These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 614 fasta sequence [CCGCGCATCAAAAGCAATCGATTCCAACAAGTCTGTTGTCTGATAGTTCGTAGAAAGATAGCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCACCATGTTGCAGGACTGCGACTATGACTACTTCTACGAGGAGGATAAAATGGGTATGACCGTCAGCTCTGGTACGGTTGTCATCAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGTGCACCGCTCTGTCCTTGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGCGAAGGAACACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGGCAAAACGAAGGTTGAGGTTGCCAAAATGATACAGTCCGCCACGGAGGAGGTGATGATACACTACAACAAGCTACACGCCGACCCAACGCAGGG-AGAAACTCTGGACATTGTACTGAAAAAGATGAAGCATCGGCTGGTCGAAAGGATGTCGAGCAGCACGGCCGACACGCTGGGACTCTCGAGGGCAATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATT] [+] EMBL BM635387 [CCGCGCATCAAAAGCAATCGATTCCAACAAGTCTGTTGTCTGATAGTTCGTAGAAAGATAGCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCACCATGTTGCAGGACTGCGACTATGACTACTTCTACGAGGAGGATAAAATGGGTATGACCGTCAGCTCTGGTACGGTTGTCATCAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGTGCACCGCTCTGTCCTTGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGCGAAGGAACACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGGCAAAACGAAGGTTGAGGTTGCCAAAATGATACAGTCCGCCACGGAGGAGGTGATGATACACTACAACAAGCTACACGCCGACCCAACGCAGGG AGAAACTCTGGACATTGTACTGAAAAAGATGAAGCATCGGCTGGTCGAAAGGATGTCGAGCAGCACGGCCGACACGCTGGGACTCTCGAGGGCAATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATT] [+] EMBL BM651059 [ ccgGCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCAGCATGTTGCAGGACTGCGACTATGACTACTTCTACGAGGAGGATAAAATGGGCATGACCGTCAGCTCTGGTACGGTTGTCATCAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGTGCACCGCTCTGTCCATGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGCGAAGGAACACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGGCAAAACGAAGGTTGAAGTTGCCAAAATGATACAGcc ] [+] EMBL BX618775 [ AAAATGATACAGTCCGCCACGGAGGAGGTGATGATACACTACAACAAGCTACACGCCGACCCAACGCAGGGCAGAAACTCTGGACATTGTACTGAAAAAGATGAAGCATCGGCTGGTCGAAAGGATGTCCAGTAGTACAGCCGACACACTGGGACTCTCGAGGGCAATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAACAGCTTGAACGAACGGAAAC ] consensusID : consensus_5282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GCCCCAGGCATTAACACAGCCGACACGCTGGGACTCACTTGTAAAGCGTTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATTGGTGGATCACGCACGAAGGATGCTTAAGGCCCATTTCGATGTCCTTCAGACATACCAAGCGTTTGGAAACATTTTTGCTTCCATAAGTGTCCGGGAGCCGCAACCACGTGCATCGGAGGCGTTCCGTATCTTCGGTGAGCTGCACCGAACATGGAGAAGGACGGCATCAAGATGATCAAAACGTTGAAGCCAATCCTTGCCGACATGGGCACGTATCTGCACAAGGCCATCCCGGACACCAAGCTCACCGTGAAGCGGTACGCCGATGCAAAGTTCAGCTATCTGTCCTACTGTCTAAAGATCAAGGAGATGGACGACGAGGAGCATGGNATATGCCGAATACAGGAGCCACTGTACCGCGTTGAAACGGGCAATTACGAGTATCGGCTGATACTGCGCTGCGGCAGGAGGC] [+] EMBL AL697599 [GCCCCAGGCATTAACACAGCCGACACGCTGGGACTCACTTGTAAAGCGTTTGCAAGAGCTTGAGCGAACGGAAACCATGTACAAGGGATTGGTGGATCACGCACGAAGGATGCTTAAGGCCCATTTCGATGTCCTTCAGACATACCAAGCGTTTGGAAACATTTTTGCTTCCATAAGTGTCCGGGAGCCGCAACCACGTGCATCGGAGGCGTTCCGTATCTTCGGTGAGCTGCACCGAACATGGAGAAGGACGGCATCAAGATGATCAAAACGTTGAAGCCAATCCTTGCCGACATGGGCACGTATCTGCACAAGGCCATCCCGGACACCAAGCTCACCGTGAAGCGGTACGCCGATGCAAAGTTCAGCTATCTGTCCTACTGTCTAAAGATCAAGGAGATGGACGACGAGGAGCATGGNATATGCCGAATACAGGAGCCACTGTACCGCGTTGAAACGGGCAATTACGAGTATCGGCTGATACTGCGCTGCGGCAGGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5282#0 CCGCGCATCAAAAGCAATCGATTCCAACAAGTCTGTTGTCTGATAGTTCGTAGAAAGATA 60 consensus_5282#1 ------------------------------------------------------------ consensus_5282#0 GCATTTTACGCGTAACATTCAGTGGTGCCGAAGAATTATACTACTCCCACCATGTTGCAG 120 consensus_5282#1 --------------------------GCCCCAGGCAT-TAACACAGCCGACACGCTG--G 31 *** ** * ** ** ** ** * ** * consensus_5282#0 GACTGCGACTATGAC-TACTTCTACGAGGAGGATAAAATGGGTATGACCGTCAGCTCTGG 179 consensus_5282#1 GACT-CACTTGTAAAGCGTTTGCAAGAGCTTGAGCGAACGGA---AACCATGTACAAGGG 87 **** * * * * ** * *** ** ** ** *** * * ** consensus_5282#0 TACGGTTG-TCAT-CAAAAAGGACACCAGCAATCTCATCGGCATCAGCATCGGCGGTGGT 237 consensus_5282#1 ATTGGTGGATCACGCACGAAGGATGCTTA-AGGCCCATTTCGATGTCCTTCAGACATACC 146 *** * *** ** ***** * * * *** ** * ** * * consensus_5282#0 GCACCGCTCTGTCCTTGTCTTTACATTGTTCAGGTATTTGATGGCACCCCGGCAGCCCGC 297 consensus_5282#1 AAGCG--TTTGGAAACATTTTTGC-TTCCATAAGTGTCCG--GGAGCCGCAACCACGTGC 201 * * ** * *** * ** * ** * * ** ** * * * ** consensus_5282#0 GAAGGAA-CACTGCAAAGTGGCGATGAGCTGCTCGGCGTGAATGGTGTCTCTGTGAAGGG 356 consensus_5282#1 ATCGGAGGCGTTCCGTATCTTCGGTGAGCTGCAC--CGAACATGGAG-----AAGGACGG 254 *** * * * * ** ******** * ** **** * * * ** consensus_5282#0 CAAAACGAAGGTTGAGGTTGCCAAAATGATACAGTCCGCCACGGAGGAGGTGATGATACA 416 consensus_5282#1 CATCAAGATGATCAAAACGTTGAAGCCAATCCTTGCCGACATGG-GCACGTATC--TGCA 311 ** * ** * * * ** ** * *** ** ** * * ** * ** consensus_5282#0 CTACAACAAGCTACACGCCGA-CCCAACGCAGGGAGAAACTCTGGACATTGTACTGAAAA 475 consensus_5282#1 CAAGGCCATCCCGGACACCAAGCTCACCGTGAAGCGGTACGCCGA------TGCAAAGTT 365 * * ** * ** ** * * ** ** * * ** * * * * * consensus_5282#0 AGATGAAGCATCGGCTGGTCGAAAGGATGTCGAGCAGCACGGCCGACACGCTGGGAC-TC 534 consensus_5282#1 CAGCTATCTGTCCTACTGTCTAAAGATCAAGGAGATGGACGACGAGGAGCATGGNATATG 425 * ** *** **** *** * *** * * *** * * consensus_5282#0 TCGAGGGCA--ATCCTCTGCAACGACTCACTTGTAAAGCGCTTGCAAGAGCTTGAGCGAA 592 consensus_5282#1 CCGAATACAGGAGCCACTGTACCG----CGTTGAAACGGGCAATTACGAGTATCGGCTGA 481 *** ** * ** *** * ** *** ** * ** * *** * ** * consensus_5282#0 CGGAAACCATGTACAAGGGATT 614 consensus_5282#1 TACTGCGCTGCGGCAGGAGGC- 502 * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||