These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1162 fasta sequence [CCCCAGGCNTTAATTGGCACGATTGTTATGTACACACACATTGAACAATACACGATTTCATTCGATGTTCATGCTATGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCACAAGTTCAGATGAATGTTAACGGCAAAAGAATAGAAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTCTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTTAATTGGGAGGAACAGACCG-CCGATCGTGTTGTGTTTACACACCCTTCACGAAGCGAACGGCAGTTACAGCAAGCATTATATACAATCCGGATATACAGGAAAGCAAACACAAGTTGTATAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTAATACATACAAAGTAACAGAACCGGCGTTAATATTCGTTGTACAATCGGTAGATTTCGTAAACGAACCGGACCAATCGCCAGATTAGTCTGTCTANCGCGGTCCCAGTTGAAAGCAACTGAGGGATGCACTAATCGAGGCAA-GGCATACAATGATACGGCCAATTATAGGTGAACGACGATAGCGCAACGCTTTCGTATATGCAGCCAAGAGAACAAGTGTCTATTAACCAAAATAATAACGGAACGTTAATGATTAGCTTTATTATGTGTGCTTCGACAAATGCAATCAGCTGTGGCAGCTAAAAAAGGCGTTTGGAAGAGAAAGAGGCGTACGGGGAAAGAGGTAGAACAAATCATTATTGAAACAGTCCAAGCTTAGTTTATCCACCGTACAATATGCAATACACGGGTAATGATTTCGCTAGTAATGTTTTAAACGTTATCATCAACACATGCTTAGCAGGCAAGAGAACAAAACTCATGAAACACCAATTCGTTCAGTATCCTGTGCTAAATTATCGTAAATGTGGGTGTTATCGTTTCTGGTAGCAAAGCTGACCCCTTTTTCTTTGAAAAAGAATTTTAACGACCAATAGTGGTTCAGGTTAATCATATAT] [+] EMBL AL697474 [CCCCAGGCNTTAATTGGCACGATTGTTATGTACACACACATTGAACAATACACGATTTCATTCGATGTTCATGCTATGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCACAAGTTCAGATGAATGTTAACGGCAAAAGAATAGAAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTCTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTTAATTGGGAGGAACAGACCG CCGATCGTGTTGTGTTTACACACCCTTCACGAAGCGAACGGCAGTTACAGCAAGCATTATATACAATCCGGATATACAGGAAAGCAAACACAAGTTGTATAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTAATACATACAAAGTAACAGAACCGGCGTTAATATTCGTTGTACAATCGGTAGATTTCGTAAACGAACCGGACCAATCGCCAGATTAGTCTGTCTANCGCGGTCCCAGTTGAAAGCAACTGAGGGATGCACTAATCGAGGCAA GGCATACAATGATAC ] [+] EMBL BX617043 [ GAAAACAAGACTTATCCGTAGTTCACTTTTTGTTACATTTTTTAATTGGGAGGAAGAAACCGCCCGATCGTGCTGTGTTTACACACCCTTCACGGAGCGAACGGCAATTACAGCAAGCATTATATACAATCCGGATATAAAGGAAAGCAAACACAAGTTGT TAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTACTACATACAAAGTAACAGAA CGGCGTTCATATTCGTTGTACAATCGGTAG TTTCGTAAACG ACCGGCCCAATCGCC GATTAGT TGTCTATCGCGGTCCCAGTTG AAGCAACT AGGGATGCACTAATCGAGGCAATGGCATACAATGATACGGCCAATTATAGGTGAACGACGATAGCGCAACGCTTTCGTATATGCAGCCAAGAGAACAAGTGTCTATTAACCAAAATAATAACGGAACGTTAATGATTAGCTTTATTATGTGTGCTTCGACAAATGCAATCAGCTGTGGCAGCTAAAAAAGGCGTTTGGAAGAGAAAGAGGCGTACGGGGAAAGAGGTAGAACAAATCATTATTGAAACAGTCCAAGCTTAGTTTATCCACCGTACAATATGCAATACACGGGTAATGATTTCGCTAGTAATGTTTTAAACGTTATCATCAACACATGCTTAGCAGGCAAGAGAACAAAACTCATGAAACACCAATTCGTTCAGTATCCTGTGCTAAATTATCGTAAATGTGGGTGTTATCGTTTCTGGTAGCAAAGCTGACCCCTTTTTCTTTGAAAAAGAATTTTAACGACCAATAGTGGTTCAGGTTAATCATATAT] consensusID : consensus_5268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [CCGAGGTTAACACATTGAACAAACACGATCCATACGATGTCATGCTATTGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCNACAAGTTCCGCATGAATGTTAACGGCCAAAGAATAGACAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTAATNTGGGAGGAACAGACGCCCGATACGTGTATGTGTTGTACACACCCTTCACGGACAGCGAACGGCAGTTACAGCCAAGCATTATATACACATCCGGGATATNAACAGGAAAGCCNAACCACAAGTTTGNCAGCTGTAGAAACAACTAGAGTCTCATCATACGCGAGCCGCGTAGCATTCAAGTTACGATAACAAGAAGGTAAACGAGGAAACGAGCGTNAAAGCTAATATTCCGGTATGGTACCAAANCGGGTACGTTTATCCGANAGAGCGAACCCGGGCCCCANATCGGCCAGNAACTNNCGCGTCTNGTCTCAGCCGCCGGCGGCCCCCANAGCATCNGACAACGCCANNCACTAGCACAGGCACTGCACCCAAATCCCACGGCCCACCNGGGCANTA] [+] EMBL AL933688 [CCGAGGTTAACACATTGAACAAACACGATCCATACGATGTCATGCTATTGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAATTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGTTAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCNACAAGTTCCGCATGAATGTTAACGGCCAAAGAATAGACAGAAAAAAACCAACGTATATCAAACGACGAATTTGACGGGGCGCTCAAAAGCGTCACGTACACACACACATATTTAACGATATCGAAAACAAGACTTATCCGTAGTTCACTAAGTGTTACATTTTTAATNTGGGAGGAACAGACGCCCGATACGTGTATGTGTTGTACACACCCTTCACGGACAGCGAACGGCAGTTACAGCCAAGCATTATATACACATCCGGGATATNAACAGGAAAGCCNAACCACAAGTTTGNCAGCTGTAGAAACAACTAGAGTCTCATCATACGCGAGCCGCGTAGCATTCAAGTTACGATAACAAGAAGGTAAACGAGGAAACGAGCGTNAAAGCTAATATTCCGGTATGGTACCAAANCGGGTACGTTTATCCGANAGAGCGAACCCGGGCCCCANATCGGCCAGNAACTNNCGCGTCTNGTCTCAGCCGCCGGCGGCCCCCANAGCATCNGACAACGCCANNCACTAGCACAGGCACTGCACCCAAATCCCACGGCCCACCNGGGCANTA] consensusID : consensus_5268#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CAACCNGGNGAAGAACATTACGCTCAGCAGATCGCCGCACGGTGNAAAACAATAATTTGCAATACTTTCGTTTAAATCATTCGAACTANGTGAGTGTATTTTACAGCGNCTACTGCACAAGTTCAGATGAATGTTAACGGCAAAAGAAGAGAAGAAAAAAACCAACATATATCAAACGACGCAATTTGCACGGGGCGCTCAAAAGCGTCACGTACACACACACACACACATATTTAACGATATCGNAAACAAGACTTATACCGTAGTTCACTAAGTGTAACATACTTACAACTCTGGGAGGACACAAAATCGAACCGAACTCGTGTCTGTGTTTACAACACACGCACCTTCACGAAGACGAACGGCCATGATTTCACCAGGCAAGACACTTATACTACCACATCCGCGCANATATACACGGCAACACAGCACAACACCAANAGATTTGTGCGTGTGACGGACACCCAA] [+] EMBL AL697181 [CAACCNGGNGAAGAACATTACGCTCAGCAGATCGCCGCACGGTGNAAAACAATAATTTGCAATACTTTCGTTTAAATCATTCGAACTANGTGAGTGTATTTTACAGCGNCTACTGCACAAGTTCAGATGAATGTTAACGGCAAAAGAAGAGAAGAAAAAAACCAACATATATCAAACGACGCAATTTGCACGGGGCGCTCAAAAGCGTCACGTACACACACACACACACATATTTAACGATATCGNAAACAAGACTTATACCGTAGTTCACTAAGTGTAACATACTTACAACTCTGGGAGGACACAAAATCGAACCGAACTCGTGTCTGTGTTTACAACACACGCACCTTCACGAAGACGAACGGCCATGATTTCACCAGGCAAGACACTTATACTACCACATCCGCGCANATATACACGGCAACACAGCACAACACCAANAGATTTGTGCGTGTGACGGACACCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5268#1 --------------------------CCGAGGTTAACACATTGAACAA-ACACGATC-CA 32 consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 CCCCAGGCNTTAATTGGCACGATTGTTATGTACACACACATTGAACAATACACGATTTCA 60 consensus_5268#1 TACGATGTCATGCTATTGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAA 92 consensus_5268#2 ---------------------------------------------CAACCNGGNGAAGAA 15 consensus_5268#0 TTCGATGTTCATGCTATGTTTTGTAATTTATTCTTTTTTCACTGGCAATTTGTTGTGAAA 120 *** * * ** consensus_5268#1 TTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGT 152 consensus_5268#2 CA--TTAC-GCTCAGCAGATCGCCGCACGGTGNAAAACAATAATTTGCAA-TACTTTCGT 71 consensus_5268#0 TTATTTGCTGCTAGACTAATTTGGGCAGCACGCAAAAAAATAATTTGCAAACAGTTTCGT 180 ** * *** * ** *** * **** ************ * ****** consensus_5268#1 TAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCGCNACAAGTTCCGCATGA 212 consensus_5268#2 TTAAATCATTCGAACTANGTGAGTGTATTTTACAGCGNCTACTGCACAAGTTCAG-ATGA 130 consensus_5268#0 TAAAATCATTCGAACTAAGTGAGTGTATTTTACAGCACTACCG-CACAAGTTCAG-ATGA 238 * *************** ****************** * ******** * **** consensus_5268#1 ATGTTAACGGCCAAAGAATAGACAGAAAAAAACCAACGTATATCAAACGACG-AATTTG- 270 consensus_5268#2 ATGTTAACGGCAAAAGAAGAGA-AGAAAAAAACCAACATATATCAAACGACGCAATTTGC 189 consensus_5268#0 ATGTTAACGGCAAAAGAATAGA-AGAAAAAAACCAACGTATATCAAACGACG-AATTTG- 295 *********** ****** *** ************** ************** ****** consensus_5268#1 ACGGGGCGCTCAAAAGCGTCACGTACACACA------CACATATT-TAACGATATCGAAA 323 consensus_5268#2 ACGGGGCGCTCAAAAGCGTCACGTACACACACACACACACATATT-TAACGATATCGNAA 248 consensus_5268#0 ACGGGGCGCTCAAAAGCGTCACGTACACACA------CACATATTCTAACGATATCGAAA 349 ******************************* ******** *********** ** consensus_5268#1 ACAAGACTTAT-CCGTAGTTCACTAAGTGTTACATTTTTA--ATNTGGGAGGAACAGACG 380 consensus_5268#2 ACAAGACTTATACCGTAGTTCACTAAGTGTAACATACTTACAACTCTGGGAGGACACAAA 308 consensus_5268#0 ACAAGACTTAT-CCGTAGTTCACTAAGTGTTACATTTTTT--AATTGGGAGGAACAGACC 406 *********** ****************** **** ** * ** * *** * consensus_5268#1 CCCGATACGTGTATGTGT-TGTACACACCCTTCACGGACAGCGAACGGCAGTTACAGCCA 439 consensus_5268#2 ATCGAACCGAACTCGTGTCTGTGTTTACAACACACGCACCTTCA----CGAAGACGAACG 364 consensus_5268#0 GCCGAT-CGTGT---TGTGTTTACACACCCTTCACGAA--GCGAACGGCAGTTACAG-CA 459 *** ** *** * * ** **** * * * ** * consensus_5268#1 AGCATTATATACACATCCGGGATATNAACAGGAAAGCCNAACCACAAGTTTGN-CAGCTG 498 consensus_5268#2 GCCATGATTTCACCAGGCAAGACACTTATACTACCACATCCGCGCANATATACACGGCAA 424 consensus_5268#0 AGCATTATATA--CAATCCGGATAT--ACAGGAAAGCAAA--CACAAGT-TGT------A 506 *** ** * ** * ** * * * * * * ** * * consensus_5268#1 TAGAA-ACAACTAGAGTCTCATCATACGCGAGCCGCGTAG--CATTCAAGTTACGATAAC 555 consensus_5268#2 CACAGCACAACACCAANAGATTTGTGCGTGTGACG---GA--CACCCAA----------- 468 consensus_5268#0 TAGTGTAGAACAATAATCTAATCATACGCGCGCTAGCTAATACATACAAAGTAACAGAAC 566 * * *** * * * ** * * ** *** consensus_5268#1 AAG-----AAGGTAAACGAGGAAACGAGCGTNAAAGCTAATATTCCGGTATGGTACCAAA 610 consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 CGGCGTTAATATTCGTTGTACAATCGGTAGATTTCGTAAACGAACCGGACCAATCGCCAG 626 consensus_5268#1 NCGGGTACGTTTATC-------CGANAGAGCGAACCCGGGCCCCANATCGGCCAGNAACT 663 consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 ATTAGTCTGTCTANCGCGGTCCCAGTTGAAAGCAACTGAGGGATGCACTAATCGAGGCAA 686 consensus_5268#1 NNCGCGTCTNGTCTCAGCCGCCGGCGGCCCCCANAGCATCNGACAACGCCANNCACTAGC 723 consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 GGCATACAATGATACGGCCAATTATAGGTGAACGACGATAGCGCAACGCT-TTCGTATAT 745 consensus_5268#1 ACAGGCACTGCACCCAAATCCCACGGCCCACCNGGGCANTA------------------- 764 consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 GCAGCCAAGAGAACAAGTGTCTATTAACCAAAATAATAACGGAACGTTAATGATTAGCTT 805 consensus_5268#1 ------------------------------------------------------------ consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 TATTATGTGTGCTTCGACAAATGCAATCAGCTGTGGCAGCTAAAAAAGGCGTTTGGAAGA 865 consensus_5268#1 ------------------------------------------------------------ consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 GAAAGAGGCGTACGGGGAAAGAGGTAGAACAAATCATTATTGAAACAGTCCAAGCTTAGT 925 consensus_5268#1 ------------------------------------------------------------ consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 TTATCCACCGTACAATATGCAATACACGGGTAATGATTTCGCTAGTAATGTTTTAAACGT 985 consensus_5268#1 ------------------------------------------------------------ consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 TATCATCAACACATGCTTAGCAGGCAAGAGAACAAAACTCATGAAACACCAATTCGTTCA 1045 consensus_5268#1 ------------------------------------------------------------ consensus_5268#2 ------------------------------------------------------------ consensus_5268#0 GTATCCTGTGCTAAATTATCGTAAATGTGGGTGTTATCGTTTCTGGTAGCAAAGCTGACC 1105 consensus_5268#1 --------------------------------------------------------- consensus_5268#2 --------------------------------------------------------- consensus_5268#0 CCTTTTTCTTTGAAAAAGAATTTTAACGACCAATAGTGGTTCAGGTTAATCATATAT 1162 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||