These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 912 fasta sequence [GACTGTGATATGTCATCGCGNGGAGTACNACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAATTACAATCGTTATTAAATGATGGATGTAAATTCGCAAGTTCAACACACATAAACACACCCGTAAATTCACCCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAATCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCGCTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACATTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCATACAAAAACACACACACATTCATTCAGGCTATTCGG-AACACTTCACTACCAAGAGAGCGTAAGCATTTACGCTT-AAANGGGTGCATCAGTTCTTATCCCAGCAAAAAAAAAATGGAAGAAAATTGAAAAAAAGTAACCATTCAGTGAAAGGAAGAAAATACAGA] [+] EMBL BX622610 [GACTGTGATATGTCATCGCGNGGAGTACNACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAATTACAATCGTTATTAAATGATGGATGTAAATTCGCAAGTTCAACACACATAAACACACCCGTAAATTCACCCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAATCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCGCTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACATTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCATACAAAAACACACACACATTCATTCAGGCTATTCGG AACACTTCACTACCAAGAGAGCGTAAGCATTTACGCTT AAANGGGTGC ] [+] EMBL BX617400 [ GGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAATTACAATCGTTATTAAATGATGGATGTAAATTCGCAAGTTCAACACACATAAACACACCCGTAAATTCACCCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAATCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCGCTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACATTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCATACAAAAACACACACACATTCATTCAGGCTATTCGGAAACACTTCACTACCAAGAGAGCGTAAGCATTTACGCTTAAAAGGGGTGCATCAGTTCTTATCCCAGCAAAAAAAAAATGGAAGAAAATTGAAAAAAAGTAACCATTCAGTGAAAGGAAGAAAATACAGA] consensusID : consensus_5330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGAT] [+] EMBL BX608864 [CCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACCACCAAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATAGTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGAT] consensusID : consensus_5330#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [AATCGCCACGAGGCACACTAGTAGTTCGGGGGTGGTTTTGCGGAGACCCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGCAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTNTAAACTTACAAATCGTATTAAAGTGATGGATGTAAACNTTCGCAAGTTCAACACACATAAAACACCACCCGTAAATTCACCCAACAAAGAACCAGACGCATAACAGAA] [+] EMBL AL931141 [AATCGCCACGAGGCACACTAGTAGTTCGGGGGTGGTTTTGCGGAGACCCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGACGAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTTGGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAACCGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTAACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGTAAATGGCAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACAAGCGTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTNTAAACTTACAAATCGTATTAAAGTGATGGATGTAAACNTTCGCAAGTTCAACACACATAAAACACCACCCGTAAATTCACCCAACAAAGAACCAGACGCATAACAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5330#1 CCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACCATCATTGCTCGGACCTGTGCT 60 consensus_5330#2 --------------AATCGCCACGAGGCAC--ACTAGTAGTTCGGGGGTGGTTTTGCGG- 43 consensus_5330#0 ------------------------------------------------------------ consensus_5330#1 TCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGATGGTGATTGTAAATTAT 120 consensus_5330#2 --AGACCCCCCCGATTAGTTAAGCGAAGCGGAGTGTGGACGAACC----------ATCAT 91 consensus_5330#0 ------------------------------------------------------------ consensus_5330#1 TGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGAT 180 consensus_5330#2 TGCTCGGACCTGTGCTTCAACTTCGCGCGCCGAAACGAGCGAGCCGGGCTGCGAGCAGAT 151 consensus_5330#0 ------------------------------------------------------------ consensus_5330#1 GGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGAC 240 consensus_5330#2 GGTGATTGTAAATTATTGCAAACCTTGTAATTATTACCTTATCGTAATGCAGTTTAAGAC 211 consensus_5330#0 ------------------------------------------------------------ consensus_5330#1 GAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTT 300 consensus_5330#2 GAGAAAATGTGAAAATCTTGGGAAGAAAAGCGATAAGCGAGCGGTGTACAACCCGTTGTT 271 consensus_5330#0 ---------------------GACTGTGATATGTCATCGCGNGGAGTACNACCCGTTGTT 39 ** * * * ** * ** **** ********** consensus_5330#1 GGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAAC 360 consensus_5330#2 GGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAAC 331 consensus_5330#0 GGAAAGATGAAACATCCGGCACTTGAAGCTGAGTGGCAAACCAGAAAATCCCCTTTCAAC 99 ************************************************************ consensus_5330#1 CGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTA 420 consensus_5330#2 CGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTA 391 consensus_5330#0 CGGTTATAGTTCAGCCAAAACAGAGGACAAAAAAGCTTCATTTAGCATGAATTTAATGTA 159 ************************************************************ consensus_5330#1 ACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGT 480 consensus_5330#2 ACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGT 451 consensus_5330#0 ACAGAAAGACACAACCAAACCAGGAAAGAGGAAGAAACATGATGCTCAATCAGAATCAGT 219 ************************************************************ consensus_5330#1 AAATGG-AGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACCACCAAGACCCAGC 539 consensus_5330#2 AAATGGCAGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACA-AGC 510 consensus_5330#0 AAATGG-AGGAGAGGATGAGATGTTTTGCATTCATTAAAGAGTCACACCCAATACA-AGC 277 ****** *************************************** **** ** *** consensus_5330#1 GCATA---ACAGAAATATGA----ACAGTCAAACAGTCAAATAGTCACAGACGTACCGAG 592 consensus_5330#2 GTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTNTAAACTTACAAAT 570 consensus_5330#0 GTACACGAATGGAGCGGTCATATTAGAGAGAAGGGGCTATCCGTGTTTAAAT-TAC-AAT 335 * * * * ** * * * ** ** * * * * *** * consensus_5330#1 TGCAGGCAA--GAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTTCAAAT------TGTT 644 consensus_5330#2 CGTATTAAAGTGATGGATGTAAACNTTCGCAAGTTCAACACACATAAAACACCACCCGTA 630 consensus_5330#0 CGTTATTAAATGATGGATGTAAA--TTCGCAAGTTCAACACACATAAACA--CACCCGTA 391 * ** ** ** * *** * * * * * ** ** consensus_5330#1 TCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGAT------------------------- 679 consensus_5330#2 AATTCACCCAACAAAGAACCAGACGCATAACAGAA------------------------- 665 consensus_5330#0 AATTCACCCACC--AAGACCCAGCGCATAACAGAAATATGAACAGTCAAACAGTCAAATA 449 ** ** * *** ** ** consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 GTCACAGACGTACCGAGTGCAGGCAAGAAGGCGGAAAAGTTAATGGAAAAGAGCTTCTTT 509 consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 CAAATTGTTTCTTTCCCAGTTGCAAAACCCGTTTTATGCTCGATAGCATATTGATCCGAA 569 consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 TCTGACCGAGCCAATACTCCCCATCATTACCATCACCACCACCACCACCACCATCGTTCG 629 consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 CTGTCTGTGAATATACGTTTTAATGTTACAGTGGATTTAAACGACTAGCGTGGATGAACA 689 consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 TTACTACAAGAGAGTTACAAAACTTCATGACAGTTGCGAAAAGTATTGCGATCGTGGCAT 749 consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 ACAAAAACACACACACATTCATTCAGGCTATTCGGAACACTTCACTACCAAGAGAGCGTA 809 consensus_5330#1 ------------------------------------------------------------ consensus_5330#2 ------------------------------------------------------------ consensus_5330#0 AGCATTTACGCTTAAANGGGTGCATCAGTTCTTATCCCAGCAAAAAAAAAATGGAAGAAA 869 consensus_5330#1 ------------------------------------------- consensus_5330#2 ------------------------------------------- consensus_5330#0 ATTGAAAAAAAGTAACCATTCAGTGAAAGGAAGAAAATACAGA 912 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||