cluster # 5318

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Anopheles gambiae
cluster # 5318 cluster # 5318 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5318#0 length = 880 sequences # 3

consensus_5318#1 length = 361 sequences # 1

consensusID : consensus_5318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 880
fasta sequence

                              [ATGATTATTATCATGTATATGATCGATTTTTAGACTGACCAATAAAAAAAAAGGATGCGAGGGCGCGCGAGTGAAGTTAAAAACATTTTAAACACACACAAAAATTATATACACTCGCATGTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGAACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATTAGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTGCGATCACCACCGGCTTTCAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAACAAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACGTGAATACGAATTACTAT------TACTGCTACGTTAAACTCTACTACTTATCATTAAAAACACATACTAGACACAAACCATTGTGCTGTGAGAGCGAACGAGCGAGCGAGCGAAAGGCGGGTGCACGCGGACGAGTACGGGAACAGTAGGGGCCCATAATGAGAGAATAAGGTGTGCATGTGACGAATCTGTGAATATATGGGGTAATGTTGTGTAACAAGTTGGGGCGTGTAGGTTTTAGAAAGGATATGATGATGGAGCGAAAGCCGAGCGATCGTGTGTATTTTGTTTGCTGCAAGCGCGCCCGAGAGAGAGAGACACATTGATTTGTATGTACAACCGAGTAGCTGAGAGAGCTATATTTGTGTCGAGATTTGTATGAGATTTGTATGAGAGAGTGTGAGCGAAACACGTGCGTTGATGAAAGTGTGATGATGATGATTGATGATGACTGAATAAAAAAGTA]

[+] EMBL BX618448             [ATGATTATTATCATGTATATGATCGATTTTTAGACTGACCAATAAAAAAAAAGGATGCGAGGGCGCGCGAGTGAAGTTAAAAACATTTTAAACACACACAAAAATTATATACACTCGCATGTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGAACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATTAGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTGCGATCACCACCGGCTTTCAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAACAAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACGTGAATACGAATTACTAT      TACTGCTACGTTAAACTCTACTACTTATCATTAAAAACACATACTAGACACAAACCATTGTGCTGTGAGAGCGAACGAGCGAGCGAGCGAAATGCGGGTGCACGCGGACGAGTACGGGAACAGTAGGGGCCCATAATGAGAGAATAAGGTGTGCATGTGACGAATCTGTGAATATATGGGGTAATGTTGTGTAACAAGTTGGGGCGTGTAGGTTTTAGAAAGGATATGATGATGGAGCGAAAGCCGAGCGATCGTGTGTATTTTGTTTGCTGCAAGCGCGCCCGAGAGAGAGAGACACATTGATTTGTATGTACAACCGAGTAGCTGAGAGAGCTATATTTGTGTCGAGATTTGTATGAGATTTGTATGAGAGAGTGTGAGCGAAACACGTGCG                                                 ]
[+] EMBL BX614169             [                                                                                                                                                                                                                                                                                                                                                                                                                         AAAGAAACACATGAATACGAATTACTATTACTGCTACTGCTACGTTTAACTCTACTACTTATCATTAAAAACACATACTAGACACAAACCATTGTGCTGTGAGAGCGAACGAGCGAGCGAGCGAAAGGCGGGTGCACGCGGACGAGTACGGGAACAGTAGGGGCCCATAAATAGAGAATAAAGTGTGCATGTGACGAATCTGTGAATATATGGGGTAATGTTGTGTAACAAGTTGGGGCGTATAGGTTTTAGAAAGGATATGATGATGGAGCGAAAGCCGAGCGATCGTGTGTATTTTGTTTGCTGCAAGCGCGCCCGAGAGAGAGAGACACATTGATTTGTATGTACAACCGAGTAGCTGAGAGAGCTATATTTGTGTCGAGATTTGTATGAGATTTGTATGAGAGAGTGTGAGCGAAACACGTGCGTTGATGAAAGTGTGATGATGATGATTGATG                   ]
[+] EMBL BX616873             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAACTCTACTACTTATCATTAAAAACACATACTAGACACAAACCATTGTGCTGTGAGAGCGAACGAGCGAGCGAGCGAAAGGCGGGTGCACGCGGACGAGTACGGGAACAGTAGGGGCCCATAATGAGAGAATAAGGTGTGCATGTGACGAATCTGTGAATATATGGGGTAATGTTGTGTAACAAGTTGGGGCGTGTAGGTTTTAGAAAGGATATGATGATGGAGCGAAAGCCGAGCGATCGTGTGTATTTTGTTTGCTGCAAGCGCGCCCGAGAGAGAGAGACACATTGATTTGTATGTACAACCGAGTAGCTGAGAGAGCTATATTTGTGTCGAGATTTGTATGAGATTTGTATGAGAGAGTGTGAGCGAAACACGTGCGTTGATGAAAGTGTGATGATGATGATTGATGATGACTGAATAAAAAAGTA]




>consensus_5318#0
ATGATTATTATCATGTATATGATCGATTTTTAGACTGACCAATAAAAAAAAAGGATGCGA
GGGCGCGCGAGTGAAGTTAAAAACATTTTAAACACACACAAAAATTATATACACTCGCAT
GTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGA
ACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATT
AGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTGCGATCACCACCGGCTTT
CAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAAC
AAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACG
TGAATACGAATTACTATTACTGCTACGTTAAACTCTACTACTTATCATTAAAAACACATA
CTAGACACAAACCATTGTGCTGTGAGAGCGAACGAGCGAGCGAGCGAAAGGCGGGTGCAC
GCGGACGAGTACGGGAACAGTAGGGGCCCATAATGAGAGAATAAGGTGTGCATGTGACGA
ATCTGTGAATATATGGGGTAATGTTGTGTAACAAGTTGGGGCGTGTAGGTTTTAGAAAGG
ATATGATGATGGAGCGAAAGCCGAGCGATCGTGTGTATTTTGTTTGCTGCAAGCGCGCCC
GAGAGAGAGAGACACATTGATTTGTATGTACAACCGAGTAGCTGAGAGAGCTATATTTGT
GTCGAGATTTGTATGAGATTTGTATGAGAGAGTGTGAGCGAAACACGTGCGTTGATGAAA
GTGTGATGATGATGATTGATGATGACTGAATAAAAAAGTA

consensusID : consensus_5318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [CCGAGGNAATATATACACTCGCATGTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGAACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATTAGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTGGATCACCACCGGCTTTCAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAACAAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACATGAATACGAATTACTATTACTGCGTACTGGTACGTTTA]

[+] EMBL AL930563             [CCGAGGNAATATATACACTCGCATGTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGAACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATTAGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTGGATCACCACCGGCTTTCAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAACAAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACATGAATACGAATTACTATTACTGCGTACTGGTACGTTTA]




>consensus_5318#1
CCGAGGNAATATATACACTCGCATGTTTACGAAACATACGAACCAAGGACACAATGCACA
CAACGCTTTTAATGTAAAGTCCGAACACATGACCAAAGACTTTGCAGGAAGAACCTGAAG
AATGACCGACTGCTACGTACTATTAGTTTTAAGTCATTTTTATCATTAAACGGACTGACG
CGGACTGGATCACCACCGGCTTTCAAAAAGCATGATCATCAACATGATCGCGTTCCATTT
GGAGGTACGAACGAACCGAGAACAAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTG
TTAGGACAAGAGAAAGAAACACATGAATACGAATTACTATTACTGCGTACTGGTACGTTT
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5318#0      ATGATTATTATCATGTATATGATCGATTTTTAGACTGACCAATAAAAAAAAAGGATGCGA 60
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      GGGCGCGCGAGTGAAGTTAAAAACATTTTAAACACACACAAAAATTATATACACTCGCAT 120
consensus_5318#1      ------------------------------------CCGAGGNAATATATACACTCGCAT 24
                                                          *  *   * ***************

consensus_5318#0      GTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGA 180
consensus_5318#1      GTTTACGAAACATACGAACCAAGGACACAATGCACACAACGCTTTTAATGTAAAGTCCGA 84
                      ************************************************************

consensus_5318#0      ACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATT 240
consensus_5318#1      ACACATGACCAAAGACTTTGCAGGAAGAACCTGAAGAATGACCGACTGCTACGTACTATT 144
                      ************************************************************

consensus_5318#0      AGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTGCGATCACCACCGGCTTT 300
consensus_5318#1      AGTTTTAAGTCATTTTTATCATTAAACGGACTGACGCGGACTG-GATCACCACCGGCTTT 203
                      ******************************************* ****************

consensus_5318#0      CAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAAC 360
consensus_5318#1      CAAAAAGCATGATCATCAACATGATCGCGTTCCATTTGGAGGTACGAACGAACCGAGAAC 263
                      ************************************************************

consensus_5318#0      AAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACG 420
consensus_5318#1      AAACTCACTCGCAAGCTCCTGAACTGTTACGACGTTGTTAGGACAAGAGAAAGAAACACA 323
                      *********************************************************** 

consensus_5318#0      TGAATACGAATTACTATTACTGC-TACGTTAAACTCTACTACTTATCATTAAAAACACAT 479
consensus_5318#1      TGAATACGAATTACTATTACTGCGTACTGGTACGTTTA---------------------- 361
                      *********************** ***    *  * **                      

consensus_5318#0      ACTAGACACAAACCATTGTGCTGTGAGAGCGAACGAGCGAGCGAGCGAAAGGCGGGTGCA 539
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      CGCGGACGAGTACGGGAACAGTAGGGGCCCATAATGAGAGAATAAGGTGTGCATGTGACG 599
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      AATCTGTGAATATATGGGGTAATGTTGTGTAACAAGTTGGGGCGTGTAGGTTTTAGAAAG 659
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      GATATGATGATGGAGCGAAAGCCGAGCGATCGTGTGTATTTTGTTTGCTGCAAGCGCGCC 719
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      CGAGAGAGAGAGACACATTGATTTGTATGTACAACCGAGTAGCTGAGAGAGCTATATTTG 779
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      TGTCGAGATTTGTATGAGATTTGTATGAGAGAGTGTGAGCGAAACACGTGCGTTGATGAA 839
consensus_5318#1      ------------------------------------------------------------
                                                                                  

consensus_5318#0      AGTGTGATGATGATGATTGATGATGACTGAATAAAAAAGTA 880
consensus_5318#1      -----------------------------------------