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Anopheles gambiae
cluster # 5284 cluster # 5284       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5284#0 length = 738 sequences # 2  
consensus_5284#1 length = 675 sequences # 1  
consensus_5284#2 length = 568 sequences # 1  

consensusID : consensus_5284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 738
fasta sequence
                              [CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA]

[+] EMBL BM631045             [CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGGTTTTTTTCCGGCG                                                                                                                   ]
[+] EMBL BM648238             [                                            ccGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACC GGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA]


>consensus_5284#0 CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACA TTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTA TCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAG CGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGG ACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTG AAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAG TGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTAC AAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAAT AAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGA CGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCC ACCCACCGGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCT AGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTT GATCTGCCGGCGGAACCA



consensusID : consensus_5284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence
                              [CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGTGTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTACTCGCC]

[+] EMBL BM583273             [CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGTGTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTACTCGCC]


>consensus_5284#1 CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATT CTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGC TGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATAC GACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGT GTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGT GTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGG AAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACG ATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGC ACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGT AAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGC CCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACA GCTCTGCTACTCGCC



consensusID : consensus_5284#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGCACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCCCCGGGCGGAAACCCANCCCAAGCCANAC]

[+] EMBL AL929719             [GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGCACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCCCCGGGCGGAAACCCANCCCAAGCCANAC]


>consensus_5284#2 GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGG TTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTT ACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTG ACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAG CACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGA CGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCT CCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGC ACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACC CGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCC CCGGGCGGAAACCCANCCCAAGCCANAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5284#1      ------------------------------------------------------------
consensus_5284#2      ------------------------------------------------------------
consensus_5284#0      CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACA 60
                                                                                  

consensus_5284#1      ------------------------------------------------------------
consensus_5284#2      ------------------------------------------------------------
consensus_5284#0      TTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTA 120
                                                                                  

consensus_5284#1      ------------------------------------------------------------
consensus_5284#2      ------------------------------------------------------------
consensus_5284#0      TCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAG 180
                                                                                  

consensus_5284#1      ----------------------------------------------------CCGCGCG- 7
consensus_5284#2      -------------------------------GGCCAAGAATCGNCCCGAGGTNTCANCG- 28
consensus_5284#0      CGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGG 240
                                                                                * 

consensus_5284#1      -TGCTCTCTCCG-GTGTGCA-GTGC-TT-TTCGGTTCGCTTCCTTTTGGTGGAAAATTCT 62
consensus_5284#2      -TGCTCTCTCCGCGTGTGCACGTGCGTT-TTCGGTTCGCTTCCTTTTGGTGGAAAATTCT 86
consensus_5284#0      ACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACA-TAGAAAATACT 299
                        * * **  **  *****    *  ** **  *   ****   *    * ****** **

consensus_5284#1      AAA--------------CATTGCCTGTTTC-----------------------CCCCGGA 85
consensus_5284#2      AAA--------------CATTGCCTGTTTC-----------------------CCCCGGA 109
consensus_5284#0      GAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGA 359
                       **              *  ***  *****                          * **

consensus_5284#1      GTGGTTGGCTTACGGTGCTGTGGTTTCCC-GGTCGCTGTCTGGCGAACAGCTGTTTGTGT 144
consensus_5284#2      GTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGT 169
consensus_5284#0      GTGATTGGCTTAAAGTGCTGTGGTTTCCC-GGTCGCTCTCTGGCGAACAGCTGTTTGTGT 418
                      *** ********  *************** ******* **********************

consensus_5284#1      ACAAAGTGTTGACC-GCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAA-AGCGA- 201
consensus_5284#2      ACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGAC 229
consensus_5284#0      ACAAAGTGTTGAGC-CCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAA-AGCGA- 475
                      ************ *   * *** *** *********** *** ********** ***** 

consensus_5284#1      AGAATAAAAAGCACGTGGTC-TATCGGGCGGTGAGTGTGTGTGTGCCCTTTTT---CCAT 257
consensus_5284#2      AGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCAT 289
consensus_5284#0      AGAATAAAAAGCACGTGGTC-TATCGGTCGGTG--TGTGTGTGTGCCCTTTTT---TCAT 529
                      ****** ************* ****** *****  ********** ******     ***

consensus_5284#1      CGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTT--TGATTGATATCC 315
consensus_5284#2      CGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCC 349
consensus_5284#0      CGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTT--TGATTGATATCC 587
                      ******************************** *************   ***********

consensus_5284#1      -ATTTCGCTCTCCCA-CCCACCGGTTTTTT--TCCGGCGCACTCGAAGGAA--GAAAACG 369
consensus_5284#2      CATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACG 409
consensus_5284#0      -ATTTCGCTCTCCCA-CCCACCGGGTTTTTT-TCCGGCGCACTCGAAGGAA--GAAAACG 642
                       ************** **** *** *      ** ****************   ******

consensus_5284#1      TCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACG 429
consensus_5284#2      TCAAACC---CGGCACGTG---------CAACCCAGAAGGGNACAGTTTACGTGGCAACA 457
consensus_5284#0      TCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACG 702
                      **** **   ** *** *           *   ** **  *  * **     *** *** 

consensus_5284#1      GGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCA 489
consensus_5284#2      CACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAA--ANCCGGGGGCAACG----GACG 511
consensus_5284#0      GGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA------------------------ 738
                        *  **   *  * * * * *       **    *                        

consensus_5284#1      ACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGC 549
consensus_5284#2      AAGGTAACACCGGTTAGGAGATCC--TGGCCCCGGGCGGAAACCCANCC-CAAGCCANAC 568
consensus_5284#0      ------------------------------------------------------------
                                                                                  

consensus_5284#1      GGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGT 609
consensus_5284#2      ------------------------------------------------------------
consensus_5284#0      ------------------------------------------------------------
                                                                                  

consensus_5284#1      GGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTA 669
consensus_5284#2      ------------------------------------------------------------
consensus_5284#0      ------------------------------------------------------------
                                                                                  

consensus_5284#1      CTCGCC 675
consensus_5284#2      ------
consensus_5284#0      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)