These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence [ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCTGTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT] [+] EMBL AL931373 [ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTGGTGCTGTCTTACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGCCCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAATGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGAAGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCAATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTAACTGTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCGTTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGATCAAGACGGAATATGGCGTATATGTATCTATG ] [+] EMBL BX611476 [ GCCC GACC GAATGC GGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTG TTTTGTACATAGAATAGAAGTTTTCTCCGCTTACCATCCTCCGCCAATCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAA GATGGC GGCCAGTCCAGATCA GGCTAACTGCTAATGGGCAC GCGTGCTCTGACGGAAG GC GGTG GCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAG GCTTGTGCAATACTTTTATCTTTCTTGTT TTTTTTTTTTTCATCCTTTAATGAATTTAAC GTCTGGTGTTTTCTTCACTTTCCACTTACTGGTTAAATCTGCGACACTAAAACCACACTCG TTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTGATCGTGTCGGGACAGCTCGTCGTGTCG TG AAGCGTGAACATGTACATACGGTTACGAT AAGA GGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACTTTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGCTTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT] consensusID : consensus_5339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTACATAGAATAGA] [+] EMBL BM636828 [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATTTGTTTTGTACATAGAATAGA] [+] EMBL BM636843 [CCGGAACAACCACGGTAAGATGTCGCGCGGTGTCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGCATCACGAACGGGGCCGCCTGGTACCCGCTGACCGGCGGCATGCAGGACTTCAACTACGTCTGGCACGGCTGCATGGAGGTGACGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGCTGCGCAAGTACTGGGACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGTCCAGGGCTTCATCATGGACCCGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAAGATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGCGAGTTCTGGCGCATCCTGCTGCCCGGCGTCTACAAGCTGGAGGTGTACGCGGACGGGTTCGTGCCGAAGGATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCGGCCAAGGAAGCCGCGGAATACAGCGCCAGTCAGCTGCCCGGTGCGTCTTACGACCGGCCGCTAACGCCAACCACACCCATTGCCAACCGTGAGCCTGCCCGACCGAATGCGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGCGAAGCGATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5339#0 ATGCAAGAATNGCCCGAGGNGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACG 60 consensus_5339#1 ------------------------------------------------------------ consensus_5339#0 TGACGCTACAGCCGGCAANGAAGCCTGCGGAATACAGCGCCAGTCAGCTGCCCTG--GTG 118 consensus_5339#1 --------------------------CCGGAA--CAACCACGGTAAGATGTCGCGCGGTG 32 ***** ** * * ** ** ** * * *** consensus_5339#0 CTGTCT-TACGACCGGCCTGCTAACTGCCAACCACACCCATTGCCAACCTGTGAGCCTGC 177 consensus_5339#1 TCGCCTGCAAAACTGCGTCACCCTCGTTCGAGAACGGC-ATCACGAACGGGGCCGCCTGG 91 * ** * ** * * * * * ** * ** * *** * ***** consensus_5339#0 CCTGACCTGAATGCTGGCAAACCAGGATCGGCTCATTTTTACCTCCTGAGCGCAGCACGC 237 consensus_5339#1 TACCCGCTGACCGGCGGCATGC-AGGACT---TCAACTACGTCTGGCACG-GCTGCATG- 145 **** * **** * **** *** * ** * ** *** * consensus_5339#0 GAAGCGATTTGTTTTTGTACATAGAATAGAAGTTTTC-TCCGCTTACCATCCTCCGCCAA 296 consensus_5339#1 GAGGTGA--CGCTCGAGGTGTCCTGCTGCAAGTTTCCGCCCGCGTACGAGC-TGCGCAAG 202 ** * ** * * * * ****** * **** *** * * * *** * consensus_5339#0 TCTAATCTAAGTTAGTCGTATGGAGGCAGTTACGCAAAAGGCAGTCAAACGACGGTTCAA 356 consensus_5339#1 TACTGGG-ACGACAACCAGATGTCGATGATCAAGTTCCTGGCGGAGGCGCACCGGGGCGT 261 * * * * * *** * * * * *** * * *** * consensus_5339#0 TGATGGCTGGCCAGTCCAGATCATGGCTAACTGCTAATGGGCACTGCGTGCTCTGACGGA 416 consensus_5339#1 CCAGGGCT--TCATCATGGACC----CGACCGGCAATCCGGTCGAGCGGGCGCAGCTCAA 315 * **** ** ** * * * * ** * ** *** ** * * * consensus_5339#0 AGTGCTNGTGTGCTACTTAAACCCCTCACCGATTGGGGATAAGTGTGAAGTGCTTGTGCA 476 consensus_5339#1 GATTAAGGGGCGCGACATCGGCTTCACCACCACCAAGTACGGC----GAGTTCTGGCGCA 371 * * * ** ** * * * * * * * * *** ** * *** consensus_5339#0 ATACTTTTATCTTTCTTGTTCTCTCTCTTTTTTTCATCCTTTAATGAATTTA-ACTGTCT 535 consensus_5339#1 -TCCTGCTGCCCGGCGTCTACAAGCTGGAGGT---GTACGCGGACGGGTTCGTGCCGAAG 427 * ** * * * * * * ** * * * * * ** * * consensus_5339#0 GGTGTTTTCTTCACTTTC--CACTTACTGGTTAAATCTGCGACAC-TAAAACCACACTCG 592 consensus_5339#1 GATGTGGACTTCATGATCGTCGAGCAGCATCCGACGCTGCTGAACGTGACGCTACAGCCG 487 * *** ***** ** * * * **** ** * * * *** ** consensus_5339#0 TTTTGTTCCTGTTGAAGTTTGCAAAGCTGCTCAACGGTTCTTCAGCCAACGTGGCGAGTG 652 consensus_5339#1 GCCAAGGAA-GCCGCGGAATACAGCGCCAGTCAGCTGCCC---GGTGCGTCTTACGACCG 543 * * * * ** ** *** * * * * * *** * consensus_5339#0 ATCGTGTCGGGACAGCTCGTCGTGTCGTTGCAAGCGTGAACATGTACATACGGTTACGAT 712 consensus_5339#1 GCCGC-TAACGCCAACCACACCCATTGC--CAACCGTGAGCCTGCCCGACCGAATGCGG- 599 ** * * ** * * * * *** ***** * ** * ** * ** consensus_5339#0 CAAGACGGAATATGGCGTATATGTATCTATGGAGGTGTTCCGGGATGACCTAACCGCACT 772 consensus_5339#1 CAAACCAGGAT-CGGCTCATTTTTACCTCCTGAG----CGCAGCACG-CGAAGCGATTTG 653 *** * * ** *** ** * ** ** *** * * * * * * * consensus_5339#0 TTCTCTACTTCCCATAAACTGTTCAACACTTCGGAGAGGGTTTTTGGTTTGTTTGTTTGC 832 consensus_5339#1 TTTTGTACATAGAATAGA------------------------------------------ 671 ** * *** * *** * consensus_5339#0 TTTTTTTTATAGAACTAATAGGAGTGTTGTTGTTCGTTGCTCCTCGCATCATAT 886 consensus_5339#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||