These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 694 fasta sequence [CCGTGTACTCTCTCTGTGCAAAACATTCGAACCGCTTAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGC-CGT-GA-TTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCGGGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGTACATCCCCGGCATGGACTGGCAGGAGCCGATCAT] [+] EMBL BM576106 [CCGTGTACTCTCTCTGTGCAAAACATTCGAACCGCTTAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCGACGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAATTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGCGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGC CGT GA TTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCGGGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGTACATCCCC ] [+] EMBL BX628322 [ AAACATTCGAACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTTTAGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGTCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTGAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAGGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCACGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGCNCGTNGA TTTGGGTCGATGCACATGCGGACCTAAACACCAACTCAACCTCCCCGTCCGGGAACATTCACGGTATGC ] [+] EMBL BM599636 [ ccgATACAATGTTGCCACGGATAGCTTTGGCGAGGCTGGTAGGCCGCACCGGTGTCACGTTTGGAGCGTCAACCAGCAGCTACTGCACCTCCACGGCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTGTCGGTTTGGGGCCCAAAGCGATCCGTGAAGCTGGCCTGATCGACCACATCCAGGAGATATCGCCCAAGCTCAACATTAAAGATTACGGTGACATCCAGTATGAAGCGCTCAACTTCCAAGGCCGTAAGGTGGGCAACATGAAGAAGCTGGAGCACGTGGCCAGCTGTAGCAGGAACTTATCGCACCAGGTGACGGAGGTGCTGGATGACGATCGGTTGTGCATAACGCTCGGCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATGTGGC CGT AATTTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCGGGAACATTCACGGCATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGACTACTGGCCGTACATCCCCGGCATGGACTGGCAGGAGCCGATCAT] consensusID : consensus_5298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGAACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGGCTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTCCACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGTCCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGCTTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCCGTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGAACTTATCGACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACGGCGGAGATCACGCGATCGCG] [+] EMBL AL930093 [GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGAACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGGCTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTCCACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATTGGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGTCCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGCTTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCCGTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGAACTTATCGACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACGGCGGAGATCACGCGATCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5298#0 -----------------------------CCGT-GTACTCTCTCTGTGCAAAACATTCGA 30 consensus_5298#1 GGGCAGAATTGCCCGAGGTTCATCGCTGGCGGTTGTACTCTCTCTGTGCAAAACATTCGA 60 * ** ************************** consensus_5298#0 ACCGCTTAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCT-TTAGCGAGG 89 consensus_5298#1 ACCGCTCAGTCGCGCAGTGCAGTTACAATACAATGTTGCCACGGATAGCTATTAGCGAGG 120 ****** ******************************************* ********* consensus_5298#0 CTGGTAG-GCCGCACCGGTGT-CACGT-TTGGA-GCGTCAACCAGCAGCTACTGCACCTC 145 consensus_5298#1 CTGGTAGTGCCGCACCGGTGTACACGTATTGGATGCGTCAACCAGCAGCTACTGCACCTC 180 ******* ************* ***** ***** ************************** consensus_5298#0 CACGG--CCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATT 203 consensus_5298#1 CACTGGTCCGATCACTCGTTTGCGACGATCAAACCGAAAAAGATCAACTACGAACGCATT 240 *** * ***************************************************** consensus_5298#0 GGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGT-GTCGGTTTGGGG-- 260 consensus_5298#1 GGAATCGTCGGTGTACCGTTCGACAAGGGCCAGCGCAAGAAGGGTAGTCGGTTANAGGGT 300 ********************************************* ******* ** consensus_5298#0 CCCAAA-GCGATCCGTGAAGCTGGCCTGA-TCGACCACATCCAGGAGATATCGCCCAAGC 318 consensus_5298#1 CCCAAATGCGATCCGTGAAGCTGGCCTGAGTCGAGCAGATCCAGGAGATATCGCCCAAGC 360 ****** ********************** **** ** ********************** consensus_5298#0 T-GAACATTAAAGATTACGGTG---ACATCCAGTATGAA-GCGCTCAACTTCCAGGG-CC 372 consensus_5298#1 TTGAACATTAAAGATTACTGTGCTGACATCCAGTATGAATGCGCTCAANTTCCAGGGGCC 420 * **************** *** ************** ******** ******** ** consensus_5298#0 GTAAGGTG---GGCAAC-ATGAAGAAGCT-GGAGCACGTGGCCAGCT--GTAGCAGG--A 423 consensus_5298#1 GTAATGNGTGGGNCAACCATGAAGAAGCTAGGAGCACGTGGCCAGGCTAGTAGCACGTGA 480 **** * * * **** *********** *************** ****** * * consensus_5298#0 ACTTATCGCACCAGGTGACGGAGGTGCTGGATGACG-ATCGGTTGTGCATAAC-GCT-CG 480 consensus_5298#1 ACTTATCG-ACCAGGTGACGGAGGTGCTGGATGACGCATCGGCTGTGCATAACCGCTACG 539 ******** *************************** ***** ********** *** ** consensus_5298#0 GCGGAGATCATGCGATCGCGATCGGATCGATCGATGGTCATCTGCACCACAGCAAGGATG 540 consensus_5298#1 GCGGAGATCACGCGATCGCG---------------------------------------- 559 ********** ********* consensus_5298#0 TGGCCGTGATTTGGGTCGATGCACATGCGGACCTGAACACCAACTCGACCTCCCCGTCCG 600 consensus_5298#1 ------------------------------------------------------------ consensus_5298#0 GGAACATTCACGGTATGCCGGTGGCGTTGCTTGCCCGCGAGCTGTGCGATTACTGGCCGT 660 consensus_5298#1 ------------------------------------------------------------ consensus_5298#0 ACATCCCCGGCATGGACTGGCAGGAGCCGATCAT 694 consensus_5298#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||