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Anopheles gambiae
cluster # 5339 cluster # 5339       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5339#0 length = 886 sequences # 2  
consensus_5339#1 length = 671 sequences # 2  

consensusID : consensus_5339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 886
fasta sequence
                              [ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCTGTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT]

[+] EMBL AL931373             [ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCTGTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGGAATATGGCGTATATGTATCTATG                                                                                                                                               ]
[+] EMBL BX611476             [                                                                                                                                                                               GCCC GACC GAATGC GGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTG TTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAA GATGGC GGCCAGTCCAGATCA GGCTAACTGCTAATGGGCAC GCGTGCTCTGACGGAAG GC GGTG GCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAG GCTTGTGCAATACTTTTATCTTTCTTGTT   TTTTTTTTTTTCATCCTTTAATGAATTTAAC GTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCG TTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCG TG AAGCGTGAACATGTACATACGGTTACGAT AAGA GGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT]


>consensus_5339#0 ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACG TGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCT GTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCT GACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAA GCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTA ATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGAT GGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTG CTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATAC TTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGT TTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTC CTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTC GGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGG AATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTAC TTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTT ATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT



consensusID : consensus_5339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence
                              [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTACATAGAATAGA]

[+] EMBL BM636828             [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTACATAGAATAGA]
[+] EMBL BM636843             [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATT                    ]


>consensus_5339#1 CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTT CGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTT CAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCC GCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCT GGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGA GCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGA GTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGT GCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCT ACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGA CCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGC AAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTA CATAGAATAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5339#0      ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACG 60
consensus_5339#1      ------------------------------------------------------------
                                                                                  

consensus_5339#0      TGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTG--GTG 118
consensus_5339#1      --------------------------CCGGAA--CAACCACGGTAAGATGTCGCGCGGTG 32
                                                 *****  ** *  * ** ** ** *  *  ***

consensus_5339#0      CTGTCT-TACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGC 177
consensus_5339#1      TCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGC-ATCACGAACGGGGCCGCCTGG 91
                        * **  *  ** *     *   *   * *  **  * **  * ***  *   ***** 

consensus_5339#0      CCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGC 237
consensus_5339#1      TACCCGCTGACCGGCGGCATGC-AGGACT---TCAACTACGTCTGGCACG-GCTGCATG- 145
                            ****  *  ****  * ****     ***  *    **     * ** *** * 

consensus_5339#0      GAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTC-TCCGCTTACCATCCTCCGCCAA 296
consensus_5339#1      GAGGTGA--CGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGC-TGCGCAAG 202
                      ** * **   * *   *         *  ****** *  **** *** * * * *** * 

consensus_5339#0      TCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAA 356
consensus_5339#1      TACTGGG-ACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGT 261
                      *       * *  *  *  ***  *    * * *     *** *     *  ***  *  

consensus_5339#0      TGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGA 416
consensus_5339#1      CCAGGGCT--TCATCATGGACC----CGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAA 315
                        * ****   **     ** *    * * * ** *   **    *** ** * *    *

consensus_5339#0      AGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCA 476
consensus_5339#1      GATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGC----GAGTTCTGGCGCA 371
                        *    * * ** ** *   *  * *  * *    * *         *** ** * ***

consensus_5339#0      ATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTA-ACTGTCT 535
consensus_5339#1      -TCCTGCTGCCCGGCGTCTACAAGCTGGAGGT---GTACGCGGACGGGTTCGTGCCGAAG 427
                       * **  *  *   * * * *   **     *    * *    * *  **    * *   

consensus_5339#0      GGTGTTTTCTTCACTTTC--CACTTACTGGTTAAATCTGCGACAC-TAAAACCACACTCG 592
consensus_5339#1      GATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCG 487
                      * ***   *****   **  *    *       *  ****   ** * *  * ***  **

consensus_5339#0      TTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTG 652
consensus_5339#1      GCCAAGGAA-GCCGCGGAATACAGCGCCAGTCAGCTGCCC---GGTGCGTCTTACGACCG 543
                                *  *  *  * **  **   *** * *  *    *      *  ***  *

consensus_5339#0      ATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGAT 712
consensus_5339#1      GCCGC-TAACGCCAACCACACCCATTGC--CAACCGTGAGCCTGCCCGACCGAATGCGG- 599
                        **  *   * ** *    *   * *   *** ***** * **  *   **  * **  

consensus_5339#0      CAAGACGGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACT 772
consensus_5339#1      CAAACCAGGAT-CGGCTCATTTTTACCTCCTGAG----CGCAGCACG-CGAAGCGATTTG 653
                      ***  * * **  ***  ** * ** **   ***      * * * * *  * *      

consensus_5339#0      TTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGC 832
consensus_5339#1      TTTTGTACATAGAATAGA------------------------------------------ 671
                      ** * *** *   *** *                                          

consensus_5339#0      TTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT 886
consensus_5339#1      ------------------------------------------------------
                                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)