cluster # 5283

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Anopheles gambiae
cluster # 5283 cluster # 5283 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5283#0 length = 942 sequences # 2

consensus_5283#1 length = 591 sequences # 1
consensus_5283#2 length = 379 sequences # 1

consensusID : consensus_5283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 942
fasta sequence

                              [TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACTGACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGTACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCTGGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGAGTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCCCCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAATTGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAAGCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGGCTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAGCCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAACTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGTGTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAGGAAGGAAGGTGGCAGGTATGCGTCAAA]

[+] EMBL BX625444             [TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACTGACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGTACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCTGGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGAGTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCCCCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAATTGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAAGCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGGCTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAGCCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAACTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGTGTACACCTGCA                                                                                                                                                                                                                                                                               ]
[+] EMBL BM617593             [                                                                                                                                                                                                                                                                                                                                                                                         ccgGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAAGCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGGCTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAGCCTGATGTGCTGCAAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAACTGCAGCTTCAAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGTGTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAGGAAGGAAGGTGGCAGGTATGCGTCAAA]




>consensus_5283#0
TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACT
GACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGT
ACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCT
GGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGA
GTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCC
CCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAAT
TGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAA
GCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGG
CTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAG
CCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAA
CTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGT
GTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGA
GTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGT
GAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGA
GGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGGGA
AAATGAGCTAAATAGGAAGGAAGGTGGCAGGTATGCGTCAAA

consensusID : consensus_5283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTAGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAAGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATGAGCTAAATAAGAAGGAAGGCGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACTTTTCAATATTGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAAAATGTGCGAAAATAACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGATTTAAAAAACCCAGCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTGTATTAATCTAAACTCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA]

[+] EMBL AL929691             [ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTGAGAGTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTAGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAAGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATGAGCTAAATAAGAAGGAAGGCGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACTTTTCAATATTGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAAAATGTGCGAAAATAACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGATTTAAAAAACCCAGCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTGTATTAATCTAAACTCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA]




>consensus_5283#1
ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTGAGAGTAGAAGCTAGAG
AGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTAGTGAAAAGTGTTTGT
GTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAAGAATGCAGGAAG
AAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATGAGCTAAATAAGAAGGAAGGCGGC
AGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACC
GAATTGAGCACTTTTCAATATTGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAA
AGAAAGAAAGAAAGAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAA
AATGTGCGAAAATAACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGA
TTTAAAAAACCCAGCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTG
TATTAATCTAAACTCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA

consensusID : consensus_5283#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [NTCCTGCCTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGGTTGAGAGTAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCNCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAAGAAGGAAGGNGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACCTTTCAATATTGCGTGAGAACAGTGCAGTAAGAATGATTGGAAGAAAAAAGA]

[+] EMBL BX620468             [NTCCTGCCTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGGTTGAGAGTAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCNCGTCCCCAAGTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTGGAGGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAATAAGAAGGAAGGNGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAGTTGTGAAATTTAAACCGAATTGAGCACCTTTCAATATTGCGTGAGAACAGTGCAGTAAGAATGATTGGAAGAAAAAAGA]




>consensus_5283#2
NTCCTGCCTGTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGG
TTGAGAGTAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCNCGTCCCCAAGT
GGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACT
GGAGGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATGAGCTAAA
TAAGAAGGAAGGNGGCAGGTATGCGTCAAACTAGAAATGTTAAAGACTGACTGAAATTAG
TTGTGAAATTTAAACCGAATTGAGCACCTTTCAATATTGCGTGAGAACAGTGCAGTAAGA
ATGATTGGAAGAAAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5283#1      ------------------------------------------------------------
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      TGGACAGTTGGGCCCGAATGCCGCCGGTTTACCGAAGGAGCTTCCCACGCTCACGATACT 60
                                                                                  

consensus_5283#1      ------------------------------------------------------------
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      GACCGGCCAGGAGGACAAGTGGAAGTGGGGCGGCTGCGACGATAATGTAAACTTTGGCGT 120
                                                                                  

consensus_5283#1      ------------------------------------------------------------
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      ACGAAAATCGAAAGACTTTCTCGACGCGCGGTTGCGCAAGAAGAGCGACATCAAGACGCT 180
                                                                                  

consensus_5283#1      ------------------------------------------------------------
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      GGTCCGGCTGCACAACAATGACGCGGGCCGATTGGCCGTCAAGCAGTTCATGCGCATGGA 240
                                                                                  

consensus_5283#1      ------------------------------------------------------------
consensus_5283#2      --------------------------------------------NTCCTGCCTGTTTTTT 16
consensus_5283#0      GTGCAAATGTCACGGGCTGTCCGGGTCCTGCACGACCAAAACCTGCTGGATGAAACTGCC 300
                                                                                  

consensus_5283#1      ---ATCCCCCGAGGTTAGTTAGTATTGGGTTAGATGTTTTGAAGTTG-----AGAGTAGA 52
consensus_5283#2      TTTTTTTTTTTTGTTTTTTTTTTTTTGGGATAGATGTTTAGGGGTTG-----AGAGTAG- 70
consensus_5283#0      CCCGTTCTCGGAGGTGGGCGCCCGGCTGAAGGAACACTTTGACGGCGCAACCAAGGTAAT 360
                          *       * *            *     *   ** *  *  *     *  ***  

consensus_5283#1      AGCTAGAGAGCTCTAGTACAAC--CACGGCGAGTG------CGATTTCGCGTCC--CCAA 102
consensus_5283#2      --CTAGAGAGCTCTAGTACAAC--CACGGCGAGTG------CGATTTCNCGTCC--CCAA 118
consensus_5283#0      TGCGCGGAACGATGGGCACAGCTTCATGCCGGACGATGCGACGATCAAGCTGCCGACCAA 420
                        *  *  *      * *** *  ** * **   *      ****    *  **  ****

consensus_5283#1      GTAGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAA 162
consensus_5283#2      GTGGTGAAAAGTGTTTGTGTAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAA 178
consensus_5283#0      GCGGGACCTGGTGTACACGGAGGACTCGGACGACTTCTGCGAGCCGAACGCCAAGACGGG 480
                      *  *      ****    * * *        ** *   * **   **  ** ** *    

consensus_5283#1      CTGGA--AGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGAAAAATG-AG 219
consensus_5283#2      CTGGA--GGAATGCAGGAAGAAAAGTTGGAAAGGACATACAAAAGATGGGGAAAATG-AG 235
consensus_5283#0      CTCGCTCGGGACGCACGGCCGGGAGTGTAACATCACGTCGAGCGGCGTGGACGGCTGCAG 540
                      ** *    * * *** *      ***   * *  ** *  *   *   **     ** **

consensus_5283#1      CTAAATAAGAAGGAAGGCGG--CAGGTATGCGTCAAACTAGAAATGTTAAA-GACTG--A 274
consensus_5283#2      CTAAATAAGAAGGAAGGNGG--CAGGTATGCGTCAAACTAGAAATGTTAAA-GACTG--A 290
consensus_5283#0      CCTGATGTGCTGCNAGCGGGGCCAAACGCACAGCCAGATGGAGGTGAAGCGCAACTGCAA 600
                      *   **  *  *  **  **  **      *  * *  * **  **       ****  *

consensus_5283#1      CTGAAATTAGTTGTGAAATT-TAAACCGAATTG-AGCACTTT--TCAATAT--------- 321
consensus_5283#2      CTGAAATTAGTTGTGAAATT-TAAACCGAATTG-AGCACCTT--TCAATAT--------- 337
consensus_5283#0      CTGCAGCTTCNAGTGGTGCTGCGAGGTGACGTGCAGCACCTGCATCGACATACAGGATGT 660
                      *** *  *    ***    *   *   **  ** ***** *   ** * **         

consensus_5283#1      -------TGCGTGAAAACAGTGCAGTGAGAATGATTGGAAGAAAAAAG-AAAGAAAGAAA 373
consensus_5283#2      -------TGCGTGAGAACAGTGCAGTAAGAATGATTGGAAGAAAAAAG-A---------- 379
consensus_5283#0      GTACACCTGCAAATGAGTGGTTCGGTCGTTAGTATTGGGTTAGATGTTTAGGGGTTGAGA 720
                             ***     *   ** * **    *  *****   * *     *          

consensus_5283#1      GAAAGAAAGAGAGAGTACAGAGAGGAAGTAGTGAAGCGAGACACTAAAATGTGCGAAAAT 433
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      GTAGAAGCTAGAGAGCTCTAGTACAACCACGGCGAGTGCGATTTCGCGTCCCCAAGTGGT 780
                                                                                  

consensus_5283#1      AACAGTTATCAGAGAGCAAATACTGAGTGTACATACCGAAAAGAGGATTTAAAAAACCCA 493
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      GAAAAGTGTTTGTG--TAAGTTATCAGGGAATAAAGGGAAAAGAGGGCAAACAAAAACTG 838
                                                                                  

consensus_5283#1      GCATCCCTCCCCTTTACAAGTTTCCTTCCCTTTCCTTAAAAATCTTGTATTAATCTAAAC 553
consensus_5283#2      ------------------------------------------------------------
consensus_5283#0      GAGGAATGCAGGAAGAAAAGTTGACATACAAAAGATAAGAAAGGACATACAAAAGATGGG 898
                                                                                  

consensus_5283#1      TCTAATGCTTTGTGATCTGTGGTGAACACACAACCGTA------- 591
consensus_5283#2      ---------------------------------------------
consensus_5283#0      GAAAATGAGCTA-AATAGGAAGGAAGGTGGCAGGTATGCGTCAAA 942