cluster # 5287

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5287 cluster # 5287 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5287#0 length = 1082 sequences # 3

consensus_5287#1 length = 194 sequences # 1

consensusID : consensus_5287#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1082
fasta sequence

                              [GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGTCGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATGCATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAAATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTGCCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCCGGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGTGATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACAACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCTGT]

[+] EMBL BX610467             [GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGTCGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX609287             [                         AGCAAAATTGAGCGGACGAAAGGGAGTGCAGCAGTTGGGGAAAGCTTGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTTTAAATGCATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAAATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTGCCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTG                                                                                                                                                                                                      ]
[+] EMBL BX622231             [                                                                                                                                                                                                                                                                                                                                                                                                        gaCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCCGGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGTGATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACAACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCTGT]




>consensus_5287#0
GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGT
CGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATG
CATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAA
ATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTG
CCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGC
AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT
TGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACAC
ACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGT
TGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTT
TGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGC
AGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAAC
TAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTC
TCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCT
GCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTG
CGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCC
GGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGT
GATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACA
ACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCT
GT

consensusID : consensus_5287#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTC]

[+] EMBL BM649948             [CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTC]




>consensus_5287#1
CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGC
GCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTAT
ATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACAC
ACACACACACACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5287#0      GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGT 60
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      CGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATG 120
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      CATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAA 180
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      ATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTG 240
consensus_5287#1      ----------------------------------------------------------CC 2
                                                                                  

consensus_5287#0      CCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGC 300
consensus_5287#1      GCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGC 62
                       ************************************************** ********

consensus_5287#0      AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT 360
consensus_5287#1      AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT 122
                      ************************************************************

consensus_5287#0      TGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACAC 420
consensus_5287#1      TGTTTAAACCTCC-CATTTCTTTCTCTTCTCTCTCT-CTCTCTCTCTCTCTCACACACAC 180
                      **********  * * ** **  *  ********** ** ***** ****** * *****

consensus_5287#0      ACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGT 480
consensus_5287#1      ACACACACACACTC---------------------------------------------- 194
                      **************                                              

consensus_5287#0      TGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTT 540
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      TGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGC 600
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      AGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAAC 660
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      TAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTC 720
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      TCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCT 780
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      GCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTG 840
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      CGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCC 900
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      GGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGT 960
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      GATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACA 1020
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      ACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCT 1080
consensus_5287#1      ------------------------------------------------------------
                                                                                  

consensus_5287#0      GT 1082
consensus_5287#1      --