These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence [CGCAGGTTATCTGAACACTCCGCACACTTTTTTCCTTTAAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACAGTATGAACCATCACAAAGCCCAATGCCTTTCCTGATAGTGTACTGAATGTGGCTCGAGTAAATGTGTAAACTGCTGCAATTAAACATGCAGCAACGAAATGTTCTGTATTTGTGCCNGAGCTGCAAGTGACAACTGTGCGGATAAGCTGCCGGAGCTGTTCTGGTTTTGAAGCTACCAGAAGCGCATCAAAGNGATGAAATCAACAGCACACAGTTCAGCCAAATCAAAGTGTCCTCCTTAATTGTTGGGTCTATTTGCATACTGCACCCTGGAAAAGCACCATCTGTTACAGCCTTGGCGCGATNTCCAATCCATTACNTTGCCCTGGGNGCATGNGCCGCTTNTCCCGAAGAACCNGCAGTGGTTAAAAACTNTCCCCGTCGTCACCATATCCGGTTCCTTTCCCTGGGCNCCCATTGCATTTGCGGGGGGACTTGTTTGGATCCACCGGGGGCCAAGAATTACCAGCCAGGCATTGTCCAGGCCTGCGGTGAACACGTGGCGTACCNACCCANTTTAAAACNGGCTTATTGGGGGACTATATCNGTAATANCTCGGACCAGGCAGCACATTTTATACNTTACCATTAAGCCCAAACCCTGGCTACCCTGGGNGACCCATTGGGCTAAAGAGCGAATTNCCCGCCATTACCCCCCGGGGTACACCACGCAGTGGCAAGTCGGNCTGGTGAAGAAACAATGNGGCGCCTTAGGGAGGCTTAGGGGNTTTCGAGGATGTGGAAACGGGTATAAACCTCCCACCTGGTCGCTTAACCCCGGAAAGAGGGACCAACTGAGGGGGATNTAAACGAACCCGAATACTAGGGACTAAAAACCGGAAATTACCACTCTAGGGTTAAAGACGCCATTTGGGGGGANACCCCACTTTATATGGGGGAGANGGACACNAAAACACAACAATTTCTAAACACCAGGGTTATATTATCCACGGGCNCGNCTATTGTGTTACACCAGGAACANAAGCCTAGGACAAAAGCAGGGGANGGNGACTTCACAGACAGGANCAAGGACGGGCAACAAACAAAAGGAGCACGTTACCCAAAACCGCCNCGGGGAAAATAGCCAGGGGAGCGAANAAGCACCCACCACACNNCGGAGTGGAAAAACCACCCCCAACAAGGAGGGCAACAGCAGNGAGATCAAACAACACGGGGGTGAGTCCACNNAAACAAGGGAGCGATNACCANGAGAAAAACCCCAGGGGCGGAGCATATGTGGACCCAGGCAAACGGGCNAACAACAGGGNGATATACACACCGAACAAGACTGGCAGAGAANTAGGACACCCACNGTGTGAATTATCNNCNCCCCCCAAACNGATAGATGANTGNGACCACAAACATGGGGTACAAAAAAAATGGGGCCCAAAANNATGATGCATA] [+] EMBL AL697309 [CGCAGGTTATCTGAACACTCCGCACACTTTTTTCCTTTAAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACAGTATGAACCATCACAAAGCCCAATGCCTTTCCTGATAGTGTACTGAATGTGGCTCGAGTAAATGTGTAAACTGCTGCAATTAAACATGCAGCAACGAAATGTTCTGTATTTGTGCCNGAGCTGCAAGTGACAACTGTGCGGATAAGCTGCCGGAGCTGTTCTGGTTTTGAAGCTACCAGAAGCGCATCAAAGNGATGAAATCAACAGCACACAGTTCAGCCAAATCAAAGTGTCCTCCTTAATTGTTGGGTCTATTTGCATACTGCACCCTGGAAAAGCACCATCTGTTACAGCCTTGGCGCGATNTCCAATCCATTACNTTGCCCTGGGNGCATGNGCCGCTTNTCCCGAAGAACCNGCAGTGGTTAAAAACTNTCCCCGTCGTCACCATATCCGGTTCCTTTCCCTGGGCNCCCATTGCATTTGCGGGGGGACTTGTTTGGATCCACCGGGGGCCAAGAATTACCAGCCAGGCATTGTCCAGGCCTGCGGTGAACACGTGGCGTACCNACCCANTTTAAAACNGGCTTATTGGGGGACTATATCNGTAATANCTCGGACCAGGCAGCACATTTTATACNTTACCATTAAGCCCAAACCCTGGCTACCCTGGGNGACCCATTGGGCTAAAGAGCGAATTNCCCGCCATTACCCCCCGGGGTACACCACGCAGTGGCAAGTCGGNCTGGTGAAGAAACAATGNGGCGCCTTAGGGAGGCTTAGGGGNTTTCGAGGATGTGGAAACGGGTATAAACCTCCCACCTGGTCGCTTAACCCCGGAAAGAGGGACCAACTGAGGGGGATNTAAACGAACCCGAATACTAGGGACTAAAAACCGGAAATTACCACTCTAGGGTTAAAGACGCCATTTGGGGGGANACCCCACTTTATATGGGGGAGANGGACACNAAAACACAACAATTTCTAAACACCAGGGTTATATTATCCACGGGCNCGNCTATTGTGTTACACCAGGAACANAAGCCTAGGACAAAAGCAGGGGANGGNGACTTCACAGACAGGANCAAGGACGGGCAACAAACAAAAGGAGCACGTTACCCAAAACCGCCNCGGGGAAAATAGCCAGGGGAGCGAANAAGCACCCACCACACNNCGGAGTGGAAAAACCACCCCCAACAAGGAGGGCAACAGCAGNGAGATCAAACAACACGGGGGTGAGTCCACNNAAACAAGGGAGCGATNACCANGAGAAAAACCCCAGGGGCGGAGCATATGTGGACCCAGGCAAACGGGCNAACAACAGGGNGATATACACACCGAACAAGACTGGCAGAGAANTAGGACACCCACNGTGTGAATTATCNNCNCCCCCCAAACNGATAGATGANTGNGACCACAAACATGGGGTACAAAAAAAATGGGGCCCAAAANNATGATGCATA] consensusID : consensus_5272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1025 fasta sequence [CTGGATTTTGTAAACAAACGTGTGCTGATCCGAACGAACCGCACACATTTTTCCCTTTAGAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACTGTATGAACCATCACAAAGCCCAAGCCTTTCCGATAGTGTACTGAATGTGGCTCGAGTAAAGTGTAAACGCGCAATTAAACAGCAGCAACGAAATGTTCGTATTGGCCGAGCTGAAGGACAACGTGCGGATAGCGCCGGAGCTGTTTGGTTTGAAGCTACCAGAAGCGATAAAGGATGAAATCAACAGAAAGTTAGCAAATAAGGTCCTCCTAAATGTGGGTCTTTGCATCGCCCTGAAAGACATCGTTAAGCTGGGCGATTCAATCATACTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGTACATCGTCTTCCGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGGGAAGGCGTCCACATAACGCTTGGCTTTTTCGACGACATTCTCATACCACCGTCCGCCCTGCAGCATCCCTCCCGGTACGAGGAGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCGAGGACGGTAACACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCGACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTGGGGCTGCTTTCCTGGTGGGTACAGCAGGCCCAGGAAGAGGACGAGGAGGGCGGCGAAGAGGAGGAGCAGGAGGAGGAAGAGCAGGAACAGGATTCGGGGGGAGAGAATGAATAAAACCTACTTACCGTTAAAAGCTCGATTTATCATAAAAAAACAGG-AAAAACAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTT] [+] EMBL CNS09DKV [CTGGATTTTGTAAACAAACGTGTGCTGATCCGAACGAACCGCACACATTTTTCCCTTTAGAAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACTGTATGAACCATCACAAAGCCCAAGCCTTTCCGATAGTGTACTGAATGTGGCTCGAGTAAAGTGTAAACGCGCAATTAAACAGCAGCAACGAAATGTTCGTATTGGCCGAGCTGAAGGACAACGTGCGGATAGCGCCGGAGCTGTTTGGTTTGAAGCTACCAGAAGCGATAAAGGATGAAATCAACAGAAAGTTAGCAAATAAGGTCCTCCTAAATGTGGGTCTTTGCATCGCCCTGAAAGACATCGTTAAGCTGGGCGATTCAATCATACTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGTACATCGTCTTCCGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGGGAAGGCGTCCACATAACGCTTGGCTTTTTCGACGACATTCTCATACCACCGTCCGCCCTGCAGCATCCCTCCCGGTACGAGGAGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCGAGGACGGTAATACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCGACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTGGGGCTGCTTTCCTGGTGGGTACAGCAGGCCCAGGAAGAGGACGAGGAGGGCGGCGAAGAGGAGGAGCAGGAGGAGGAAGAGCAGGAACAGGATTCGGGGGGAGAGAATGAATAAAACCTACTTACCGTTAAAAGCTCGATTTATCATAAAAAAACAGG AAAAACAACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTT] [+] EMBL BX612279 [ ATAGTGTACTGAATGTGGCTCGAGTAAAGTGTAAACGCGCAATTAAACAGCAGCAACGAAATGTTCGTATTGGCCGAGCTGAAGGACAACGTGCGGATAGCGCCGGAGCTGTTTGGTTTGAAGCTACCAGAAGCGATAAAGGATGAAATCAACAGAAAGTTAGCAAATAATGTCCTCCTAAATGTGGGTCTTTGCATCGCCCTGAAAGACATC TTAAGCTGGGCGATTCAATCATACTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGTACATCGTCTTCCGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGGGAAGGCGTCCACATAACGCTTGGCTTTTTCGACGACATTCTCATACCACCGTCCGCCCTGCAGCATCCCTCCCGGTACGAGGAGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCGAGGACGGTAACACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCTACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTG ] [-] EMBL CNS09DKW [ GAGGACGGTAAAACGCACGATCTGTAAATGGAAATTGGGGAAAAAATAAAGTTTCGCGTTTCGGGCGAGGTGTTTGAGGAAAGCTCACCGATTGGACCCCCGGACCAGGAGGTACCGTCCAGCTCGACCGGTGCGAGTACGTCCGGTGGTGCCGGTTCCAGTGGGCAGGAAAGCAATAAGACACCGTACCGTATCGTAGCGGCCATTAACGAGTCCGGTTTGGGGCTGCTTTCCTGGTGGGTACAGCAGGCCCAGGAAGAGGACGAGGAGGGCGGCGAAGAGGAGGAGCAGGAGGAGGAAGAGCAGGAACAGGATTCGGGGGGAGAGAATGAATAAAACCTACTTACCGTTAAAAGCTCGATTTTTCATAAAAAAACAGGAAAAAACAACCGAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5272#0 ------------------CGCAGGTT-ATCTGAACACTCCGCACACTTTTTTCCTTT--A 39 consensus_5272#1 CTGGATTTTGTAAACAAACGTGTGCTGATCCGAACGAACCGCACACATTTTTCCCTTTAG 60 ** * * *** **** ******** ******* ** consensus_5272#0 AAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACAGTATGAACCATCACAAAGCC 99 consensus_5272#1 AAAAGCAGTTTTTATTGAAATAAACCATTCCCTTTTAACTGTATGAACCATCACAAAGCC 120 *************************************** ******************** consensus_5272#0 CAATGCCTTTCCTGATAGTGTACTGAATGTGGCTCGAGTAAATGTGTAAACTGCTGCAAT 159 consensus_5272#1 CAA-GCCTTTCC-GATAGTGTACTGAATGTGGCTCGAGTAAA-GTGTAAAC--GCGCAAT 175 *** ******** ***************************** ******** ***** consensus_5272#0 TAAACATGCAGCAACGAAATGTTCTGTATTTGTGCCNGAGCTGCAAGTGACAACTGTGCG 219 consensus_5272#1 TAAACA-GCAGCAACGAAATGTTC-GTATTGG---CCGAGCTGAAGG--ACAAC-GTGCG 227 ****** ***************** ***** * * ****** * * ***** ***** consensus_5272#0 GATAAGCTGCCGGAGCTGTTCTGGTTTTGAAGCTACCAGAAGCGCATCAAAGNGATGAAA 279 consensus_5272#1 GATAG--CGCCGGAGCTGTTTGG--TTTGAAGCTACCAGAAGCG-AT--AAAGGATGAAA 280 **** ************ * ******************* ** ** ******* consensus_5272#0 TCAACAGCACACAGTTCAGCCAAATCAAAGTGTCCTCCTTAATTGTTGGGTCTATTTGCA 339 consensus_5272#1 TCAACAGAA---AGTTAG--CAAATAAG---GTCCTCCTAAATG--TGGGTCT--TTGCA 328 ******* * **** ***** * ******** *** ******* ***** consensus_5272#0 TACTGCACCCTGGAAAAGCACCATCTGTTACAGCCTTGGCGCGATNTCCAATCCATTACN 399 consensus_5272#1 T----CGCCCTG-AAAGACATCGTT------AAGCTGGGCG----ATTCAATC----ATA 369 * * ***** *** ** * * * ** **** * ***** * consensus_5272#0 TTGCCCTGGGNGCATGNGCCGCTTNTCCCGAAGAACCNGCAGTGGTTAAAAACTNTCCCC 459 consensus_5272#1 CTGCCCGGCGATGGCGCTTCCCACACCGAGGTAAACTTCCGGT------ACATCGTCTTC 423 ***** * * * * * * * *** * ** * * ** * consensus_5272#0 GTCGTCACCATATCCGGTTCCTTTCCCTGGGCNCCCATTGCATTTGCGGGGGGACTTGTT 519 consensus_5272#1 --CGCCCCATGATTGGGGATGTGATCACGGGCAAGATACGCAGCTGCAGCCGG----GAA 477 ** * * ** ** * * **** *** *** * ** * consensus_5272#0 TGGATCCACCGGGGGCCAAGAATTACCAGCCAGGCATTGTCCAGGCCTGCGGTGAACACG 579 consensus_5272#1 GGCGTCCACATAACGCTTGGCTTTTTCGAC--GACATTCTC-ATACCACCGTCCGCCCTG 534 * ***** ** * ** * * * **** ** * ** ** * * consensus_5272#0 TGGCGTACCNACCCANTTTAAAACNGGCTTATTGGGG--GACTATATCNGTAATANCTCG 637 consensus_5272#1 CAGCATCCCT-CCCGGTACGAGG-AGGCGGAACAGGCCTGGGTGTGGGAGTACCCGCTCG 592 ** * ** *** * * *** * ** * * * *** **** consensus_5272#0 GACCAGGCAGCACAT----TTTATACNTTACCATTAAGCCCAAACCCTGGCTACCCTGGG 693 consensus_5272#1 AGGACGGTAACACGCACGATCTGTACATGGACATTGGGGAAAACATAAAGTTTCGCGTGT 652 ** * *** * * *** * **** * ** * * * * * consensus_5272#0 NGACCCATTGGGCTAAAGAGCGAATTNCCCGCCATTACCCCCCGGGGTACACCACGCAGT 753 consensus_5272#1 CGGGCGAGGTGTTTGAGGA--AAGCTCACCG--ATTGGACCCCCGGAC-CAGGAGGTACC 707 * * * * * * ** * * *** *** **** ** ** * * * consensus_5272#0 GGCAAGTCGGNCTGGTGAAGAAACAATGNGGCGCCTTAGGGAGGCTTAGGGGNTTTCGAG 813 consensus_5272#1 GTCCAGCTCGACCGGTGCGAGTACG---------TCCGGTGGTGCC-----GGTTCCAGT 753 * * ** * * **** ** * * ** * ** * consensus_5272#0 GATGTGGAAACGGGTATAAACCTCCCACCTGGTCGCTTAACCCCGGAAAGAGGGACCAAC 873 consensus_5272#1 GGGCAGGAAAGCAATA-AGACACCGTACCGTATCG--TAGCGGCCATTAACGAGTCCGGT 810 * ***** ** * ** * *** *** ** * * * * * ** consensus_5272#0 TGAGGGGGATNTAAACGAACCCGAATACTAGGGACTAAAAACCGGAAATTACCACTCTAG 933 consensus_5272#1 TTGGGGCTGCTTTCCTGG---TGGGTACAGCAGGCCCAGGA----AGAGGACGAGGAGGG 863 * *** * * * *** * * * * * * ** * * consensus_5272#0 GGTTAAAGACGCCATTTGGGGGGANACCCCACTTTATATGGGGGAGANGGACACNAAAAC 993 consensus_5272#1 CGGCGAAGAGGAGGAGCAGGAGGAGG---------AAGAGCAGGAACAGGATTCGGGGGG 914 * **** * ** *** * * *** *** * consensus_5272#0 ACAACAATTTCTAAACACCAGGGTTATATTATCCACGGGCNCGNCTATTGTGTTACACCA 1053 consensus_5272#1 A-GAGAATGAATAAAACCTA----CTTACCGTTAAAAGCTCGATTTATCATAAAAAAACA 969 * * *** **** * * ** * * * *** * * * ** consensus_5272#0 GGAACANAAGCCTAGGACAAAAGCAGGGGANGGNGACTTCACAGACAGGANCAAGGACGG 1113 consensus_5272#1 GGAAAAACAACCGAAAAAAAAAAAAAAAAAAAAAAAA---AAAAAAAAGGCCAAATGTT- 1025 **** * * ** * * **** * * * * * * * * *** consensus_5272#0 GCAACAAACAAAAGGAGCACGTTACCCAAAACCGCCNCGGGGAAAATAGCCAGGGGAGCG 1173 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 AANAAGCACCCACCACACNNCGGAGTGGAAAAACCACCCCCAACAAGGAGGGCAACAGCA 1233 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 GNGAGATCAAACAACACGGGGGTGAGTCCACNNAAACAAGGGAGCGATNACCANGAGAAA 1293 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 AACCCCAGGGGCGGAGCATATGTGGACCCAGGCAAACGGGCNAACAACAGGGNGATATAC 1353 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 ACACCGAACAAGACTGGCAGAGAANTAGGACACCCACNGTGTGAATTATCNNCNCCCCCC 1413 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 AAACNGATAGATGANTGNGACCACAAACATGGGGTACAAAAAAAATGGGGCCCAAAANNA 1473 consensus_5272#1 ------------------------------------------------------------ consensus_5272#0 TGATGCATA 1482 consensus_5272#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||