These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 898 fasta sequence [GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGTAATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTTCTTCCCTCCCTTGGGGCTGTCGCGCAATCGC-TTTCCTCTCACATAGTTC-TTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG-GATTGCTGCGCAGCCAGTTGAC-GATCCGCCGGCTGCTCTTCTCCCAGA-TGTACACGTACCCACAG-TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT] [+] EMBL AL933052 [GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGTAATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTTCTTCCCTCCCTTGGGGCTGTCGCGCAATCGC TTTCCTCTCACATAGTTC TTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCTATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAGAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCGTCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCCGAGGTGGCCAGTATTGGGAAGGCCGGGTGCGGATCGAGACAGTTGACCACCTCGCCTGAGATTGCTGCGCAG CAGTTGACNGAT CGACGGCTGCTCTTCTCCCAGATTGTACACGTACCCACAGTTCG TGACA TCA ] [-] EMBL BX620669 [ TCGCGCAACCGCTTTTCTTCTCACATAGTTCTTTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAATTGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG GATTGCTGCGCAGCCAGTTGAC GATCCGCCGGCTGCTCTTCTCCCAGA TGTACACGTACCCACAG TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTT ] [-] EMBL BX627226 [ AGTCNTTCCCGCCCNTTCGCCATAATAACGACCACGCCTGGAGGNCCNTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG GATTGCTGCGCAGCCAGTTGAC GATCCGCCGGCTGCTCTTCTCCCAGA TGTACACGTACCCACAG TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT] consensusID : consensus_5294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGCNACCTCGGGCAATTC] [-] EMBL AL930033 [TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGCNACCTCGGGCAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5294#0 GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGT 60 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 AATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTT 120 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 CTTCCCTCCCTTGGGGCTGTCGCGCAATCGCTTTCCTCTCACATAGTTCTTCCACGCCGA 180 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 ATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCT 240 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 TCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGC 300 consensus_5294#1 ------------------------------------------------------------ consensus_5294#0 CGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCA 360 consensus_5294#1 ------------------TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCA 42 *************************************** ** consensus_5294#0 AA-CGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTG 419 consensus_5294#1 AAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTG 102 ** **************************** * ********************* ** consensus_5294#0 CTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACAC 479 consensus_5294#1 CTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACAC 162 ************************************************************ consensus_5294#0 GGGCGCAGTCTGCTCATCGC-GCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCA 538 consensus_5294#1 GGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCA 222 ******************** *************************************** consensus_5294#0 CGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCAC-CTCG 597 consensus_5294#1 CGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCG 282 ******************************************************* **** consensus_5294#0 CCCGGATTGCTGCGCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACG 657 consensus_5294#1 CCCGGATTGCTGC-CAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACG 341 ************* ********************************************** consensus_5294#0 TACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCC 717 consensus_5294#1 TACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCC 401 ************************************************************ consensus_5294#0 TTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCC 777 consensus_5294#1 TTGATGGTTTGCACGTT-CAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCC 460 ***************** ****************************************** consensus_5294#0 TCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCC 837 consensus_5294#1 TCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGA-TCTCC 519 ****************************************************** ***** consensus_5294#0 GTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCC 897 consensus_5294#1 GTCCCGTCGTG--TGTACACTGCN-AC------CTCGGGCAATTC--------------- 555 *********** ********** ** ** * * * consensus_5294#0 T 898 consensus_5294#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||