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Anopheles gambiae
cluster # 5294 cluster # 5294       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5294#0 length = 898 sequences # 3  
consensus_5294#1 length = 555 sequences # 1  

consensusID : consensus_5294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 898
fasta sequence
                              [GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGTAATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTTCTTCCCTCCCTTGGGGCTGTCGCGCAATCGC-TTTCCTCTCACATAGTTC-TTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG-GATTGCTGCGCAGCCAGTTGAC-GATCCGCCGGCTGCTCTTCTCCCAGA-TGTACACGTACCCACAG-TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT]

[+] EMBL AL933052             [GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGTAATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTTCTTCCCTCCCTTGGGGCTGTCGCGCAATCGC TTTCCTCTCACATAGTTC TTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCTATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAGAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCGTCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCCGAGGTGGCCAGTATTGGGAAGGCCGGGTGCGGATCGAGACAGTTGACCACCTCGCCTGAGATTGCTGCGCAG CAGTTGACNGAT CGACGGCTGCTCTTCTCCCAGATTGTACACGTACCCACAGTTCG TGACA TCA                                                                                                                                                                                                                           ]
[-] EMBL BX620669             [                                                                                                                                           TCGCGCAACCGCTTTTCTTCTCACATAGTTCTTTCCACGCCGAATGTTCGCTTGTCACTACTGCACTGTGGCAAATTGCCCGGCAAAAGTCCTTCCCGCCCCTTCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG GATTGCTGCGCAGCCAGTTGAC GATCCGCCGGCTGCTCTTCTCCCAGA TGTACACGTACCCACAG TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTT                                                                                                         ]
[-] EMBL BX627226             [                                                                                                                                                                                                                                  AGTCNTTCCCGCCCNTTCGCCATAATAACGACCACGCCTGGAGGNCCNTTACGAAGGATTACAGTCTAACCGCGGCCGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCAAACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCCG GATTGCTGCGCAGCCAGTTGAC GATCCGCCGGCTGCTCTTCTCCCAGA TGTACACGTACCCACAG TCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT]


>consensus_5294#0 GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGT AATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTT CTTCCCTCCCTTGGGGCTGTCGCGCAATCGCTTTCCTCTCACATAGTTCTTCCACGCCGA ATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCT TCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGC CGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCA AACGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTGC TGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACG GGCGCAGTCTGCTCATCGCGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACG CCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACCTCGCCC GGATTGCTGCGCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTAC CCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTG ATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCC GCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCCGTC CCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCCT



consensusID : consensus_5294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGCNACCTCGGGCAATTC]

[-] EMBL AL930033             [TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGCNACCTCGGGCAATTC]


>consensus_5294#1 TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCAAAACGCCGGAAAGATGCG GGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTGCTGCGTGCGGCTGTGCAC GTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACACGGGCGCAGTCTGCTCATC GCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCACGCCGGAGGTCGCCAGTA TCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCGCCCGGATTGCTGCCAGCC AGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACGTACCCACAGTCGCTGCCAC TCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCCTTGATGGTTTGCACGTTCA GTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCCTCCGCTTCGGCCAGTTTAAA CAGATAGATATCATCGTCACTGTAGCTGGCAAGATCTCCGTCCCGTCGTGTGTACACTGC NACCTCGGGCAATTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5294#0      GCCGAGGTTATTTTTCTTCCNNNATTAACTACATATAACTTTAATAGTTCCGGGCCCCGT 60
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      AATCACCGCAACGGTGTTACGCACGGTTTTGCGTGTAAATTCAGAACAAAAGGATAATTT 120
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      CTTCCCTCCCTTGGGGCTGTCGCGCAATCGCTTTCCTCTCACATAGTTCTTCCACGCCGA 180
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      ATGTTCGCTTGTCACTACTGCACTGTGGCAAAATGCCCGGCAAAAGTCCTTCCCGCCCCT 240
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      TCGCCATAATAACGACCACGCCTGGAGGGCCCTTACGAAGGATTACAGTCTAACCGCGGC 300
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      CGGACCGGTTCATCGTCGTCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACGCA 360
consensus_5294#1      ------------------TCATCGAGCGTATCGAAAAGGGACGCGCGCGGACCGTACNCA 42
                                        *************************************** **

consensus_5294#0      AA-CGCCGGAAAGATGCGGGACAGGTTCGAGGCCGAGCGGATCGAAAAGTCGTTCCGGTG 419
consensus_5294#1      AAACGCCGGAAAGATGCGGGACAGGTTCGAGCCGACGCGGATCGAAAAGTCGTTCCGTTG 102
                      ** **************************** *   ********************* **

consensus_5294#0      CTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACAC 479
consensus_5294#1      CTGCGTGCGGCTGTGCACGTTGCGCCGCACGTACCGCTTCAGATCGTTCCACTCGAACAC 162
                      ************************************************************

consensus_5294#0      GGGCGCAGTCTGCTCATCGC-GCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCA 538
consensus_5294#1      GGGCGCAGTCTGCTCATCGCAGCAGCCCCTTCGGCACCCACACCTTGATGTCGTTGTCCA 222
                      ******************** ***************************************

consensus_5294#0      CGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCAC-CTCG 597
consensus_5294#1      CGCCGGAGGTCGCCAGTATCGGGAAGGCCGGATGCGGCTCGAGACAGTTGACCACACTCG 282
                      ******************************************************* ****

consensus_5294#0      CCCGGATTGCTGCGCAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACG 657
consensus_5294#1      CCCGGATTGCTGC-CAGCCAGTTGACGATCCGCCGGCTGCTCTTCTCCCAGATGTACACG 341
                      ************* **********************************************

consensus_5294#0      TACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCC 717
consensus_5294#1      TACCCACAGTCGCTGCCACTCACCACGAACTCCGAGCGCGGTCCGAAGAAGCTGACGCCC 401
                      ************************************************************

consensus_5294#0      TTGATGGTTTGCACGTTGCAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCC 777
consensus_5294#1      TTGATGGTTTGCACGTT-CAGTGGCCCCTGAATCGTTCGGTCGGAATCACCATTTCCGCC 460
                      ***************** ******************************************

consensus_5294#0      TCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGAATCTCC 837
consensus_5294#1      TCCGCTTCGGCCAGTTTAAACAGATAGATATCATCGTCACTGTAGCTGGCAAGA-TCTCC 519
                      ****************************************************** *****

consensus_5294#0      GTCCCGTCGTGGTTGTACACTGCGCACGTGATGCTGGAATAGCTTCGTAGCCCTTCGCCC 897
consensus_5294#1      GTCCCGTCGTG--TGTACACTGCN-AC------CTCGGGCAATTC--------------- 555
                      ***********  **********  **      ** *   *  *                

consensus_5294#0      T 898
consensus_5294#1      -
                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)