These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence [CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAACAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTATAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGAAACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAACATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAAACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTTGAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGTAGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATGTGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCCACTAATAAATTAGCTCAGCTACACACTCTCTCACAC] [+] EMBL BM637268 [CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAACAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTATAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGAAACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAACATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAAACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTTGAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGTAGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATGTGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCT ] [+] EMBL BM631173 [ ccgAAACGAGAAAAAGGCGAAACAAAGATACAAAACTCAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTTGAAACCGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGTAGTGCAACTGGGGTAAGAGCCGACGGCAAGGCGAGAGCAGACGGGAAGTAGTGTTGTGTGTGTCTGCGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCCAAGTCCGTAGCAGTACTAGTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCCACTAATAAATTAGCTCAGCTACACACTCTCTCACAC] consensusID : consensus_5277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTGTGAGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCATTAGTAGCAGTAGTAGGTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCAGAATAAAAAAACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCACACCGCAACCCCCGGGGCCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT] [+] EMBL BX617626 [GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTGTGAGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGTTCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTCCAGTCTAAGTCCGTAGCAGTACTAGTAGCATTAGTAGCAGTAGTAGGTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATTGCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCAGAATAAAAAAACACACACAGTCCTTTTCTTTTGTAGTAGTTTTGCGCAAACGAAAAACGCCTCAGCAGTTACGTTTGCCGCAACAAACAAACAAACAAACCTACACACACACACAGTGATACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAAAAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCACACCGCAACCCCCGGGGCCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT] consensusID : consensus_5277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [CCCCAGGCTNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGNGTGTCGACNAAGAGGAANGGGAACAGCAACTTAAGTATACTTAAGAAGAACAACTAAAGCGGTCAGCCAGCGCAATTGAGCGCGAGAGCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTTGGGGAAACAAAATTAAACAAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGGCACACCAACACTCNACAACACACCGCGGCGGGGGGGTTTTAACAAAACACACACCCAAAAAAACCCACNTTTGGGGGNNACGGGCAANANAACACCACACCACGGGGGGACNCGGGCCAAACAACAACNC] [+] EMBL AL697455 [CCCCAGGCTNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACATAGCGAACGAATCGAACCAGAAGAAAAGAAGGNGTGTCGACNAAGAGGAANGGGAACAGCAACTTAAGTATACTTAAGAAGAACAACTAAAGCGGTCAGCCAGCGCAATTGAGCGCGAGAGCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTTGGGGAAACAAAATTAAACAAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGGCACACCAACACTCNACAACACACCGCGGCGGGGGGGTTTTAACAAAACACACACCCAAAAAAACCCACNTTTGGGGGNNACGGGCAANANAACACCACACCACGGGGGGACNCGGGCCAAACAACAACNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5277#0 CCGGGACGTGCTAAGCTGGGTGATAAAGGAAAGGAAAACACACACACACACATTCGCGAA 60 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 CAATTACACGGGATATAAAGTGGAGGGACAGGGGAACATAGGCGTAGTAACATAGCGAAC 120 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 GAATCGAACCAGAAGAAAAGAAGGAGTGTAGAAAAAGAGGAAAGGGAAAGCAATTAAGTA 180 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 TAACTTAAGAAGAACAACTAAAGCGGTAGCAGCGAATGAGGGAGAGATTTGCAAAAAAGA 240 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 AACAAAAGGCAAACGAAGTGGAAAAATAACAACCACAATAGCAAAGGAAAGGTAAACAAA 300 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 CATTGGAGAAAAAAGGAGAAAATCAAATCAATTAGAAAATAAAAACGAGAAAAAGGCGAA 360 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 ACAAAGATACAAAACTAAAACTAAAAACGACGTGGGAGCAAGAGAAACATAAAGCCATTT 420 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 GAAACAGAACTCTCACTTTCTCTCTCACTCTCTATCTCAGTAGCGGTGTAGTGGTGTAGT 480 consensus_5277#1 ------------------------------------------------------------ consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 AGTGCAACTGGGGTAAGAGCCAACGGAAAGGCGAGAGAAGACGGGAAGAAATGTTGTATG 540 consensus_5277#1 ------------------------GGTAAGGCGAGAGCAGACGGGAAGAAGTGTTGTGTG 36 consensus_5277#2 ------------------------------------------------------------ consensus_5277#0 TG--TCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGT 598 consensus_5277#1 TGAGTCTGAGGGGCGGGGCGCAAAATGGCGGGCGAAGGCGTTTATTAGTTCGTGTTGCGT 96 consensus_5277#2 ----------------------------------------------------CCCCAGGC 8 * consensus_5277#0 TCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTC-CAGTCTAAGTCCGTAGCAGTA 657 consensus_5277#1 TCTTCAATTTATGTGTCGCGTCTAATTCGAGATTTTTC-CAGTCTAAGTCCGTAGCAGTA 155 consensus_5277#2 TNACAATTACACGGGATATAAATGGAGGGACAGGGAACATAGGCGTAGTACATAGCGA-A 67 * * * * * * * ** * * ** * *** * **** * consensus_5277#0 CTAGTAGCAGTAGTAGCAGTAGTAGGTGATGGAGAGAGGAGAGATGGTGTGTTTGCGATT 717 consensus_5277#1 CTAGTAGCATTAGTAGCAGTAGTAGGTGATGCAGAGAGGGGTGATGGTGTGTTTGCGATT 215 consensus_5277#2 CGAATCGAACCAGAAG-AAAAGAAGGNGTGTCGACNAAGAGGAANGGGA-----ACAGCA 121 * * * * * ** ** * ** *** * * * * * ** * consensus_5277#0 GCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCTGAATAAAAACACACACA 777 consensus_5277#1 GCAGAGCTGTAATTAAGAGAATCAAAATTACAAAAAAGAAGCAGAATAAAAAAACACACA 275 consensus_5277#2 ACTTAAGTATACTTAAGAAGAACA--ACTAAAGCGGTCAGCCAGCGCAATTGAGCGCG-A 178 * * * ** ****** * ** * ** * * * * ** * * * consensus_5277#0 CAGTCCTTTTCTTTTGTAGTAGTTT-TGCGCAAACGAAAAACGCGCGGGCGCGCGCCTCA 836 consensus_5277#1 CAGTCCTTTTCTTTTGTAGTAGTTT-TGCGCAAACGAAAAACGC------------CTCA 322 consensus_5277#2 GAGCATTTGCCACACAAAGAAACAAATAGGCAAACGAAAAGGTT-------------GGG 225 ** ** * ** * * *********** consensus_5277#0 GCAGTTACGTTTGCCGCAAC--AAACAAACAAACAAACCTACACACACACACAC-AGTGA 893 consensus_5277#1 GCAGTTACGTTTGCCGCAAC--AAACAAACAAACAAACCTACACACACACAC---AGTGA 377 consensus_5277#2 GAAACAAAATTAAACAAAACCCAACCAAATTAAAGGGCCCCCACACAACAACGGGGGGGG 285 * * * ** * *** ** **** ** ** ****** ** * * consensus_5277#0 TACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAA 953 consensus_5277#1 TACAACAGCTGCTCTCTCGCTCTCTCTTGTAGGACAAAAGCAAGCAAGCCCAGCAAGCAA 437 consensus_5277#2 CACACCAAC-ACTCNACAACACACCGCGGCGGGGGGGTTTTAACAAAACACA--CACCCA 342 *** ** * *** * * * * ** ** ** * ** * * * consensus_5277#0 AAGAAATCCACTAATA-AATTAGCTCAGCTACACACTCTCTCACAC-------------- 998 consensus_5277#1 AAGAAATCAACTAATATAATTAGCTCAGCTACACACTCTCTCACACCGCAACCCCCGGGG 497 consensus_5277#2 AAAAAACCCACNTTTGGGGGNNACG-GGCAANANAACACCACACCACGGGGGGACNCGGG 401 ** *** * ** * * ** * * * * *** consensus_5277#0 -------------------------------------- consensus_5277#1 CCGACCGCCGTCGAACGGTTGGCGGTGGAGGGGAAGGT 535 consensus_5277#2 CCAAACAACAACNC------------------------ 415 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||