These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [CAAGAATCGCCACGAGGTGTAGTGGTAAAAGTAGCGCAAAGNTGGTGTAGTTGAGCTTTTTTACTTAAAAAAGGACATCATCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCATCGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAACAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTTGCGCATAACACCGTCTGACACGGAAGGTACAATGGCGGGTCAGCTGGCACAGATACGGGGTACAANTCTAACGAGCCGATAAAAGATTCGGGCGACCCTGTAGGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGAAGAAGGTGGACGGTCGCAAGGTAGCCGGCCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCG] [+] EMBL BX469193 [CAAGAATCGCCACGAGGTGTAGTGGTAAAAGTAGCGCAAAGNTGGTGTAGTTGAGCTTTTTTACTTAAAAAAGGACATCATCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCATCGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAACAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTTGCGCATAACACCGTCTGACACGGAAGGTACAATGGCGGGTCAGCTGGCACAGATACGGGGTACAANTCTAACGAGCCGATAAAAGATTCGGGCGACCCTGTAGGGTG ] [+] EMBL BX607696 [ TCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCATCGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAACAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTG TGCGCATAACACC TCTGACACGGA GTAC ATGGCGGGTCAGCTGGCACAG TAC GGGTACAA TCTAACGAG CGAT AAAGATTCGGCCGA CCTGT GGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGAAGAAGGTGGACGGTCGCAAGGTAGCCGGCCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCG] consensusID : consensus_5304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGCCCACGCGTCCGGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCGGTGCAGGAGATAGTGGACCGGGCGCAGCAGGTATTTCAGGACGGGGTGTGCGAAATATGGCTCACGTCCGAAGACACCGGAACGTACGGGCGGGATATCGGTTCGTCGCTGCCGGAACTGCTGTGGCAGCTGGTTGAGGTAATCCCGGAAGGATGCATGATGCGGCTCGGCATGACCAATCCGCCCTACATTCTCGAGCACTTGGACGAGATGGCGAAAATACTGTCGCATCCACGCGTCTACAGCTTCCTGCACATACCGGTGCAGAGCGGCTCGGACGCAATCCTGGGCGAAATGAGGCGCGAATACTGCGTGAAGGATTTCGAGCGCATGGTGGACTTTCTACGCGCCCAAGTACCGGGCATTACGATCGCGACCGACATCATCTGCGGGTTCCCGGGCGAAACGGAAGCGGACTTTGACGACACGCTGGCACTGTGTGAGAAGTACCAGTTCCCAAGCCTGTTCATTAATCAGTTTTTCCCCCGGCCTGGTACGCCGGCAGCGAAGATGACGAAGGTTCCGGCCAATGAGGTGAAAACGCGCACGAAACGGTTGACCGATTTGTTCCATTCGTATGAGCCGTACAAAAAGTACGAAGCCGGTACCAAGCAAACCG] [+] EMBL BM646628 [CCGCCCACGCGTCCGGCGTGCACCTACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCGGTGCAGGAGATAGTGGACCGGGCGCAGCAGGTATTTCAGGACGGGGTGTGCGAAATATGGCTCACGTCCGAAGACACCGGAACGTACGGGCGGGATATCGGTTCGTCGCTGCCGGAACTGCTGTGGCAGCTGGTTGAGGTAATCCCGGAAGGATGCATGATGCGGCTCGGCATGACCAATCCGCCCTACATTCTCGAGCACTTGGACGAGATGGCGAAAATACTGTCGCATCCACGCGTCTACAGCTTCCTGCACATACCGGTGCAGAGCGGCTCGGACGCAATCCTGGGCGAAATGAGGCGCGAATACTGCGTGAAGGATTTCGAGCGCATGGTGGACTTTCTACGCGCCCAAGTACCGGGCATTACGATCGCGACCGACATCATCTGCGGGTTCCCGGGCGAAACGGAAGCGGACTTTGACGACACGCTGGCACTGTGTGAGAAGTACCAGTTCCCAAGCCTGTTCATTAATCAGTTTTTCCCCCGGCCTGGTACGCCGGCAGCGAAGATGACGAAGGTTCCGGCCAATGAGGTGAAAACGCGCACGAAACGGTTGACCGATTTGTTCCATTCGTATGAGCCGTACAAAAAGTACGAAGCCGGTACCAAGCAAACCG] consensusID : consensus_5304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [AGATCGCCCGAGGTTCGCACAAACGCGTCAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTGCGCATAACACCTCTGACACGGAGTACATGGCGGGTCAGCTGGCACAGTACGGGTACAATCTAACGAGCGATAAAGATTCGGCCGACCTGTGGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGANCNAANGTGGACGGTCGCAAGGTAGCCGGCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCAC] [+] EMBL AL930139 [AGATCGCCCGAGGTTCGCACAAACGCGTCAAGTACGCGCGAACCGGCCGAAAGAAACGTCCACCGTCGAAAAGCCGCTCCTGGACAGCGTTATTCCCGAGACGCAGCACATCTACATGAAGACATGGGGCTGTGCGCATAACACCTCTGACACGGAGTACATGGCGGGTCAGCTGGCACAGTACGGGTACAATCTAACGAGCGATAAAGATTCGGCCGACCTGTGGGTGCTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAACGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCAGGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGATCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTGCAGGCGANCNAANGTGGACGGTCGCAAGGTAGCCGGCCAAAGCTGGCCCTGCCGAAGGTGCGCAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGTCTGAACGCGTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5304#0 CAAGAATCGCCACGAGGTGTAGTGGTAAAAGTAGCGCAAAGNTGGTGTAGTTGAGCTTTT 60 consensus_5304#2 ------------------------------------------------------------ consensus_5304#1 ------------------------------------------------------------ consensus_5304#0 TTACTTAAAAAAGGACATCATCAAACCTTCCCCGATGGATATTAGCTGTCAGGACATCAT 120 consensus_5304#2 ------------------------------------------------------------ consensus_5304#1 ----------------------CCGCCCACGCGTCCGGCGTGCACCTACTGCAAGACAAA 38 consensus_5304#0 CGGGGACATTGAAGATTTAATATCATTGGACGACCCGTCGCCGGCAGAACGATACCTCAA 180 consensus_5304#2 ------------------------------------------------------------ consensus_5304#1 GTTTGCCCGGGCCGATCTGGTAAGCTACCCGGTGCAGGAGATAGTGGACCGGG--CGCAG 96 consensus_5304#0 CAAGAAGGATGTAACTGTGCGCACCAAACGCGTCAAAGTACGCGCGAACCGGCCGAAAGA 240 consensus_5304#2 --AGATCGCCCGAG--GTTCGCAC-AAACGCGTCAA-GTACGCGCGAACCGGCCGAAAGA 54 consensus_5304#1 CAGGTATTTCAGGACGGGGTGTGCGAAATATGGCTC---ACGTCCGAAGACACCGGAACG 153 * * * * *** * * *** **** *** ** consensus_5304#0 AACGTCCAC--CGTCGAAAAGCCGCTCCTGGA-CAGCGTTATTCCCGAGACGCAGCACAT 297 consensus_5304#2 AACGTCCAC--CGTCGAAAAGCCGCTCCTGGA-CAGCGTTATTCCCGAGACGCAGCACAT 111 consensus_5304#1 TACGGGCGGGATATCGGTTCGTCGCTGCCGGAACTGCTGTGGCAGCTGGTTGAGGTAATC 213 *** * *** * **** * *** * ** * * * * * * consensus_5304#0 CTACATGAAGACATGGGGCTGTTGCGCATAACACCGTCTGACACGGAAGGTACAATGGCG 357 consensus_5304#2 CTACATGAAGACATGGGGCTGT-GCGCATAACACC-TCTGACACGGA--GTACA-TGGCG 166 consensus_5304#1 CCGGAAGGATGCATGATGCGGCTCGGCATGAC-CAATCCGCCCTACATTCTCGAGCACTT 272 * * * * **** ** * **** ** * ** * * * * * consensus_5304#0 GGTC-AGCTGGCACAGATACGGGGTACAANTCTAACGAGCCGATAAAAGATTCGGGCGAC 416 consensus_5304#2 GGTC-AGCTGGCACAG-TACGGG-TACAAT-CTAACGAGC-GATAAA-GATTCGGCCGAC 220 consensus_5304#1 GGACGAGATGGCGAAAATAC----TGTCGCATCCACGCGTCTACAGCTTCCTGCACATAC 328 ** * ** **** * *** * *** * * * * ** consensus_5304#0 CC-TGTAGGGTG-CTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAA 474 consensus_5304#2 C--TGT-GGGTG-CTGAACAGTTGTACGGTCAAAAACCCGTCGGAAGATACGTTTCGTAA 276 consensus_5304#1 CGGTGCAGAGCGGCTCGGACGCAATCCTGGGCGAAATGAGGCGCGA---ATACTGCGTGA 385 * ** * * * ** * * * * *** * ** * * * *** * consensus_5304#0 CGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCA 534 consensus_5304#2 CGAAATTGAGGCGGCCCATCAAGCCGGAAAGCATGTGGTGGTAGCCGGATGTGTGCCGCA 336 consensus_5304#1 AGGATTTCGAGCGCATGGTGGACTTTCTACGCGCCCAA--GTACCGGGCATTACGATCGC 443 * * ** *** * * * ** *** * ** * * consensus_5304#0 GGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGA 594 consensus_5304#2 GGCCGCCCCGCGGTCCGATTATCTCAAAGGGCTCAGCGTGGTCGGCGTGCAGCAGATCGA 396 consensus_5304#1 GACCGACATCATCTGCGGGTTCCCGGGCGAAACGGAAGCGGACTTTG-ACGACACGCTGG 502 * *** * * ** * * * * ** * * * ** * consensus_5304#0 TCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTG--CAG 652 consensus_5304#2 TCGTGTGGCGGAAGTCGTGGAGGAAACGCTGAAGGGCCACTCGGTCCGGTTGCTG--CAG 454 consensus_5304#1 CACTGTGTGAGAAGTACCAGTTCCCAAGCCTGTTCATTAATCAGTTTTTCCCCCGGCCTG 562 **** ***** * * ** * ** ** * * * * consensus_5304#0 GCGAA-GAAGGTGGACGGTCGCAAGGTAGCCGGCCCAAAGCTGGCCCTGCCGAAGGTGCG 711 consensus_5304#2 GCGANCNAANGTGGACGGTCGCAAGGTAGCCGGCC-AAAGCTGGCCCTGCCGAAGGTGCG 513 consensus_5304#1 GTACGCCGGCAGCGAAGATGACGAAGGTTCCGGCC----AATGA----GGTGAAAACGCG 614 * ** * * * * * ****** ** * *** *** consensus_5304#0 CAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGT-CTGAACGCGTGCACCT 770 consensus_5304#2 CAAAAATCCGCTCATCGAGGTGATTCCCATCAATTCCGGCTGT-CTGAACGCGTGCAC-- 570 consensus_5304#1 CACGAAACGGTTGACCGATTTG--TTCCATTCGTATGAGCCGTACAAAAAGTACGAAGCC 672 ** ** * * * * *** ** * **** * ** ** * ** * * * consensus_5304#0 ACTGCAAGACAAAGTTTGCCCGGGCCGATCTGGTAAGCTACCCG 814 consensus_5304#2 -------------------------------------------- consensus_5304#1 GGTACCAAGCAAACCG---------------------------- 688 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||