These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence [GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGTCGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATGCATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAAATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTGCCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCCGGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGTGATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACAACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCTGT] [+] EMBL BX610467 [GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGTCGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTC ] [+] EMBL BX609287 [ AGCAAAATTGAGCGGACGAAAGGGAGTGCAGCAGTTGGGGAAAGCTTGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTTTAAATGCATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAAATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTGCCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTG ] [+] EMBL BX622231 [ gaCTTCTTTCTCTTTCTCTCTCTCACACACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGTTGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTTTGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGCAGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAACTAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTCTCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCTGCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTGCGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCCGGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGTGATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACAACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCTGT] consensusID : consensus_5287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTC] [+] EMBL BM649948 [CCGCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGCAAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATATTGTTTAAACCTCCCATTTCTTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5287#0 GGACAAAAACAAAACACAACGCATCAGCAAAATGGAGCGGACGAAAGGGAGTGCAGCAGT 60 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 CGGGGAAAGCTGGAAGCGACGAGAAGAACAAGGGAGTAACAAAGGAAACCACTCTAAATG 120 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 CATCCTTGGATGTGAATTACATTGTTATGTTGATCGTATCTTATGAAAGCAAAGCCACAA 180 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 ATGAAGAACAACATTCACACACACACCCACACCCACACATGTAGTCGAATGTTAGGTTTG 240 consensus_5287#1 ----------------------------------------------------------CC 2 consensus_5287#0 CCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTACGAAAGCGC 300 consensus_5287#1 GCACAAAGAAGGGCTAGAGGGAAAAGCTACTCTAAGGCGCGGTCCATACTAGGAAAGCGC 62 ************************************************** ******** consensus_5287#0 AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT 360 consensus_5287#1 AAGAACCTTATAACAATCGCGTAACGTACATTAGTTTGCTTTTTTATTATTATTGTATAT 122 ************************************************************ consensus_5287#0 TGTTTAAACCAACGCCTTCCTCCCATTTCTCTCTCTTCTTTCTCTTTCTCTCTCTCACAC 420 consensus_5287#1 TGTTTAAACCTCC-CATTTCTTTCTCTTCTCTCTCT-CTCTCTCTCTCTCTCACACACAC 180 ********** * * ** ** * ********** ** ***** ****** * ***** consensus_5287#0 ACACACACACACTCTCCTTCTCGCTCCTTTCTCCCATAGCCGATCGTTGTACATTAGGGT 480 consensus_5287#1 ACACACACACACTC---------------------------------------------- 194 ************** consensus_5287#0 TGTGAACCGCTGCGGAGAAGTTATTTGTTTAGGGTATAGGTTTATCTATGTTTTGTTGTT 540 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 TGTTGCGGTGAAAAATCACCACCACCACCCACCCCCGCGTACAGTTGTGCTGCCGAGGGC 600 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 AGGGAAGAAAAAAAAAAGAAGGCGCGGGTGATAATTTATGTTCCAATTAGTGTTTACAAC 660 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 TAACAAAATAACAACATACACACATAGAGAAACACGCGCCCACGTGTCCCATTACTAGTC 720 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 TCGTTTATCGATTGTGACGTTTATTTCTTTTCATTTTATTTCACCTTTTCCCGGCCATCT 780 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 GCTCCCCATTCACGCGATAGACACACAACACACAGACGCACATGCACACACACACGCGTG 840 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 CGTTGTTTCCTTTTTGTTAGATGCCAGAAAGTTTGTATAGATTGAAAGTGCTTTTACGCC 900 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 GGTATTTGTGTAAAAAAAAAAACACACACACACACTAGTGTATAGTGGCGAGGGTGAGGT 960 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 GATGCAGGAATCGAAGCGCCGCCGGAAAAAAAGGGATATAGATTTTTACTTTTTGCGACA 1020 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 ACCAATGGTTGGCTANGTCCTAGGACNAAGGGATTGCAAATTGGGGAGCTTCAGGTTTCT 1080 consensus_5287#1 ------------------------------------------------------------ consensus_5287#0 GT 1082 consensus_5287#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||