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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 863 fasta sequence
[GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACAGCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGAT-ACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA]
[+] EMBL AL932069 [GATCCCCCGAGGTTNGGTTGGAAGTGACTCGAACGCGCAGCGATGGCAGCGGAAGCGACAGCGACAGCACCGACGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGG CACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGA CGGCTGCGCCAT ]
[+] EMBL BM617968 [ ccgAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAAGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCGCGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGAT ACGGTTTCCCCGGGACCGTACGGGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAACGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA]
[+] EMBL BM607120 [ ccgAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGTGCTGGTGCACGGGCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCCGGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGACCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAACCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGCGCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGAGAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCGGATC TTCGC CGGTGTCGAAGATG CTGAA CCCGCTGTGGCCGATAACGGTT CGCGGGACCGTAC GGGCCGTCGCTTGGTG AGCCGGTTCCGGC AGGAC TTTGGGGATGAAGTTTT CCAACG TCATCACG ]
consensusID : consensus_5317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGAACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAGCTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCGCTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC]
[+] EMBL AL930537 [ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGAACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACCAGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGGTGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTGAAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAGATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAGCTGGTGCTCGGCGTGCTGTGCGCGTCGCTGCTGTGGCGTTGCTTGACACCCCTTGCACCGCTGCTCGCCCCGCGCCACGCNGGCCTGGTGTACTGCGACTCGACTGTGCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5317#0 ---------------------------GATCCCCCGAGGTTNGGTTGGAA-GTGACTCGA 32
consensus_5317#1 ATCCCCGAGNTTAATTCATAATATTCTGTAAGCCCGTGTGGCGGTTGGAATGTGACTCGA 60
* **** * ******** *********
consensus_5317#0 ACGCGCAGCGATGG-CAGCG-GAAGC-GACAGCGACAGCACCGAC-GGCAGCATTCGACC 88
consensus_5317#1 ACGCGCAGCGATGNGCAGCGTGAAGCTGACAGCGACAGCACCGACTGGCAGCATTCGACC 120
************* ***** ***** ****************** **************
consensus_5317#0 AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAA-GGCTGGTTCAACTGG 147
consensus_5317#1 AGGCCAGCAGCGGCAGCGAATCGTCCCTGTGTGCGAAGGATAAATGGCTGGTTCAACTGG 180
******************************************** ***************
consensus_5317#0 TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG 207
consensus_5317#1 TGGACGGGCACATCCTTCGACATGTTACGCGCGCTAGAAAAGCGCATCCTTTCCTATCTG 240
************************************************************
consensus_5317#0 AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG 267
consensus_5317#1 AAAACGCCGTACCGGGGTAGCTTCGTCGACGTGGGGCACTGCGTCGGCGAGGCGGACAAG 300
************************************************************
consensus_5317#0 ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCG-TGCTGGTGCACGG 326
consensus_5317#1 ATCTGGACGCTCTCGCTCAACACGGAGTCGCCGAACGTGCCGCTCGCTGCTTGCGTGCAG 360
********************************************** **** * * * *
consensus_5317#0 GCTCGGGGCGGGCGTCGCGCTGTGGGTGCTGAACCTTGACGCGCTCGCCCGGGAGCGGCC 386
consensus_5317#1 CT----GGTGCTCGGCGTGCTGTGCGCGTCGC-TGCTGTGGCG-TTGCTTG---ACACCC 411
** * ** ** ****** * * * ** *** * ** * * **
consensus_5317#0 GGTGTACGCGATCGACGTGCTCGGATTCGGGCGCAGCTCGCGGCCCCGCTTCTCCACCGA 446
consensus_5317#1 CTTGCAC-CGCT--GCTCGCCCCGCGCCACGCN-GGCCTGGTGTACTGCGACTCGACTGT 467
** ** ** * * ** * * * ** ** * * * ** *** ** *
consensus_5317#0 CCCGATGGTGGTCGAGAAGCAGCTGGTGAAATCGATCGAGGAGTGGCGCCGGGAGATGAA 506
consensus_5317#1 GCCTCTGGACTTCCGTGAGCTGCACGCTCTGCNGGCCCCTGCCTATCCTC---------- 517
** *** ** *** ** * * * * * * *
consensus_5317#0 CCTGCAGGAGATGATACTGCTCGGCCACTCGATGGGCGGCTTCATTGCGGCGAGCTACGC 566
consensus_5317#1 ------------------------------------------------------------
consensus_5317#0 GCTCTCCTACCCGGACCGGCTGCGCCATCTCATACTGGCCGACCCGTGGGGCATGCCGGA 626
consensus_5317#1 ------------------------------------------------------------
consensus_5317#0 GAAGCCGAAGGAGTTCGAAAACAATGCGCGCATCCGTTTCTGGCTGCGGCCGATCTTTCG 686
consensus_5317#1 ------------------------------------------------------------
consensus_5317#0 CGGGGTTCCAAAGATGCCTGAACCCCGCTGTGGCCGATACGGTTTCCCCGGGACCGTACG 746
consensus_5317#1 ------------------------------------------------------------
consensus_5317#0 GGGCCGTCCCCTGGTGAACCCGGTTCCGGCAAGGACACTTGTGAATGAAATTTTTCCCAA 806
consensus_5317#1 ------------------------------------------------------------
consensus_5317#0 CGTTCATCCCGGAACGGGGAATGGGACATTTTCCGAAATTAACTTCCCCCAGGGCCA 863
consensus_5317#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||