cluster # 5329

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Anopheles gambiae
cluster # 5329 cluster # 5329 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5329#0 length = 676 sequences # 1
consensus_5329#1 length = 644 sequences # 1

consensus_5329#2 length = 572 sequences # 1
consensus_5329#3 length = 566 sequences # 1

consensusID : consensus_5329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTG]

[+] EMBL BX626809             [CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTG]




>consensus_5329#0
CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACA
AAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCG
TGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTA
ACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTGTTTTGTTAGCCATGTAA
GCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGG
CAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGC
AAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTG
TAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACA
AAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATT
CATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAAT
TATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAAAATATGCGAACGAAGGAAC
AGGTTGGCTTGTGCTG

consensusID : consensus_5329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [GGCAGATCCGCACGAGGGTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGTGAAGCATTTGCGCGCGGGTTCAGGTGTAGAAACACCATGGAAACGAAACGTAACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAGCAAATCGT]

[+] EMBL BX467978             [GGCAGATCCGCACGAGGGTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTTGTTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGTGAAGCATTTGCGCGCGGGTTCAGGTGTAGAAACACCATGGAAACGAAACGTAACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAGCAAATCGT]




>consensus_5329#1
GGCAGATCCGCACGAGGGTTTTTTTTATAAATAATAATAATATTTTAACTTTATTTCTTT
GTTGCTTTTTATACACTACTTTTTTGTTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACC
CATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACA
TTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGA
CTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAA
CATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGAT
ATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCT
TGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGA
GTAGAGCAGAGCCCCAACGAGCAAAAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTG
CGTACCTGTGAAGCATTTGCGCGCGGGTTCAGGTGTAGAAACACCATGGAAACGAAACGT
AACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAGCAAATCGT

consensusID : consensus_5329#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAGTACAACACCGCTTACGCGTGCCTATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTAAATAATAGTAATATTTTACCTATATTTCTTTGTTGCTTTTTATACACTACTTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAACAGATATAGGTCGTTTGTTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGCGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTGATTCATTTAAAACATTACTATCCTTGTACCTAT]

[+] EMBL BM589028             [CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAGTACAACACCGCTTACGCGTGCCTATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTAAATAATAGTAATATTTTACCTATATTTCTTTGTTGCTTTTTATACACTACTTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAACAGATATAGGTCGTTTGTTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGCGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTGATTCATTTAAAACATTACTATCCTTGTACCTAT]




>consensus_5329#2
CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACAAAAAAAAGTACAACACCGC
TTACGCGTGCCTATTGAGTGTGTGATATTTCTCGTGTATTATTTTGAGTGCGTGTGTGTG
AGTGTTTTTTTTAAATAATAGTAATATTTTACCTATATTTCTTTGTTGCTTTTTATACAC
TACTTTTTTTGTTTGTTTTGTTAGCCATGTAAGCAAAGAGAGTGAACCCATTCTCCTCTT
CTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCT
AAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATA
GGTCGTGACAGAACAGATATAGGTCGTTTGTTTGTAGCCACACACACGAACATCGTATTG
GAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGCGAGGTGATATACAAACAT
CTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTGA
TTCATTTAAAACATTACTATCCTTGTACCTAT

consensusID : consensus_5329#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [ATCGCCCGAGGTTTTTTGTTTGTTTGTTAGCCATGTAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAACAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGTAGAAACACCATGGAAACGAAACGTAACAGCGGCANCNCANCTCGTAGTNAAG]

[+] EMBL AL931083             [ATCGCCCGAGGTTTTTTGTTTGTTTGTTAGCCATGTAGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAACAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACCTGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGTAGAAACACCATGGAAACGAAACGTAACAGCGGCANCNCANCTCGTAGTNAAG]




>consensus_5329#3
ATCGCCCGAGGTTTTTTGTTTGTTTGTTAGCCATGTAGCAAAGAGAGTGAACCCATTCTC
CTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGGGCAAACACTACACTACATTTACTA
ACTCTAAACTACGATACGATACGAAAGGTGTAGAAGCAAAGTGTGTTTTTTGACTGATGA
AAATAGGTCGTGACAGAAGATATAGGTCGTTTGCTTGTAGCCACACACACGAACATCGTA
TTGGAACCATGATAGGAGGAAAAACAAAATGAAAACAAAGTGTGAGAGGTGATATACAAA
CATCTATGCCGTTTGCTTTGTAAGATTTCGCATTATTCATTTAGTCTTCTCCTTGTTCAT
TAATTCATTTAAAACATTACTATCCTCGTACCATAATTATAAGCACGTGGGGAGTAGAGC
AGAGCCCCAACGAGCAAACAATATGCGAACGAAGGAACAGGTTGGCTTGTGCTGCGTACC
TGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGTAGAAACACCATGGAAACGAAACGTAA
CAGCGGCANCNCANCTCGTAGTNAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5329#1      ------------------------------------------------------------
consensus_5329#3      ------------------------------------------------------------
consensus_5329#0      CTTTCTCTATCTTGTTATACACTTTCTGACCTTTGAACTTTCGTTCCACGTAAAGAAACA 60
consensus_5329#2      -------------------CCGCCCACGCGTCCGGAACTTTCGTTCCACGTAAAGAAACA 41
                                                                                  

consensus_5329#1      ------------------------------------------------------------
consensus_5329#3      ------------------------------------------------------------
consensus_5329#0      AAAAAAAAAAGTACAACACCGCTTACGCGTCCGTGCCGATTGAGTGTGTGATATTTCTCG 120
consensus_5329#2      AAAAA---AAGTACAACACCGCTTACGCGT----GCCTATTGAGTGTGTGATATTTCTCG 94
                                                                                  

consensus_5329#1      ------------GGCAGATCCGCACGAGGGTTTTTTTT-ATAAATAATAATAATATTTTA 47
consensus_5329#3      ------------------------------------------------------------
consensus_5329#0      TGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTTTATAAATAATAATAATATTTTA 180
consensus_5329#2      TGTATTATTTTGAGTGCGTGTGTGTGAGTGTTTTTTTT---AAATAATAGTAATATTTTA 151
                                                                                  

consensus_5329#1      ACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTT--GTT--TTTGTTAGCCATGTA 103
consensus_5329#3      --------------------ATCGCCCGAGGTTTTTTG--TTTG-TTTGTTAGCCATGTA 37
consensus_5329#0      ACTTTATTTCTTTGTTGCTTTTTATACACTACTTTTTT-GTTTGTTTTGTTAGCCATGTA 239
consensus_5329#2      CCTATATTTCTTTGTTGCTTTTTATACACTACTTTTTTTGTTTGTTTTGTTAGCCATGTA 211
                                           *    *     *****    **  ***************

consensus_5329#1      AGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 163
consensus_5329#3      -GCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 96
consensus_5329#0      AGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 299
consensus_5329#2      AGCAAAGAGAGTGAACCCATTCTCCTCTTCTGTTCTGTTGTTAGACGGGTGAGACTACGG 271
                       ***********************************************************

consensus_5329#1      GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 223
consensus_5329#3      GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 156
consensus_5329#0      GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 359
consensus_5329#2      GCAAACACTACACTACATTTACTAACTCTAAACTACGATACGATACGAAAGGTGTAGAAG 331
                      ************************************************************

consensus_5329#1      CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAA--GATATAGGTCGTTTGC 281
consensus_5329#3      CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAA--GATATAGGTCGTTTGC 214
consensus_5329#0      CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAA--GATATAGGTCGTTTGC 417
consensus_5329#2      CAAAGTGTGTTTTTTGACTGATGAAAATAGGTCGTGACAGAACAGATATAGGTCGTTTGT 391
                      ******************************************  *************** 

consensus_5329#1      TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 341
consensus_5329#3      TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 274
consensus_5329#0      TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 477
consensus_5329#2      TTGTAGCCACACACACGAACATCGTATTGGAACCATGATAGGAGGAAAAACAAAATGAAA 451
                      ************************************************************

consensus_5329#1      ACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 401
consensus_5329#3      ACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 334
consensus_5329#0      ACAAAGTGTGAGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 537
consensus_5329#2      ACAAAGTGTGCGAGGTGATATACAAACATCTATGCCGTTTGCTTTGTAAGATTTCGCATT 511
                      ********** *************************************************

consensus_5329#1      ATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCAT 461
consensus_5329#3      ATTCATTTAGTCTTCTCCTTGTTCATTAATTCATTTAAAACATTACTATCCTCGTACCAT 394
consensus_5329#0      ATTCATTTAGTCTTCTCCTTGGTCATTAATTCATTTAAAACATTACTATCCTCGTACCAT 597
consensus_5329#2      ATTCATTTAGTCTTCTCCTTGTTCATTGATTCATTTAAAACATTACTATCCTTGTACC-T 570
                      ********************* ***** ************************ ***** *

consensus_5329#1      AATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAA-AATATGCGAACGAAG 520
consensus_5329#3      AATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCAACGAGCAAACAATATGCGAACGAAG 454
consensus_5329#0      AATTATAAGCACGTGGGGAGTAGAGCAGAGCCCCCACGAGCNAA-AATATGCGAACGAAG 656
consensus_5329#2      AT---------------------------------------------------------- 572
                      *                                                           

consensus_5329#1      GAACAGGTTGGCTTGTGCTGCGTACCTG-TGAA-GCATT-TGCGCGCGGGTTCAGG-TGT 576
consensus_5329#3      GAACAGGTTGGCTTGTGCTGCGTACCTGCTGAACGCATTCNGCGCGCGGGTTCAGGCTGT 514
consensus_5329#0      GAACAGGTTGGCTTGTGCTG---------------------------------------- 676
consensus_5329#2      ------------------------------------------------------------
                                                                                  

consensus_5329#1      AGAAACACCATGGAAACGAAACGTAACAGTGGTAGTAGTGTCAGTAAGCAGACCAGCNAG 636
consensus_5329#3      AGAAACACCATGGAAACGAAACGTAACAGCGGCANCNCANCTCGTAGTNAAG-------- 566
consensus_5329#0      ------------------------------------------------------------
consensus_5329#2      ------------------------------------------------------------
                                                                                  

consensus_5329#1      CAAATCGT 644
consensus_5329#3      --------
consensus_5329#0      --------
consensus_5329#2      --------