These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 899 fasta sequence [AGGCAGAATCGGCACGAGGACATTTTAAAAAATATATGTATGCAGCTAAATCGTTCAAATGGTTAAAGCAAAAACCCCAAAAATTACATTATATAGTGACAAAGCTAAATGTCAGCTCATGGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTCGACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATCCATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGTACAATTACAATGTAAAAACTATGTATCGATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAACAATACAGTCTTTCCCCGAAGTTTACAAGGTTTTCCGATTATAAACTCAAGAACAGAAGGAACACTGTCATTGAAACTTAATCGGATTACATNGTTCCCGCAGTCNTTTGCGATTACCAAATTTCGGCAAGATCCCCGGGATATTCGGTCACAAAACGTTTTTCCAAGGTTAATTCGATCCGCAAATCTTTTGCGAATTGGAATTCCCCGGAAAATTCCTTCAAAAGTTTTCCCGCAAAGCTCTCTGAATTCNTATTCGAT] [+] EMBL BX467557 [AGGCAGAATCGGCACGAGGACATTTTAAAAAATATATGTATGCAGCTAAATCGTTCAAATGGTTAAAGCAAAAACCCCAAAAATTACATTATATAGTGACAAAGCTAAATGTCAGCTCATGGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTCGACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATCCATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGTACAATTACAATGTAAAAACTATGTATCGATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAACAATACAGTCTTTCCCCGAAGTTTACAAGGTTTTCCGATTATAAACTCAAGAACAGAAGGAACACTGTCATTGAAACTTAATCGGATTACATNGTTCCCGCAGTCNTTTGCGATTACCAAATTTCGGCAAGATCCCCGGGATATTCGGTCACAAAACGTTTTTCCAAGGTTAATTCGATCCGCAAATCTTTTGCGAATTGGAATTCCCCGGAAAATTCCTTCAAAAGTTTTCCCGCAAAGCTCTCTGAATTCNTATTCGAT] [+] EMBL BX609743 [ ATGGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTCGACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATCCATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGTACAATTACAATGTAAAAACTATGTATC ATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACA ] consensusID : consensus_5295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence [GAGTNAAACCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCGTGTACAATTACAATGTAAAAACTATGTATCATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAAAATACAGTCTTTCCCCGAGTTACAAGGTTTTCCGATATAACTCAAGACAGAAGGACACTGTCATGAAACTAATCGATAATGTGCCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACGTTTCAAAGTATCGTTCCGCAGTCTTGCGATTGATTCCCGCAGATTCATAAAAGTGTCCCGCAGTCTTGAGTTCTATAGTAA-CCTGTATAATATTCCCAAGCAACATTTTTATTGTACTTCTATCATCAATGCGA-CG--TGTTTTAGATAGTTGAATAAAAAATTTAACTGTACTGATTATTCATGCTAATTGTTACATTATAAGTACCAAAAAGTCTTATTTTGGTAAATCATTACACTGTGGTTCGCGGACAAAAGCTATCGTAGTTTAAAAACTCTTAAAATGGAAATTAATTTCGATTAACATTTTTAATAAGCAGAAAATAAAACATCTTTAAATCATATTTTATAT] [+] EMBL AL930065 [GAGTNAAACCGAGAACATTGCCATAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAATTGGAAGACGTCAAGGGAACTTCTGTGGCAGCATGCTTTAAGGAAAGACGTGTTTAATTACCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCGTGTACAATTACAATGTAAAAACTATGTATCATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAAAATACAGTCTTTCCCCGAGTTACAAGGTTTTCCGATATAACTCAAGACAGAAGGACACTGTCATGAAACTAATCGATAATGTGCCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACGTTTCAAAGTATCGTTCCGCAGTCTTGCGATTGATTCCCGCAGATTCATAAAAGTGTCCCGCAGTCTTGAGTTCTATAGTAA CCTGTATAATATTCCCAAGCAACATTTTTATTGTACTTCTATCATCAATGCGA CG TGTTTT ] [+] EMBL BM620849 [ CAATTACAATGTAAAAACTATGTATCATACTAAGGTGCTGATTAGAGATTTAACCAAAAGATTACATGAGAGAGTTCATCCCTAATTAATTTCTTTTTGATTAACACTTTGACAGTCCTACGATGAAACAAAAAAAAAATCACAGAACCATAATAAAATACAGTCTTTCCCCGAGTTACAAGGTTTTCCGATAGAACTCAAGACAGAAGGACACTGTCATGAATCTAATCGATAATGTGCCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACGTTTTCAAGTATCGTTCCGCAGTCTTGCGATTGATTCCCGCAGATTCATAAAAGTGTCCCGCAGTCTTGAGTTCTATAGTAACCCTGTATAATATTCCCAAGCAACATTTTTATTGTACTTCTATCATCAATGCGACCGTTTGTTTTAGATAGTTGAATAAAAAATTTAACTGTACTGATTATTCATGCTAATTGTTACATTATAAGTACCAAAAAGTCTTATTTTGGTAAATCATTACACTGTGGTTCGCGGACAAAAGCTATCGTAGTTTAAAAACTCTTAAAATGGAAATTAATTTCGATTAACATTTTTAATAAGCAGAAAATAAAACATCTTTAAATCATATTTTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5295#0 AGGCAGAATCGGCACGAGGACATTTTAAAAAATATATGTATGCAGCTAAATCGTTCAAAT 60 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 GGTTAAAGCAAAAACCCCAAAAATTACATTATATAGTGACAAAGCTAAATGTCAGCTCAT 120 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 GGAGACTTTACAGGATTATGAAGTTGTTTTCTATGATGATACAAAAATTATACTTAGTTC 180 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 GACGAATAATGAGATAAAAATGATTGATGGAAGTGGCAAGGTTTATCGAGGATTGGAATC 240 consensus_5295#1 ------------------------------------------------------------ consensus_5295#0 CATATCAGCTATAAACATTACATATCTACATCATTTTCAAGAAACCCGAGAACATTGCCA 300 consensus_5295#1 -------------------------------------GAGTNAAACCGAGAACATTGCCA 23 * ** *************** consensus_5295#0 TAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAAT 360 consensus_5295#1 TAGGATCGAAAAAATGCTGTCCACTGTATCATATTCCGGTAAAACGTTTCCGGTCATAAT 83 ************************************************************ consensus_5295#0 TGGAAGACGTCAAGGGAACTTCTGTGGCAGCATTGCTTTAAGGAAAGACGTGTTTAATTA 420 consensus_5295#1 TGGAAGACGTCAAGGGAACTTCTGTGGCAGCAT-GCTTTAAGGAAAGACGTGTTTAATTA 142 ********************************* ************************** consensus_5295#0 CCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCAGGT 480 consensus_5295#1 CCGGTTTTCTCCACTAAGTGTACGGACTTGATTTAAAAGAAGTTTATTACTATTGCGTGT 202 ******************************************************** ** consensus_5295#0 ACAATTACAATGTAAAAACTATGTATCGATACTAAGGTGCTGATTAGAGATTTAACCAAA 540 consensus_5295#1 ACAATTACAATGTAAAAACTATGTATC-ATACTAAGGTGCTGATTAGAGATTTAACCAAA 261 *************************** ******************************** consensus_5295#0 AGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCC 600 consensus_5295#1 AGATTACATGAGAGAGTTCATCCCTAAATAATTTCTTTTTGATTAACACTTTGACAGTCC 321 ************************************************************ consensus_5295#0 TACGATGAAACAAAAAAAAAATCACAGAACCATAATAACAATACAGTCTTTCCCCGAAGT 660 consensus_5295#1 TACGATGAAACAAAAAAAAAATCACAGAACCATAATAA-AATACAGTCTTTCCCCGAG-- 378 ************************************** ****************** consensus_5295#0 TTACAAGGTTTTCCGATTATAAACTCAAGAACAGAAGGAACACTGTCATTGAAACTTAAT 720 consensus_5295#1 TTACAAGGTTTTCCGAT-ATAA-CTCAAGA-CAGAAGGA-CACTGTCAT-GAAACT-AAT 432 ***************** **** ******* ******** ********* ****** *** consensus_5295#0 CGGATTACATNGTTCCCGCAGTCNTTTGC----GATTACCAAATTTCGGCAAGATCCCCG 776 consensus_5295#1 CG-ATAATGTG----CCGCAGTCTTGCGATACAAATTCGCAGATCCCGGTATCGTCAACG 487 ** ** * * ******** * * *** ** ** *** * ** ** consensus_5295#0 GGATATTCGGTCACAAAACGTTTTTCCAAGGTTAATTC-----GATCCGCAAA--TCTTT 829 consensus_5295#1 TTTCAAAGTATCGTTCCGCAGTCTTGCGA--TTGATTCCCGCAGATTCATAAAAGTGTCC 545 * ** * * ** * * ** **** *** * *** * * consensus_5295#0 TGCGAATTGGAATTCCCCGGAAAATTCCTTCAAAAGTTTTCCCGCAAAGCTCTC--TGAA 887 consensus_5295#1 CGCAGTCTTGAGTTCTATAGTAA--CCTGTATAATATTCCCAAGCAACATTTTTATTGTA 603 ** * ** *** * ** * * ** ** * **** * * ** * consensus_5295#0 TTCNTAT--TCGAT---------------------------------------------- 899 consensus_5295#1 CTTCTATCATCAATGCGACGTGTTTTAGATAGTTGAATAAAAAATTTAACTGTACTGATT 663 * *** ** ** consensus_5295#0 ------------------------------------------------------------ consensus_5295#1 ATTCATGCTAATTGTTACATTATAAGTACCAAAAAGTCTTATTTTGGTAAATCATTACAC 723 consensus_5295#0 ------------------------------------------------------------ consensus_5295#1 TGTGGTTCGCGGACAAAAGCTATCGTAGTTTAAAAACTCTTAAAATGGAAATTAATTTCG 783 consensus_5295#0 ----------------------------------------------------- consensus_5295#1 ATTAACATTTTTAATAAGCAGAAAATAAAACATCTTTAAATCATATTTTATAT 836 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||