These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACTGACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGTACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCTGGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGAGTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCCCCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAATTGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAAGCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGGCTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAGCCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAACTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGTGTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAGGAAGGAAGGTGGCAGGTATGCGTCAAA] [+] EMBL BX625444 [TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACTGACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGTACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCTGGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGAGTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCCCCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAATTGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAAGCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGGCTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAGCCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAACTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGTGTACACCTGCA ] [+] EMBL BM617593 [ ccgGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAAGCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGGCTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAGCCTGATGTGCTGCAAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAACTGCAGCTTCAAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGTGTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAGGAAGGAAGGTGGCAGGTATGCGTCAAA] consensusID : consensus_5283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTAGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAAGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATGAGCTAAATAAGAAGGAAGGCGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACTTTTCAATATTGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAAAATGTGCGAAAATAACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGATTTAAAAAACCCAGCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTGTATTAATCTAAACTCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA] [+] EMBL AL929691 [ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTAGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAAGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATGAGCTAAATAAGAAGGAAGGCGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACTTTTCAATATTGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAAAATGTGCGAAAATAACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGATTTAAAAAACCCAGCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTGTATTAATCTAAACTCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA] consensusID : consensus_5283#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [NTCCTGCCTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGGTTGAGAGTAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCNCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAAGAAGGAAGGNGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACCTTTCAATATTGCGTGAGAACAGTGCAGTAAGAATGATTGGAAGAAAAAAGA] [+] EMBL BX620468 [NTCCTGCCTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGGTTGAGAGTAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCNCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAAGAAGGAAGGNGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACCTTTCAATATTGCGTGAGAACAGTGCAGTAAGAATGATTGGAAGAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5283#1 ------------------------------------------------------------ consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACT 60 consensus_5283#1 ------------------------------------------------------------ consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 GACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGT 120 consensus_5283#1 ------------------------------------------------------------ consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 ACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCT 180 consensus_5283#1 ------------------------------------------------------------ consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 GGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGA 240 consensus_5283#1 ------------------------------------------------------------ consensus_5283#2 --------------------------------------------NTCCTGCCTGTTTTTT 16 consensus_5283#0 GTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCC 300 consensus_5283#1 ---ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTG-----AGAGTAGA 52 consensus_5283#2 TTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGGTTG-----AGAGTAG- 70 consensus_5283#0 CCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAAT 360 * * * * * ** * * * * *** consensus_5283#1 AGCTAGAGAGCTCTAGTACAAC--CACGGCGAGTG------CGATTTCGCGTCC--CCAA 102 consensus_5283#2 --CTAGAGAGCTCTAGTACAAC--CACGGCGAGTG------CGATTTCNCGTCC--CCAA 118 consensus_5283#0 TGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAA 420 * * * * *** * ** * ** * **** * ** **** consensus_5283#1 GTAGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAA 162 consensus_5283#2 GTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAA 178 consensus_5283#0 GCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGG 480 * * **** * * * ** * * ** ** ** ** * consensus_5283#1 CTGGA--AGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATG-AG 219 consensus_5283#2 CTGGA--GGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATG-AG 235 consensus_5283#0 CTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAG 540 ** * * * *** * *** * * ** * * * ** ** ** consensus_5283#1 CTAAATAAGAAGGAAGGCGG--CAGGTATGCGTCAAACTAGAAATGTTAAA-GACTG--A 274 consensus_5283#2 CTAAATAAGAAGGAAGGNGG--CAGGTATGCGTCAAACTAGAAATGTTAAA-GACTG--A 290 consensus_5283#0 CCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAA 600 * ** * * ** ** ** * * * * ** ** **** * consensus_5283#1 CTGAAATTAGTTGTGAAATT-TAAACCGAATTG-AGCACTTT--TCAATAT--------- 321 consensus_5283#2 CTGAAATTAGTTGTGAAATT-TAAACCGAATTG-AGCACCTT--TCAATAT--------- 337 consensus_5283#0 CTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGT 660 *** * * *** * * ** ** ***** * ** * ** consensus_5283#1 -------TGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAAAG-AAAGAAAGAAA 373 consensus_5283#2 -------TGCGTGAGAACAGTGCAGTAAGAATGATTGGAAGAAAAAAG-A---------- 379 consensus_5283#0 GTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGA 720 *** * ** * ** * ***** * * * consensus_5283#1 GAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAAAATGTGCGAAAAT 433 consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 GTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGT 780 consensus_5283#1 AACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGATTTAAAAAACCCA 493 consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 GAAAAGTGTTTGTG--TAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTG 838 consensus_5283#1 GCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTGTATTAATCTAAAC 553 consensus_5283#2 ------------------------------------------------------------ consensus_5283#0 GAGGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGG 898 consensus_5283#1 TCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA------- 591 consensus_5283#2 --------------------------------------------- consensus_5283#0 GAAAATGAGCTA-AATAGGAAGGAAGGTGGCAGGTATGCGTCAAA 942 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||