These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1191 fasta sequence [GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAATCGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGGCTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACGATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGCGCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAGTGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGTATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACAGCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCAACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATACGGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTACCGTCGATGA-TGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATC-AATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGA-CGCCGCAACGGC-GGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGCGCCACCTGGAGCCTTCCGTNTACTTCTGG-ATAATGAAGAAACGGGCGGAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTA-TTCCTTTCATTTCAATCG-ACAACG-GG-TG-TG-TGACCA-TGGCAGGGCGCATTA-TA-TGCTCT---TNCCCA-T-TGTNAGTT-TAC-AATTATTGG-T-AG-CTA-TTTAA-AACTATACGCTTNCCACCCCGAA] [+] EMBL CNS08CF1 [GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAATCGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGGCTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACGATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGCGCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAGTGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGTATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACAGCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCAACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATACGGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTACCGTCGATGA TGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACA CTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATC AATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGA CGCCGCAACGGCGGGGCGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCA CCTACTGGTTGCGCCACCTGGCGCCTTCCG ] [+] EMBL AL929898 [ cgaggttAAAGCTTGCCTACCGTCGATGACTGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATCAAATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGATCGCCGCAACGGC GGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGCGCCACCTGGAGCCTTCCGTNTACTTCTGGNATAATGAAGAAACGGGCGGAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTA TTCCTTTCATTTCAATCGCACAACGCGGCTGCTGCTGACCACTGGCAGGGCGCATTACTACTGCTCTCNCTNCCCACTCTGTNAGTTCTACAAATTATTGGNTAAGNCTACTTTAACAACTATACGCTTNC ] [+] EMBL BX626118 [ TCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGCCATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGGATAACATCAAGGTGACGCTGATATCGCCCGGTTACATC AATACGGCGCTGTCACTGAACGCGCTTACCGGGACCGGTGCATCGTATGGCAAAATGGA CGCCGCAACGGC GGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATACTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCAGCCTACTGGTTGCGCCACCTGGAGCCTTCCGTTTACTTCTGG ATAATGAAGAAACGGGCGGAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTTTCTAGTTCCTTTCATTTCAATCG ACAACG GG TG TG TGACCA TGGCAGGGCGCATTA TA TGTTTT TTTTTA T TGTTAGTT TAC AATTATTGG T AG CTA TTTAA AACTATACGTTTACCACCCCGAA] consensusID : consensus_5289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [CCCGAGGTTNAAGCTGCTACGTCGATGATTGCACGCATGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGTGCAAGTTTGGCATCCCGCACGTTCCGCGTACAGTGCATNGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGACGCTGGATATCTGCCCGGTTACATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCGTTGAACCTGGATGCATCNGCTATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNGTGGGGTGTGCTGCGAATCTGACTCCCAGTGAACACAAGCGTCCAAGCATAACTTGATAGGCTGATCCGCGCTGGTGACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGTCCTGGCGCTGCAGCCTACCTTGTGGTTTTGGCCGGGCCAACCCTTGTGGCAAGGCCCTATCCCGGTTTTACCTTCCTTGTGGAGTTA] [+] EMBL AL931904 [CCCGAGGTTNAAGCTGCTACGTCGATGATTGCACGCATGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGTGCAAGTTTGGCATCCCGCACGTTCCGCGTACAGTGCATNGAAGCATGCGATGCAAGCGTTCTGCGACAGCTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGACGCTGGATATCTGCCCGGTTACATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCGTTGAACCTGGATGCATCNGCTATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNGTGGGGTGTGCTGCGAATCTGACTCCCAGTGAACACAAGCGTCCAAGCATAACTTGATAGGCTGATCCGCGCTGGTGACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGTCCTGGCGCTGCAGCCTACCTTGTGGTTTTGGCCGGGCCAACCCTTGTGGCAAGGCCCTATCCCGGTTTTACCTTCCTTGTGGAGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5289#0 GTCGTCAGTAGCAGATTAGACAGGGCAATCGAAACCACCAGTAAAGGCAAACAGTGGAAT 60 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 CGGCTGGAAAACAAAATGAAGAACCTTGCAGAGCGTTCCGCTGGGTCGCTTTACTGGTGG 120 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 CTGCTGGCCACACTATTCCTACCGATAGCCATTCCCGGTCTAGTGCTGAAGCTGCTGACG 180 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 ATGATGAAGGAACAACGCAACGCGCGCCATTTAAACGGGAAGGTCGTTCTCATTACTGGC 240 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 GCTACTCGGGCTTGGGGGAAGCGTTGGCGCACAGCTTCTTTCTGGCCGGGTGCAAGGTAG 300 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 TGCTGGCCGCCCGGCGTAAGGATGAGCTGGAACGGGTGCGAAAGGATCTGCTTGAGCTGT 360 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 ATGCTTTTGTGCCGACCCATCCGCCGATTATTTTGCCGCTCGACCTTTCCGATCTGAACA 420 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 GCATCGGCGGCAAGGTGCAGAGCGTGCTGGAAATACACGGCGCCATCGACATACTGGTCA 480 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 ACAACGGCGGTATCAGTGTGCGGGGCGATGCCCTCTCGACGGCAATCGATGTGGACATAC 540 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 GGATAATGCTGGTCAACTACTTCGGCTCGGTCGCACTCACGAAAGCTTGCCTAC--CGTC 598 consensus_5289#1 -------------------------------------CCCGAGGTTNAAGCTGCTACGTC 23 * *** ** * **** consensus_5289#0 GATGATGGCACGCAAGGAGGGGCGCATCGTGAGCATTTCCAGCGTGCAGGGCAAGTTTGC 658 consensus_5289#1 GATGATTGCACGCATG-AGGGGCGCATCGTGAGCATTTCCAGCGTGCAGTGCAAGTTTGG 82 ****** ******* * ******************************** ********* consensus_5289#0 CATCCCGCACCGTTCCGCGTACAGTGCATCGAAGCATGCGATGCAAGCGTTCTGCGACAG 718 consensus_5289#1 CATCCCGCAC-GTTCCGCGTACAGTGCATNGAAGCATGCGATGCAAGCGTTCTGCGACAG 141 ********** ****************** ****************************** consensus_5289#0 CTTGCGGGCCGAGGTGGCGAAG-GATAACATCAAGGTGACGCTG-ATATC-GCCCGGTTA 775 consensus_5289#1 CTTGCGGGCCGAGGTGGCGAAGTGATAACATCAAGGTGACGCTGGATATCTGCCCGGTTA 201 ********************** ********************* ***** ********* consensus_5289#0 CATCAATA-CGGC-GCTGTCACTGAACG--CGCTTACCG--GGACC--GGTGCATCGTAT 827 consensus_5289#1 CATCAATATCGGCTGCTGTCACTGAACTGCTGCTTATCGTTGAACCTGGATGCATCNGCT 261 ******** **** ************* ***** ** * *** * ****** * consensus_5289#0 GGCAAAATGGACGCCGCAACGGCGGGTGGCGCATCGCCCCAGGACACAGCGTCCAGCATA 887 consensus_5289#1 ATGTGCCAAGAAATTGTGACTGCCTGCCAACTGTGACNGTGGGGTGTGCTGCGAATCTGA 321 ** * ** ** * * * ** * * * * consensus_5289#0 CTGAAGGCGATCGCGCGGGACGAAAAGGATGTTATGCTGGCGCCGATTGCTCCGCGCGCA 947 consensus_5289#1 CTCCCAGTGAACACAAGCGTCCAA--GCATAACTTGATAG-GCTGAT--CCGCGCTGGTG 376 ** * ** * * * * * ** * ** ** * * ** *** * *** * consensus_5289#0 GCCTACTGGTTGCGCCACCTGGAGCCTTCCGTNTACTTCTGGATAATGAAGAAACGGGCG 1007 consensus_5289#1 ACTGAAAAAGGATGTTTATTGCGTTGTGCTGGCCGCAGTTGCGTCCTGGCGCTGCAGCC- 435 * * * ** * * * * ** * ** * * * * consensus_5289#0 GAAAAACTAAACTCCACGTAAACAAACACCAAAGAACGACAAACCAACCTACACATTCTT 1067 consensus_5289#1 -TACCTTGTGGTTTTGGCCGGGCCAACCCTT----GTGGCAAGGC--CCTATCCCGGTTT 488 * * * *** * * *** * **** * ** consensus_5289#0 TCTATTCCTTTCATTTCAATCGACAACGGGTGTGTGACCATGGCAGGGCGCATTATATGC 1127 consensus_5289#1 TACCTTCCTTGTGGAGTTA----------------------------------------- 507 * ****** * consensus_5289#0 TCTTNCCCATTGTNAGTTTACAATTATTGGTAGCTATTTAAAACTATACGCTTNCCACCC 1187 consensus_5289#1 ------------------------------------------------------------ consensus_5289#0 CGAA 1191 consensus_5289#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||