cluster # 5326

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Anopheles gambiae
cluster # 5326 cluster # 5326 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5326#0 length = 814 sequences # 3

consensus_5326#1 length = 559 sequences # 1

consensusID : consensus_5326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 814
fasta sequence

                              [CCGCGATCCGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGGCTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGC-AATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCCACAAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTACCAAAATATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCTAATGAGATAAATTCACGATCGCGCGATTGGAATAAATGTT]

[+] EMBL BM616800             [CCGCGATCCGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGGCTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGC AATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCCACAAAGCACACACATACATAATGCTTCACTCGATG                                                                                                                         ]
[+] EMBL BM614608             [      ccgGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGGCTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGCAAATGGGTCGCTGGCAATTGC                                                                                                                                                                                                                                                 ]
[+] EMBL BM592622             [                                                                                                                                                                                                           ccgGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGC AATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCAACAAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTACCAAAATATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCTAATGAGATAAATTCACGATCGCGCGATTGGAATAAATGTT]




>consensus_5326#0
CCGCGATCCGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGG
CTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCG
ACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCT
CCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGA
CCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGA
CGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCG
ACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGT
TCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCG
GATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAA
GCGCTACTCGCGCAATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAAT
TGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCCAC
AAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTACCAAAAT
ATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCTAATGAG
ATAAATTCACGATCGCGCGATTGGAATAAATGTT

consensusID : consensus_5326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [CAGATCCCCGAGGTTAAATGCATCTTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATCGTTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAATGAACGCAAGCCCCAAAGCGCTACTCGCGCAAT]

[+] EMBL AL931014             [CAGATCCCCGAGGTTAAATGCATCTTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATCGTTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAATGAACGCAAGCCCCAAAGCGCTACTCGCGCAAT]




>consensus_5326#1
CAGATCCCCGAGGTTAAATGCATCTTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATCG
TTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCAT
CTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTCC
GTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGA
ACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCAT
CGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTG
CGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGTGCGCTCGGTGGC
ACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACT
TTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAATGAACGCAAGCCCC
AAAGCGCTACTCGCGCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5326#0      CCGCGATCCGTCTCGCAATGCATCCTTTCGGTC-----CGTCGCTGCTGCTGCTGCTATC 55
consensus_5326#1      CAGATCCCCGAGGTTAAATGCATC-TTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATC 59
                      * *    ***      ******** ********      *  ******************

consensus_5326#0      ATTGGCTACGGTGAACGGTGCGTTCCTATCCAA-TCTAAACGCCACCTGCTTCCGGTGCA 114
consensus_5326#1      GTTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCA 119
                       ** ***************************** **************************

consensus_5326#0      TCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTC 174
consensus_5326#1      TCTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTC 179
                      **************************** *******************************

consensus_5326#0      CGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACG 234
consensus_5326#1      CGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACG 239
                      ************************************************************

consensus_5326#0      AACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCA 294
consensus_5326#1      AACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCA 299
                      **************** *********************************** *******

consensus_5326#0      TCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACT 354
consensus_5326#1      TCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACT 359
                      ************************************************************

consensus_5326#0      GCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTG 414
consensus_5326#1      GCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGG-TGCGCTCGGTG 418
                      ************************************************ ***********

consensus_5326#0      GCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAA 474
consensus_5326#1      GCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAA 478
                      ************************************************************

consensus_5326#0      CTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGC 534
consensus_5326#1      CTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAA-TGAACGCAAGC 537
                      ************************************************ ** ********

consensus_5326#0      CCCAAAGCGCTACTCGCGCAATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGG 594
consensus_5326#1      CCCAAAGCGCTACTCGCGCAAT-------------------------------------- 559
                      **********************                                      

consensus_5326#0      TATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAG 654
consensus_5326#1      ------------------------------------------------------------
                                                                                  

consensus_5326#0      TTCCACAAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTAC 714
consensus_5326#1      ------------------------------------------------------------
                                                                                  

consensus_5326#0      CAAAATATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCT 774
consensus_5326#1      ------------------------------------------------------------
                                                                                  

consensus_5326#0      AATGAGATAAATTCACGATCGCGCGATTGGAATAAATGTT 814
consensus_5326#1      ----------------------------------------