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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1235 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTCCCCGGTTACACTCTCACACACGGTTGCACTTTGCTTGTTCGCTCACATGGCTCGAGCCGCTCTTGGAGAAGTGCCTTAGTGAAGTGTTTGTACTGTGTATTATTATTTTTTTTTACTGACTCACTCACCAACCTACCTTTTACATCTTTTTACTATGTACTGCTATTTTTAATATTATTATTGACTACTTTAATGTTAATCTTAACTCGCGCTTAAGTCGCCCCTCTCCCCTCGGATGAGGTGGGGAGGGCGAACCCGAGTCACTCACTCTTCTTTTTTAAGTCAACTTCACCAAAATCTCACTGCCCTATTGTGACTAAGTATTTTTTTTGTTTGTTTGGCTTCCTCCCGCTACTCCGCCTATTTACCACCAATGCACACTTAGCCCAATCGTTCGATTCTTAGTGAGCGAGTGTTATTTAACTACGATTTACTACTACGGAGATGCAAGCGAAAGCGGACACACTCTGTCCGTCGGCCGAACGCGGGGAGGAAGCATTCAA--TTTTTTTAGTTAATTAATTATTATTTTAATCTGTACGAACACT-CCCGC-GCTACTACTTCCTACCCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTA-CCCTGTTGTAAGGAATGTGAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGGAGTAAACGAATCAGCCTCCAAACTGCCAATACTGCCAACGGGCCCAACGGGGCACACGCGCCCTGCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTATCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACGTTGCCTTTGCCCCGTAAACCACCAGAATACAAGCAGCCTTGCAGCATACAGCTAGGGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACCCATCCAAACAGCCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCACTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACCCTTTTTGGTCAGAAACAGCGCAGGAAAGGATACGGAATGATGATTATGATCATTATTATTTTATTATATATTATTATATTATTACGAAATACTTGTTGAACATATTATTGAGGAAAATCATATAAAAACAACTATTTA]
[+] EMBL BM583676 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCCCGGTTACACTCTCACACACGGTTGCACTTTGCTTGTTCGCTCACATGGCTCGAGCCGCTCTTGGAGAAGTGCCTTAGTGAAGTGTTTGTACTGTGTATTATTATTTTTTTTTACTGACTCACTCACCAACCTACCTTTTACATCTTTTTACTATGTACTGCTATTTTTAATATTATTATTGACTACTTTAATGTTAATCTTAACTCGCGCTTAAGTCGCCCCTCTCCCCTCGGATGAGGTGGGGAGGGCGAACCCGAGTCACTCACTCTTCTTTTTTAAGTCAACTTCACCAAAATCTCACTGCCCTATTGTGACTAAGTATTTTTTTTGTTTGTTTGGCTTCCTCCCGCTACTCCGCCTATTTACCACCAATGCACACTTAGCCCAATCGTTCGATTCTTAGTGAGCGAGTGTTATTTAACTACGATTTACTACTACGGAGATGCAAGCGAAAGCGGACACACTCTGTCCGTCGGCCGAACGCGGGGAGGAAGCATTCAA TTTTTTTAGTTAATTAATTATTATTTTAATCTGTACGAACACT CCCGC GCT ]
[+] EMBL BX622938 [ TCCGTCGGCCGAACGCGGGGAGGAAGTATTCAATTTTTTTTTAGTTAATTAATTATTATTTTAATCTGTACGAACACT CCCGC GCTACTACTTCCTACCCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTA CCCTGTTGTAAGGAATGTGAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGGAGTAAACGAATCAGCCTCCAAACTGCCAATACTGCCAACGGGCCCAACGGGGCACACGCGCCCTGCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTATCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACGTTGCCTTTGCCCCGTAAACCACCAGAATACAAGCAGCCTTGCAGCATACAGCTAGGGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACCCATCCAAACAGCCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCACTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACC ]
[-] EMBL BM648560 [ CTGTACGAACACTCCCCGCGGTTACTACTTCCTACCCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTACCCCTGTTGTAAGGAATGTGAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGGAGTAAACGAATCAGCCTCCAAACTGCCAATACTGCCAACGGGCCCAACGGGGCACACGCGCCCTGCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTATCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACGTTGCCTTTGCCCCGTAAACCACCAGAATACAAGCAGCCTTGCAGCATACAGCTAGGGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACTCATCCAAACAGCCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCACTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACCCTTTTTGGTCAGAAACAGCGCAGGAAAGGATACGGAATGATGATTATGATCATTATTATTTTATTATATATTATTATATTATTACGAAATACTTGTTGAACATATTATTGAGGAAAATCATATAAAAACAACTATTTA]
consensusID : consensus_5319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[AGAATNGCCGAGGGNTAGTGTTATTTAACTACGATTTACTACTAACGGAGATGCAGCGAAAGCGGACACACTCTGGTCCGTCTGGTGAACGCGGGGAGGAAGCACTTCATTTCTTTTTCAGTTAATTAACTTATTATTTTAATCTGTACGAACANTTCCCGGNGGCTAACTACTTTCCTTAACCAAAGTCATTCTATCTCCGGGCTCCTTCTACTACCTCCCTGTGTTCCTTCTAAACCCTGGTANGGTACACGCGGAGACTGTTGAGGACTATCGGTTGGTTGGACGCTAAGCAAGAGCCTTAANGGGCGNTTGGTTACCNCGAAACGGCCGCACACCTTGTGCGCGGCCACGCAACGCGCGGANGNCTCAACAACCGGACAATTCCAAAGGCCCTNCCCGACAACAAGNCCTTGGGCGGCCAAACATAAACCTAGGGNGGCCCAAAACACANGGGGGGACANCCCCAACAAACACGANAGTGNTAGGATCCCCATACCAAAACGANCTGGTCCCCCCCCTTAGTNTGCACCTGCGGNCGCANCCGCCACAATTNGGTGGGTTGCCCCCCCCGCATTCTCACGNACACNTCATCATCTCNGTGCGGCTCACNNCGACGCCTCTGGGTATACATCTCNATCACATCGTCAAATTCTCCATCCTCANNNNACTATTACANCACATCACTGCACGTACATNATATACTAAANCAAGCCGTTTNGTTGAACTTTACCCNAAGCCATTCCTTTCCAATTCATTTANCGTCTGGGGCGCCNTATCCCCCCCACGGGCGACTANTACTATCATGCTAATGATCTANGCCAAACGACCCAGGTACCCCGCTGACACNNTTACTACCNTGGGCGCTNCCCTCGTNAACAGCACCCCCGGGGCNAACAGCNCCCCAAAACACCGATGCCGTTNGNTCAGTAGGCCGTAACAAACGAAGCCACGGTCGGTTTAAACCATCGACACACCGCGGCCG]
[+] EMBL AL930586 [AGAATNGCCGAGGGNTAGTGTTATTTAACTACGATTTACTACTAACGGAGATGCAGCGAAAGCGGACACACTCTGGTCCGTCTGGTGAACGCGGGGAGGAAGCACTTCATTTCTTTTTCAGTTAATTAACTTATTATTTTAATCTGTACGAACANTTCCCGGNGGCTAACTACTTTCCTTAACCAAAGTCATTCTATCTCCGGGCTCCTTCTACTACCTCCCTGTGTTCCTTCTAAACCCTGGTANGGTACACGCGGAGACTGTTGAGGACTATCGGTTGGTTGGACGCTAAGCAAGAGCCTTAANGGGCGNTTGGTTACCNCGAAACGGCCGCACACCTTGTGCGCGGCCACGCAACGCGCGGANGNCTCAACAACCGGACAATTCCAAAGGCCCTNCCCGACAACAAGNCCTTGGGCGGCCAAACATAAACCTAGGGNGGCCCAAAACACANGGGGGGACANCCCCAACAAACACGANAGTGNTAGGATCCCCATACCAAAACGANCTGGTCCCCCCCCTTAGTNTGCACCTGCGGNCGCANCCGCCACAATTNGGTGGGTTGCCCCCCCCGCATTCTCACGNACACNTCATCATCTCNGTGCGGCTCACNNCGACGCCTCTGGGTATACATCTCNATCACATCGTCAAATTCTCCATCCTCANNNNACTATTACANCACATCACTGCACGTACATNATATACTAAANCAAGCCGTTTNGTTGAACTTTACCCNAAGCCATTCCTTTCCAATTCATTTANCGTCTGGGGCGCCNTATCCCCCCCACGGGCGACTANTACTATCATGCTAATGATCTANGCCAAACGACCCAGGTACCCCGCTGACACNNTTACTACCNTGGGCGCTNCCCTCGTNAACAGCACCCCCGGGGCNAACAGCNCCCCAAAACACCGATGCCGTTNGNTCAGTAGGCCGTAACAAACGAAGCCACGGTCGGTTTAAACCATCGACACACCGCGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5319#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTCCCCGGTTACACTCTCACACACGGTTGCACT 60
consensus_5319#1 ------------------------------------------------------------
consensus_5319#0 TTGCTTGTTCGCTCACATGGCTCGAGCCGCTCTTGGAGAAGTGCCTTAGTGAAGTGTTTG 120
consensus_5319#1 ------------------------------------------------------------
consensus_5319#0 TACTGTGTATTATTATTTTTTTTTACTGACTCACTCACCAACCTACCTTTTACATCTTTT 180
consensus_5319#1 ------------------------------------------------------------
consensus_5319#0 TACTATGTACTGCTATTTTTAATATTATTATTGACTACTTTAATGTTAATCTTAACTCGC 240
consensus_5319#1 -------------------------------AGAATNGCCGAGGGNTAGTGTTATTTAAC 29
** * * * ** * *** * *
consensus_5319#0 GCTTAAGTCGCCCCTCTCCCCTCGGATGAGGTGGGGAGGGCGAACCCGAGTCACTCACTC 300
consensus_5319#1 ---TA---CGATTTACTACTAACGGA-GATGCAGCGAAAGCGGACACA---CTCTGGTCC 79
** ** ** * **** ** * * ** *** ** * * ** *
consensus_5319#0 TTCTTTTTTAAGTCAACTTCACCAAAATCTCACTGCCCTATTG--TGACTAAGT-ATTTT 357
consensus_5319#1 GTCTGGTGAACGCGGGGAGGA--AGCACTTCATTTCTTTTTCAGTTAATTAACTTATTAT 137
*** * * * * * * *** * * * * * * *** * *** *
consensus_5319#0 TTTTGTTTGTTTGGCTTCCTCCCGCTACTCCGCCTATTTACCACCAATGCACACTTAGCC 417
consensus_5319#1 TTTAATCTGTACGAACANTTCCCGGNGG-CTAACTACTTTCC-TTAAC-CAAAGTCATTC 194
*** * *** * ***** * *** ** ** ** ** * * * *
consensus_5319#0 CAATCGTTCGATTCTTAGTGAGCGAGTGTTATTTAACTACGATTTACTACTACGGAGATG 477
consensus_5319#1 TA-TCTCCGGGCTCCTTCTACTACCTCCCTGTGTTCCTTCTAAACCCTGGTANGG---TA 250
* ** * ** * * * * * ** * * ** ** ** *
consensus_5319#0 CAAGCGAAAGCGGACACACTCTGTCCGTCGGCCGAACGCGGGGAGGAAGCATTCAATTTT 537
consensus_5319#1 CACGCGGAGACTGTTGAGGACTATCGGTTGGTTGGACGCTAAGCAAGAGC---------- 300
** *** * * * ** ** ** ** * **** * ***
consensus_5319#0 TTTAGTTAATTAATTATTATTTTAATCTGTACGAACACTCC-CGCGCTACTACTTCCTAC 596
consensus_5319#1 CTTAANGGGCGNTTGGTTACCNCGAAACGGCCGCACACCTTGTGCGCGGCCACGCAACGC 360
*** * *** * * ** **** **** * ** *
consensus_5319#0 CCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTACCCTGTTGTAAGGAATGT 656
consensus_5319#1 GCGGANG----NCTCAACAACCGGACAATTCCAAAGGCCCTNCCCGACAACAAG--NCCT 414
* *** * ** * * ** *** *** *
consensus_5319#0 GAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGG--AGTAAA 714
consensus_5319#1 TGGGCGGCCAAACATAAACCTAGGGNGGCCCAAAACACANGGGGGGACANCCCCAACAAA 474
* * * ** * ****** * ** * *** ** * * ***
consensus_5319#0 CGAATCAGCCTCCAAACTGCCAA--TACTGCCAACGGGCCCAACGGGGCACACGCGCCCT 772
consensus_5319#1 CACGANAGTGNTAGGATCCCCATACCAAAACGANCTGGTCCCCCCCCTTA-GTNTGCACC 533
* ** * *** * * * * ** ** * * ** *
consensus_5319#0 GCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTA 832
consensus_5319#1 TGCGGNCGCANCCGCCACAATTNGGTGGGTTGCCCCCCCCGCATTCTCACGNACACNTCA 593
*** ** * ** * *** * * ** * *
consensus_5319#0 TCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACG--T 890
consensus_5319#1 TCATCTCNGTGCGGCTCACNNCGACGCCTCTGGGTATACATCTCNATCACATCGTCAAAT 653
**** * * * * * ** * * * * * * * * * * *
consensus_5319#0 TGCCTTTGCCCCGTAAACCACCAGAATACA--AGCAGCCTTGCAGCATACA----GCTAG 944
consensus_5319#1 TCTCCATCCTCANNNNACTATTACANCACATCACTGCACGTACATNATATACTAAANCAA 713
* * * * * ** * * * *** * * * ** *** * *
consensus_5319#0 GGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACCCATCCAAACAG 1004
consensus_5319#1 GCCGTTTNGTTGAACTTTACCCNAAGCCATTCCTTTCCAATTCATTTANCGTCTGGGGCG 773
* ** *** * * * * * ** * * ** *
consensus_5319#0 CCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCA 1064
consensus_5319#1 CCNTATCCCCCCCACGGGCGACTANTACTATCATGCTAATGATCTANGCCAAACGACCCA 833
** ** * * * * ** * * * * * **** *****
consensus_5319#0 CTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACCCTTTTTGGTCAGAAACAGCGCAGGAAA 1124
consensus_5319#1 GGTACCCCGCTGACACNNTTACTACCNTGGGCGCTNCCC--TCGTNAACAGCACCCCCGG 891
** * * * * ** ** ****** *
consensus_5319#0 GGATACGGAATGATGATTATGATCATTATTATTTTATTATATATTATTATATTATTACGA 1184
consensus_5319#1 GGCN----AACAGCNCCCCAAAACACCG------------ATGCCGTTNGNTCAGTAGGC 935
** ** * ** ** ** * * ** *
consensus_5319#0 AATACTTGTTGAACATATTATTGAGGAAAATCATATAAAAACAACTATTTA 1235
consensus_5319#1 CGTAACAAACGAAGCCACGGTCGGTTTAAACCATCGACACACCGCGGCCG- 985
** *** * * * *** *** * * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||