGCCAACTCCGATGTGA 872 consensus_5267#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||