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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1340 fasta sequence
[TTTAGGGAGCACCGGGANCACCGGGGGGTTGTGAGAGGAGTTGTTTTTTGGAGGTTTCTTTGGATACGATACGGTGTACGGTCGATGGCTACTGTGCTTCGTCACATTGGCACGTTTGGTTTTATTTGCAGTTGACGGCGTTATGGCATCGTAGTTGTCTGGGAAGGTGAAACAGCCTACTTTGTTGAGGTTTTCATTATCTTCGATCCGATAAGGCAGTTGGTGCGATAGGGCGGTATATATTAATTGCAACCAAATGCACTGTTTTAGCTGATAAGAGTGCGCCTGACTGATGCGAAGGAGTCTATTCGTTGGGGTGCATACACAACCCTGTATCTTAATCCCGCGTCGCTATTGCCTTCGAAATACAAATCCAATTCTTTGTATGTTTGAGATGATTCAGCATCATCTGAACGCTTGCTTGACAAAACTGCACACACTTCCTTGACTATCTAACAAGGAACTGGTCTCCGTCATTTCCCTCTATGAGGAAGACTTTCNTGTTTACATTTCCTTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATACCCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTACCGCCAGCAGGCCCAGCACCAGGATTGCACGACATTGGCGGCACACGTTTGTTCTCCGGGTTTGTTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACCCTCCAACCGTTGCTGGATCACTTTATCTCGATCTCGGTGTATCAATTTTTCTCCTCTCCACAAACGCCATACAAAAACGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGCGTGTAAATTTTTTCGCGGCTTTTTCCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCGCGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACAGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTACTACTGCTGCTAGCACTGATTACCACCGCCGTCCATGCTAGAACCCCACGCGTCCGCCCACGCGTCCGCGG]
[+] EMBL BX626460 [TTTAGGGAGCACCGGGANCACCGGGGGGTTGTGAGAGGAGTTGTTTTTTGGAGGTTTCTTTGGATACGATACGGTGTACGGTCGATGGCTACTGTGCTTCGTCACATTGGCACGTTTGGTTTTATTTGCAGTTGACGGCGTTATGGCATCGTAGTTGTCTGGGAAGGTGAAACAGCCTACTTTGTTGAGGTTTTCATTATCTTCGATCCGATAAGGCAGTTGGTGCGATAGGGCGGTATATATTAATTGCAACCAAATGCACTGTTTTAGCTGATAAGAGTGCGCCTGACTGATGCGAAGGAGTCTATTCGTTGGGGTGCATACACAACCCTGTATCTTAATCCCGCGTCGCTATTGCCTTCGAAATACAAATCCAATTCTTTGTATGTTTGAGATGATTCAGCATCATCTGAACGCTTGCTTGACAAAACTGCACACACTTCCTTGACTATCTAACAAGGAACTGGTCTCCGTCATTTCCCTCTATGAGGAAGACTTTCNTGTTTACATTTCCTTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGAT ]
[-] EMBL BM642743 [ CTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATACCCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTACCGCCAGCAGGCCCAGCACCAGGATTGCACGACATTGGCGGCACACGTTTGTTCTCCGGGTTTGTTGTTTGTTTGTGTGTGTGTGTGTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACCCTCCAACCGTTGCTGGATCACTTTATCTCGATCTCGGTGTATCAATTTTTCTCCTCTCCACAAACGCCATACAAAAACGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGCGTGTAAATTTTTTCGCGGCTTTTTCCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCGCGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACAGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTACTACTGCTGCTAGCACTGATTACCACCGCCGTCCATGCTAGAACCCCACGCGTCCGCCCACGCGTCCGCGG]
consensusID : consensus_5292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[TTTTTTAGCGACTTTGACGTTGTAAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACGCTCCAACCGTTGCTGGAACACTTTATCTCGATCTCGTTGTATCAATTTTTCTCCTCTCCACAAGCGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGTGTGTAAATTTTTTCGCGGCTTTTTTCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCACGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACGGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTGCTGCTGCTGCTAGCACTGATTACCACCGCGG]
[-] EMBL BM642170 [TTTTTTAGCGACTTTGACGTTGTAAATTCTCAACGATCAGTGCAGCAGTTTGTAAAACGCTCCAACCGTTGCTGGAACACTTTATCTCGATCTCGTTGTATCAATTTTTCTCCTCTCCACAAGCGCACACACGCAACGGGTTTTTAAAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAATCACTGCCACTTGAAATCACCTATTTTGTGTGTAAATTTTTTCGCGGCTTTTTTCCGGCCCACTGCCACTTTCGCACACGCCACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCACGCAGTTCGACACCGAGGACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACGGCAAGCAGTTGCTGCTGGTCTTTAAAAATGCTTCCACTACTACTACTGCTGCTGCTGCTAGCACTGATTACCACCGCGG]
consensusID : consensus_5292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CACGAGGAAGACTTTCTTGTTTACATTTCCCTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATAACCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTGCCGCCAGCAGGCCCAGCACCAGGGTTGCACGACATTGGCGGCACACGTTTGTTCCTCGGGTTTGTTGTTTGTTTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCCGG]
[-] EMBL BM637726 [CACGAGGAAGACTTTCTTGTTTACATTTCCCTGCTCTCCAGCCGTCCATTAAACTCGCCCGCGTGACATCTTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCACAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGGCGACAAATCGTATGCCTCACTGGCGTATGCCAGCTTCGTTCAGCCGGAGAGTGATAACCTCAGCGAAGGCGAAGAAGAGGCGCTTTGGCATGGTTGTCGTGCCGCCAGCAGGCCCAGCACCAGGGTTGCACGACATTGGCGGCACACGTTTGTTCCTCGGGTTTGTTGTTTGTTTGTGTGTGCGTTTTTTGCGACTTTGACGTTGTCAATTCTCAACGATCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5292#0 TTTAGGGAGCACCGGGANCACCGGGGGGTTGTGAGAGGAGTTGTTTTTTGGAGGTTTCTT 60
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TGGATACGATACGGTGTACGGTCGATGGCTACTGTGCTTCGTCACATTGGCACGTTTGGT 120
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TTTATTTGCAGTTGACGGCGTTATGGCATCGTAGTTGTCTGGGAAGGTGAAACAGCCTAC 180
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TTTGTTGAGGTTTTCATTATCTTCGATCCGATAAGGCAGTTGGTGCGATAGGGCGGTATA 240
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TATTAATTGCAACCAAATGCACTGTTTTAGCTGATAAGAGTGCGCCTGACTGATGCGAAG 300
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 GAGTCTATTCGTTGGGGTGCATACACAACCCTGTATCTTAATCCCGCGTCGCTATTGCCT 360
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TCGAAATACAAATCCAATTCTTTGTATGTTTGAGATGATTCAGCATCATCTGAACGCTTG 420
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 CTTGACAAAACTGCACACACTTCCTTGACTATCTAACAAGGAACTGGTCTCCGTCATTTC 480
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ---------------------------------TTTTTTAGCGACTTTGACGTTGTAAAT 27
consensus_5292#0 CCTCTATGAGGAAGACTTTCNTGTTTACATTTCCTTGCTCTCCAGCCGTCCA-TTAAACT 539
consensus_5292#2 ----CACGAGGAAGACTTTCTTGTTTACATTTCCCTGCTCTCCAGCCGTCCA-TTAAACT 55
consensus_5292#1 TCTCAACGATCAGTGCAGCAGTTTGTAAAACGCTCCAACCGTTGCTGGAACACTTTATCT 87
* ** * * * * ** * * * * ** ** * **
consensus_5292#0 CGCCCGCGTGACATC--TTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCA 597
consensus_5292#2 CGCCCGCGTGACATC--TTCAATCCTGCGTCAAAGTCAAAGGCACCAGATCACTCATCCA 113
consensus_5292#1 CGATCTCGTTGTATCAATTTTTCTCCTCTCCACAAGCGCACACACGCAACGGGTT-TTTA 146
** * *** *** ** * * ** * * * *** * * * *
consensus_5292#0 CAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACG-CGACAAATCGTAT 656
consensus_5292#2 CAGTTACCCCCGCGGGTGGTCAGAACAGATGCGTCCCCGTTTGACGGCGACAAATCGTAT 173
consensus_5292#1 AAGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAATCACTGCCA-CTTGAAATCACCT 205
** * * * ** * * ** * ** * * ***** *
consensus_5292#0 GCCTCACTGGCGTATGCCA--GCTTCGTTCAGCCGGAGAGTGATACCCTCAGCGAAGGCG 714
consensus_5292#2 GCCTCACTGGCGTATGCCA--GCTTCGTTCAGCCGGAGAGTGATAACCTCAGCGAAGGCG 231
consensus_5292#1 ATTTTGTGTGTAAATTTTTTCGCGGCTTTTTTCCGGCCCACTGCCACTTTCGCACACGCC 265
* * ** ** * ** **** * * ** * **
consensus_5292#0 AAGAAGA--GGCGCTT-TGGCATGGTTGTCGTAC-CG--CCAGCAGGCCCAGCACC-AGG 767
consensus_5292#2 AAGAAGA--GGCGCTT-TGGCATGGTTGTCGTGC-CG--CCAGCAGGCCCAGCACC-AGG 284
consensus_5292#1 ACACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCACGCAGTTCGACACCGAGG 325
* ** * ** *** * * * ** ** * * **** ***
consensus_5292#0 ATTGCA---CGACATTG---GCGGCACACGTTTGTTCTCCGGGTTTGTTGTTTGTTTGTG 821
consensus_5292#2 GTTGCA---CGACATTG---GCGGCACACGTTTGTTCCTCGGGTTTGTTGTTTGTTTGTG 338
consensus_5292#1 ACTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACGGCAAGCAGTTGCTGCTGG 385
**** ** * * ** *** * ** ** * *** * *
consensus_5292#0 TGTGTGTGTGTGTGTGTGCGTTTTTTGCGACT-TTGACGTTGTCAATTCTCAACGATCAG 880
consensus_5292#2 TG--------------TGCGTTTTTTGCGACT-TTGACGTTGTCAATTCTCAACGATCCG 383
consensus_5292#1 TCTTTAAAAATGCTTCCACTACTACTACTGCTGCTGCTGCTAGCACTGATTACCACCGCG 445
* * * * * ** ** * * ** * * * * *
consensus_5292#0 TGCAGCAGTTTGTAAAACCCTCCAACCGTTGCTGGATCACTTTATCTCGATCTCGGTGTA 940
consensus_5292#2 G----------------------------------------------------------- 384
consensus_5292#1 G----------------------------------------------------------- 446
consensus_5292#0 TCAATTTTTCTCCTCTCCACAAACGCCATACAAAAACGCACACACGCAACGGGTTTTTAA 1000
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 AGAAAAACAAACAAACAGTAAAACCAAAAAAAAAAAATCACTGCCACTTGAAATCACCTA 1060
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TTTTGCGTGTAAATTTTTTCGCGGCTTTTTCCCGGCCCACTGCCACTTTCGCACACGCCA 1120
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 CACTGACTGCTACTAGCAGCACACCAGACACACGCGGTTCGCGCAGTTCGACACCGAGGA 1180
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 CTGCAAGCCGGCCCCGAGAGCAACACGCAGCATTTTCCACAGCAAGCAGTTGCTGCTGGT 1240
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 CTTTAAAAATGCTTCCACTACTACTACTACTACTGCTGCTAGCACTGATTACCACCGCCG 1300
consensus_5292#2 ------------------------------------------------------------
consensus_5292#1 ------------------------------------------------------------
consensus_5292#0 TCCATGCTAGAACCCCACGCGTCCGCCCACGCGTCCGCGG 1340
consensus_5292#2 ----------------------------------------
consensus_5292#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||