These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence [CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA] [+] EMBL BM631045 [CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGGTTTTTTTCCGGCG ] [+] EMBL BM648238 [ ccGAAAATTCTAAACATTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTATCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAGCGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGGACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACATAGAAAATACTGAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGAGTGATTGGCTTAAAGTGCTGTGGTTTCCCGGTCGCTCTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGAGCCCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGTCGGTGTGTGTGTGTGCCCTTTTTTCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACC GGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA] consensusID : consensus_5284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGTGTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTACTCGCC] [+] EMBL BM583273 [CCGCGCGTGCTCTCTCCGGTGTGCAGTGCTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCGCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAAAGCGAAGAATAAAAAGCACGTGGTCTATCGGGCGGTGAGTGTGTGTGTGCCCTTTTTCCATCGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTTTGATTGATATCCATTTCGCTCTCCCACCCACCGGTTTTTTTCCGGCGCACTCGAAGGAAGAAAACGTCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACGGGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCAACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGCGGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGTGGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTACTCGCC] consensusID : consensus_5284#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGCACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCCCCGGGCGGAAACCCANCCCAAGCCANAC] [+] EMBL AL929719 [GGCCAAGAATCGNCCCGAGGTNTCANCGTGCTCTCTCCGCGTGTGCACGTGCGTTTTCGGTTCGCTTCCTTTTGGTGGAAAATTCTAAACATTGCCTGTTTCCCCCGGAGTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGTACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGACAGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCATCGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCCCATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACGTCAAACCCGGCACGTGCAACCCAGAAGGGNACAGTTTACGTGGCAACACACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAAANCCGGGGGCAACGGACGAAGGTAACACCGGTTAGGAGATCCTGGCCCCGGGCGGAAACCCANCCCAAGCCANAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5284#1 ------------------------------------------------------------ consensus_5284#2 ------------------------------------------------------------ consensus_5284#0 CCGCCCACGCGTCCGGCGGTGCTGTTCGGATCGCTTCCTTTTGGTGGAAAATTCTAAACA 60 consensus_5284#1 ------------------------------------------------------------ consensus_5284#2 ------------------------------------------------------------ consensus_5284#0 TTGCCCGTTTCCCCCGGGTGAGTGTGTGTGGTGCTTTTGTTTTACCCACATTTTTACGTA 120 consensus_5284#1 ------------------------------------------------------------ consensus_5284#2 ------------------------------------------------------------ consensus_5284#0 TCCTTTCGAGGGAGGGGAAAAGAATTGGTGTAGAGGGCTGCAATCGTTTCGCAAACAGAG 180 consensus_5284#1 ----------------------------------------------------CCGCGCG- 7 consensus_5284#2 -------------------------------GGCCAAGAATCGNCCCGAGGTNTCANCG- 28 consensus_5284#0 CGTACAGTTTTTCCCACGGGCAATCTTGAACAGGCAAATTACGCAGCTTCGTGCCAGTGG 240 * consensus_5284#1 -TGCTCTCTCCG-GTGTGCA-GTGC-TT-TTCGGTTCGCTTCCTTTTGGTGGAAAATTCT 62 consensus_5284#2 -TGCTCTCTCCGCGTGTGCACGTGCGTT-TTCGGTTCGCTTCCTTTTGGTGGAAAATTCT 86 consensus_5284#0 ACGTTGTCGTCGAATGTGCTGTAGTGTTGTTTAGAATGCTTTAGTACA-TAGAAAATACT 299 * * ** ** ***** * ** ** * **** * * ****** ** consensus_5284#1 AAA--------------CATTGCCTGTTTC-----------------------CCCCGGA 85 consensus_5284#2 AAA--------------CATTGCCTGTTTC-----------------------CCCCGGA 109 consensus_5284#0 GAAAGAAATACGCAAGTCCGTGCAGGTTTCATTAGCTCAACCAAAATTCCACATTTCAGA 359 ** * *** ***** * ** consensus_5284#1 GTGGTTGGCTTACGGTGCTGTGGTTTCCC-GGTCGCTGTCTGGCGAACAGCTGTTTGTGT 144 consensus_5284#2 GTGGTTGGCTTACGGTGCTGTGGTTTCCCCGGTCGCTGTCTGGCGAACAGCTGTTTGTGT 169 consensus_5284#0 GTGATTGGCTTAAAGTGCTGTGGTTTCCC-GGTCGCTCTCTGGCGAACAGCTGTTTGTGT 418 *** ******** *************** ******* ********************** consensus_5284#1 ACAAAGTGTTGACC-GCTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAA-AGCGA- 201 consensus_5284#2 ACAAAGTGTTGACCCGGTTGCGCCAATCCTTGCATACGACGGGCAGTTTCAAACAGCGAC 229 consensus_5284#0 ACAAAGTGTTGAGC-CCTCGCGTCAAACCTTGCATACGGCGGACAGTTTCAAA-AGCGA- 475 ************ * * *** *** *********** *** ********** ***** consensus_5284#1 AGAATAAAAAGCACGTGGTC-TATCGGGCGGTGAGTGTGTGTGTGCCCTTTTT---CCAT 257 consensus_5284#2 AGAATACAAAGCACGTGGTCCTATCGGGCGGTGAGTGTGTGTGTGACCTTTTNATACCAT 289 consensus_5284#0 AGAATAAAAAGCACGTGGTC-TATCGGTCGGTG--TGTGTGTGTGCCCTTTTT---TCAT 529 ****** ************* ****** ***** ********** ****** *** consensus_5284#1 CGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTT--TGATTGATATCC 315 consensus_5284#2 CGCTGGAACGACGCAAGCGACGCATGACCACAATCTTCACGGTGTTCTCGATTGATATCC 349 consensus_5284#0 CGCTGGAACGACGCAAGCGACGCATGACCACACTCTTCACGGTGTT--TGATTGATATCC 587 ******************************** ************* *********** consensus_5284#1 -ATTTCGCTCTCCCA-CCCACCGGTTTTTT--TCCGGCGCACTCGAAGGAA--GAAAACG 369 consensus_5284#2 CATTTCGCTCTCCCAACCCAACGGTTNANACATCGGGCGCACTCGAAGGAACGAAAAACG 409 consensus_5284#0 -ATTTCGCTCTCCCA-CCCACCGGGTTTTTT-TCCGGCGCACTCGAAGGAA--GAAAACG 642 ************** **** *** * ** **************** ****** consensus_5284#1 TCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACG 429 consensus_5284#2 TCAAACC---CGGCACGTG---------CAACCCAGAAGGGNACAGTTTACGTGGCAACA 457 consensus_5284#0 TCAACCCGCACGTCACCTAGAGAGGAATTAGTGCACAATCGAGCGGTAACGATGGTAACG 702 **** ** ** *** * * ** ** * * ** *** *** consensus_5284#1 GGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCACCAGCCACCGCCAGCACCGTAGCA 489 consensus_5284#2 CACTTCGNAGGCCAGGGTAAACCCGNACTGGGGTAA--ANCCGGGGGCAACG----GACG 511 consensus_5284#0 GGCAACGAGAGTAACGTTGATCTGCCGGCGGAACCA------------------------ 738 * ** * * * * * * ** * consensus_5284#1 ACGGCAACGGCGATGGACACAACCAGCGACGCCCCGGGGCAACCGAACCGTAAGCTGGGC 549 consensus_5284#2 AAGGTAACACCGGTTAGGAGATCC--TGGCCCCGGGCGGAAACCCANCC-CAAGCCANAC 568 consensus_5284#0 ------------------------------------------------------------ consensus_5284#1 GGGTTTGAGTTCTACGAAAAGGTGCTCCGGTTCGCCGCGGTACGTCGTGGCCCCGATGGT 609 consensus_5284#2 ------------------------------------------------------------ consensus_5284#0 ------------------------------------------------------------ consensus_5284#1 GGACGCTAGCGAGCTGGGCTGGCGGCTGCTGAGCCGCCGGCACGGCGCACAGCTCTGCTA 669 consensus_5284#2 ------------------------------------------------------------ consensus_5284#0 ------------------------------------------------------------ consensus_5284#1 CTCGCC 675 consensus_5284#2 ------ consensus_5284#0 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||