These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1005 fasta sequence [CCGGATCGGTGGACGTGTGTAAAGCGGGTGAGAAAGCGACCCCGATTTTTTTGTGTTCTTTTTGCTTGCTTGCGTATCCGTGCTTATCCGTTGGTCACCAGCAAACCACCACTACGCCAGCAACGCCAACTTCGACCTGACAGCAGATCGACACGACACTGTGATGGCACTGGCTCGCCACCACTACTGCTGCTGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCCAGTTTCGGTTCGGCGGACTATTCCACCAGACCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAACGATTTACACCATTTAAGGCAAAAACACGTCTCTCGTTCGGGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGCCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGACACAGGACGGGTTTTGGAAAGGCTTTTTTTCCACCTTTTTGCTTGGTTCACCATCAGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGAGCGCTTGTGAAGAGCGCAAGGCAAGAGAAGCAAATAGTTGTGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGCAACGTATTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTTGTGTTAATTTTAACTCTAAATATGTAACGAATAATGTTTACCCAAGTTTAGTGTAAATTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCAGCAGGCAAGCAAACACCTGGCGTTATGTGCTGGTTTA] [+] EMBL BM599973 [CCGGATCGGTGGACGTGTGTAAAGCGGGTGAGAAAGCGACCCCGATTTTTTTGTGTTCTTTTTGCTTGCTTGCGTATCCGTGCTTATCCGTTGGTCACCAGCAAACCACCACTACGCCAGCAACGCCAACTTCGACCTGACAGCAGATCGACACGACACTGTGATGGCACTGGCTCGCCACCACTACTGCTGCTGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCCAGTTTCGGTTCGGCGGACTATTCCACCAGACCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAACGATTTACACCATTTAAGGCAAAAACACGTCTCTCGTTCGGGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGCCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGACACAGGACGGGTTTTGGAAAGGCTTTTTTTCCACCTTTTTGCTTGGTTCACCATCAGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGAGCGCTTGTGAAGAGCGCAAGGCAAGAGAAGCAAATAGTTGTGATG ] [+] EMBL BX607826 [ gtGCTCGCCACCACTACTGCTGCTGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCCAGTTTCGGTTCGGCGGACTATTCCACCAGACCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAACGATTTACACCATTTAAGGCAAAAACACGTCTCTCGTTCGGGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGCCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGACACAGGACGGGTTTTGGAAAGGCTTTTTTTCCACCTTTTTGCTTGGTTCACCATCAGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGAGCGCTTGTGAAGAGCGCAAGGCAAGAGAAGCAAATAGTTGTGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGCAACGTATTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTTGTGTTAATTTTAACTCTAAATATGTAACGAATAATGTTTACCCAAGTTTAGTGTAAATTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCAGCAGGCAAGCAAACACCTGGCGTTATGTGCTGGTTTA] consensusID : consensus_5293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [GACGGTTNACATCTCGGGGGCAGCATTCTNGACGCTCTTNGNGCGACACAGTGACGAGATAANNGAGAAATTGCTGAAAGCAACTATTNCAGCCTTGGTTGCACGAGTCACAACAATGATCGACAGTATTCGGCNCGGNGGAATCGGCAAAGCCTAGAGTACTGTGATNTTGAAGTNCCTNCTCTTTACTTCTGTCTGTGTGNAAGTAGGAGCGCTNTGTGAAGAGCGCAAGGGGNAGAGAAGCAAATAGTTGTNGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGNAACGTATTTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTGTCGTNNAATTTTAACTCTAACATATGTANACGAATAATGTTTACCAAGTTTCAGTGTACATNTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCCAGCAGGCAAGCCAAACACCTGGCGTTCATGTTGCTTGGTTTNATGCACTTGAAGCCAAAAAATCTTGNCGGCAGCTGGNCCATGGTAGAGAATCCACCAATAAGAACATANCTATATNCGGCNCATATTGGAATCACATTNGTTAGNAGGNGNGGTTAGAAACCAACCCATTTG] [+] EMBL AL930031 [GACGGTTNACATCTCGGGGGCAGCATTCTNGACGCTCTTNGNGCGACACAGTGACGAGATAANNGAGAAATTGCTGAAAGCAACTATTNCAGCCTTGGTTGCACGAGTCACAACAATGATCGACAGTATTCGGCNCGGNGGAATCGGCAAAGCCTAGAGTACTGTGATNTTGAAGTNCCTNCTCTTTACTTCTGTCTGTGTGNAAGTAGGAGCGCTNTGTGAAGAGCGCAAGGGGNAGAGAAGCAAATAGTTGTNGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTGTGCGAATTGNAACGTATTTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTGTCGTNNAATTTTAACTCTAACATATGTANACGAATAATGTTTACCAAGTTTCAGTGTACATNTTGTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCCAGCAGGCAAGCCAAACACCTGGCGTTCATGTTGCTTGGTTTNATGCACTTGAAGCCAAAAAATCTTGNCGGCAGCTGGNCCATGGTAGAGAATCCACCAATAAGAACATANCTATATNCGGCNCATATTGGAATCACATTNGTTAGNAGGNGNGGTTAGAAACCAACCCATTTG] consensusID : consensus_5293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CAGATCCCCGAGTTAACTGTGATTGACTGGTCGCCACATATGGTGTGTGCTGCTGATCCGTGCAGTCCAGAAAACGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCAGTTTCGGTTCGGTGGATATCCAACAGAACAACCCCTTCCCCAACAGCAGAAAAGAAAGTACGGGCAGGGAGTGACGATTTACACCATTTATGGCAAACACGTCTCTCGTTCGAGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGGCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGAACACAGGACGGGTTTTGGAAAGGCTTTTTTGTNCACCTTTTGCGTATGGGTTCACCATCAGGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGGAGCGCTTGTTGAAGAGCGCAAGGCAGAGAAGCACAATCAGTCTGTGATGCGGGNCGAGCATCACTGGGAGAGNCTGCACA] [+] EMBL AL930112 [CAGATCCCCGAGTTAACTGTGATTGACTGGTCGCCACATATGGTGTGTGCTGCTGATCCGTGCAGTCCAGAAAACGGGTCCGGTCCACCTTTCCAATAAGGATTGGTGCTGGACGGCTGCAGTTTCGGTTCGGTGGATATCCAACAGAACAACCCCTTCCCCAACAGCAGAAAAGAAAGTACGGGCAGGGAGTGACGATTTACACCATTTATGGCAAACACGTCTCTCGTTCGAGCTGGTTCGTCAGGGGAATGTTCGGACCGTTTGGCATCGTTACGGGCACATCTCGGGCGTTTCGGACGCGCTTCGTGCGAACACAGGACGGGTTTTGGAAAGGCTTTTTTGTNCACCTTTTGCGTATGGGTTCACCATCAGGCAACGTCGCGTTTGGCCGGAGAATCGCAAAGCCTGCTTTGGTGACATTTGTCCTTCTTTTACTCTGTCTGTGCCAAGTGGGAGCGCTTGTTGAAGAGCGCAAGGCAGAGAAGCACAATCAGTCTGTGATGCGGGNCGAGCATCACTGGGAGAGNCTGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5293#0 ----CCGGATCGGTGGACGTGTGTAAAGCGGGTGAGAAAGCGACCCCGATTTTTTTGTGT 56 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 GACGGTTNACATCTCGGGGGCAGCATTCTNGACGCTCTTNGNGCGACACAGTGACGAGAT 60 consensus_5293#0 TCTTTTTGCTTGCTTGCGTATCCGTGCTTATCCGTTGGTCACCAGCAAACCACCACTACG 116 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 AANNGAGAAATTGCTGAAAGCAACTATTNCAGCCTTGGTTGCACGAGTCACAACAATGAT 120 consensus_5293#0 CCAGCAACGCCAACTTCGACCTGACAGCAGATCGACACGACA-CTGTGATGGCACTGGCT 175 consensus_5293#2 ---------------------------CAGATCCCCGAGTTAACTGTGATTG-ACTGG-T 31 consensus_5293#1 CGACAGTATTCGGCNCGGNGGAATCGGCAAAGCCTAGAGTACTGTGATNTTGAAGTNCCT 180 ** * * * ** * * * * * consensus_5293#0 CGCCACCACTACTGC-TGC-TGCTGATCCGTGCGGTCCAGAAACCGGGTCCGGTCCACCT 233 consensus_5293#2 CGCCACATATGGTGTGTGC-TGCTGATCCGTGCAGTCCAGAAAACGGGTCCGGTCCACCT 90 consensus_5293#1 NCTCTTTACTTCTGTCTGTGTGNAAGTAGGAGCGCTNTGTGAAGAGCGCAAGGGGNAGAG 240 * * ** ** ** * * ** * ** * * ** * consensus_5293#0 TTCCAA-TAAGGATTGGTGCTGGACGGCT-----GCCAGTTTCGGTTCGGCGGACTATTC 287 consensus_5293#2 TTCCAA-TAAGGATTGGTGCTGGACGGCT-----GC-AGTTTCGGTTCGGTGGATA--TC 141 consensus_5293#1 AAGCAAATAGTTGTNGATGCGGGAGAGATAGTGGGAGAGTTGCAAATTGGGAAGTGATTG 300 *** ** * * *** *** * * * **** * * ** * consensus_5293#0 CACCAGA-CCACCCCCTTCCCCAACCAGCAGAAAAGAAAGTACGGCGCAGGGAGTAA--- 343 consensus_5293#2 CAACAGA-ACAACCCCTTCCCCAAC-AGCAGAAAAGAAAGTACGG-GCAGGGAGTGA--- 195 consensus_5293#1 TGCGAATTGNAACGTATTTGGCAAA-TGCATGAAAGATGCGCCAAGATGTGCAGTCATCT 359 * * * ** *** *** ***** * * *** * consensus_5293#0 -CGATTTACACCATTTAAGGCAAAAACAC--GTCTCTCGTT-CGGGCTGGTTCGTCAGGG 399 consensus_5293#2 -CGATTTACACCATTTATGGCAAA--CAC--GTCTCTCGTT-CGAGCTGGTTCGTCAGGG 249 consensus_5293#1 TCAACGTTCAAAAGCAGTGTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTAC 419 * * * ** * * * * ** ** * * ** ** * ** consensus_5293#0 GAATGTTCGGACCGTTTGCCAT----CGTTACGGGCAC--ATCTCGGGCGTTTCGGACGC 453 consensus_5293#2 GAATGTTCGGACCGTTTGGCAT----CGTTACGGGCAC--ATCTCGGGCGTTTCGGACGC 303 consensus_5293#1 ATCTGTTCGGTTAAAGTGATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTGTCGT 479 ******* ** * * * ** *** * ***** * ** consensus_5293#0 GC----TTCGTGCGA-CACA---GGACGGGTTTTG---GAAAGGCTTTTTTTCCACCTTT 502 consensus_5293#2 GC----TTCGTGCGAACACA---GGACGGGTTTTG---GAAAGGCTTTTTTGTNCACCTT 353 consensus_5293#1 NNAATTTTAACTCTAACATATGTANACGAATAATGTTTACCAAGTTTCAGTGTACATNTT 539 ** * * ** * *** * ** * * ** * ** consensus_5293#0 TTGCTT-----------GGTTCAC-CATCAG-CAACG--TCGCGTTTGGCCGGAGAATCG 547 consensus_5293#2 TTGCGTA--------TGGGTTCAC-CATCAGGCAACG--TCGCGTTTGGCCGGAGAATCG 402 consensus_5293#1 GTGATTAGCTTTCTTTAGGTACGTTCATTGCGCTTTGCTTTACGCCCAGCAGGCAAGCCA 599 ** * *** * *** * * * ** ** ** * * consensus_5293#0 CAAAGCCTGCTTTG-TGACATTTGTCCTTCT----TTTACTCTGTCTGTGCCAAGTGG-A 601 consensus_5293#2 CAAAGCCTGCTTTGGTGACATTTGTCCTTCT----TTTACTCTGTCTGTGCCAAGTGGGA 458 consensus_5293#1 AACACCTGGCGTTCATGTTGCTTGGTTTNATGCACTTGAAGCCAAAAAATCTTGNCGGCA 659 * * * ** ** ** *** * * ** * * * ** * consensus_5293#0 GC--GCTTGT-GAAGAGCGCAAGGCA-AGAGAAGCA-AATAGT-TGTGATGCGGGAGAGA 655 consensus_5293#2 GC--GCTTGTTGAAGAGCGCAAGGCAGAGAAGCACA-ATCAGTCTGTGATGCGGGNCGAG 515 consensus_5293#1 GCTGGNCCATGGTAGAGAATCCACCA-ATAAGAACATANCTATATNCGGCNCATATTGGA 718 ** * * * **** ** * * ** * * * * * consensus_5293#0 --------TAG---TGGGAGAGT-TGCAAATTGGGAAGTGATTGTGCGAATTGCAACGTA 703 consensus_5293#2 --------CATCACTGGGAGAGNCTGCACA------------------------------ 537 consensus_5293#1 ATCACATTNGTTAGNAGGNGNGGTTAGAAACCAACCCATTTG------------------ 760 ** * * * * * consensus_5293#0 TTGGCAAATGCATGAAAGATGCGCCAAGATGTGCAGTCATCTTCAACGTTCAAAAGCAGT 763 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 ------------------------------------------------------------ consensus_5293#0 GTGATACGCATTAGTGTGTTGTGACGATTCAATGATTCGTACATCTGTTCGGTTAAAGTG 823 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 ------------------------------------------------------------ consensus_5293#0 ATGTGAAGCAATCTTAACATCGATCCTGCGCGTTGTTTGTGTTAATTTTAACTCTAAATA 883 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 ------------------------------------------------------------ consensus_5293#0 TGTAACGAATAATGTTTACCCAAGTTTAGTGTAAATTTGTGATTAGCTTTCTTTAGGTAC 943 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 ------------------------------------------------------------ consensus_5293#0 GTTCATTGCGCTTTGCTTTACGCCAGCAGGCAAGCAAACACCTGGCGTTATGTGCTGGTT 1003 consensus_5293#2 ------------------------------------------------------------ consensus_5293#1 ------------------------------------------------------------ consensus_5293#0 TA 1005 consensus_5293#2 -- consensus_5293#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||