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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence
[CAAGAATCGGCACGAGGACAGTTTGGACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCTGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGAGGCTGCCCGGTTGCTGCCGTTGCCCCCGAAGGGAGACCGTCGTCGTTGCCCAGGCCCGCGGTTTGCTGCCGTCGTTGCCAGAAGGAAGCTCGCGTATGTCGCTGCTAAACCCCCGGTTGCCCGTGCCAACCGAAAAGGCTTCCCGGTTTTGGCACCGGGACACAACAACCCCGTTCAAACCNAACAATTCGGCTTGAAACCGTTTCAAGCCTTTNCCCCGGGAAAACCCAATTAAAGACAGTTTTTCAACCCGGTGNACCTATTTGAAAA]
[+] EMBL BX467588 [CAAGAATCGGCACGAGGACAGTTTGGACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCTGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGAGGCTGCCCGGTTGCTGCCGTTGCCCCCGAAGGGAGACCGTCGTCGTTGCCCAGGCCCGCGGTTTGCTGCCGTCGTTGCCAGAAGGAAGCTCGCGTATGTCGCTGCTAAACCCCCGGTTGCCCGTGCCAACCGAAAAGGCTTCCCGGTTTTGGCACCGGGACACAACAACCCCGTTCAAACCNAACAATTCGGCTTGAAACCGTTTCAAGCCTTTNCCCCGGGAAAACCCAATTAAAGACAGTTTTTCAACCCGGTGNACCTATTTGAAAA]
consensusID : consensus_5341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence
[ACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCGGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCCGGTTGCTGCCGTTGCCCCCGAGGAGACCGTCGTCGTTGCCCAGCCCGCGGTTGCTGCCGTCGTTGCCCAGAAGGAAGCTCGCTATGTCGCTGCTAACCCCGGTGCCGTGCACGAAGCTCCGCTTGCCGGACACACCGTCAACCAGCAGTCGCTGAACGTGCAG]
[+] EMBL BX625061 [ACGGCAGCATCCACAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTGCCCTTCGCACTCCGGTAGTTTACACCGGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTTGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTCGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCCGGTTGCTGCCGTTGCCCCCGAGGAGACCGTCGTCGTTGCCCAGCCCGCGGTTGCTGCCGTCGTTGCCCAGAAGGAAGCTCGCTATGTCGCTGCTAACCCCGGTGCCGTGCACGAAGCTCCGCTTGCCG ]
[+] EMBL BX626740 [ GCATCCAGAAAACAAGCCCAGCAATCATGAAGTGCATCGCAGCTGTAGTCATGATGACTCTGGCCATCGCGGCGGAGGCTAACGTTATTACCCTTCGCACTCCGGTAGTTTACACCGGTGCCGAGAAAACAGTCGTCCAGCAGAACGTAGCTCCGAAATACTACACGTCCAGCGTGGCTTACAATGCCCCCGTAGTGACCGCGTACACCGTCCCAGAAACTTACGTCCAACAGAAGTACTATTCGGGCCCGGCTGTGACATACGCTGCTGCGCCTGCCGTCACCACCTACTCCGTCCCGAAGGCGACCTACGTGGCGTCGAACGTTGCCCCGGCTGTCGCCTACTCGACCCCAGTCGTCACTGCCTACACGGTGCCGGAAAAGACCGTTGTGCAGCAGAACGTTGCCCCGAAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGGCTGTCTCCTACTCCGCTCCGGCCGTCACCTACACCGCCACCGCTCCGGTGACCAAGTATGAATCGGTCGCACCCGTTGCTTACCCGGCACCGATCGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCCGGTTGCTGCCGTTGCCCCCGANGAGACCGTCGTTGTTGCCCAGCCCGCGGTTGCTGCCGTCGTTGCCCAGAANGAAGCTCGCTATGTCGCTGCTAANCCCGGTGNCGTGCACGAAGCTCCGCTTGCCGGACACACCGTCAACCAGCAGTCGCTGAACGTGCAG]
consensusID : consensus_5341#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence
[CTCGCCCGANGTANCNGTTTGGACGGCAGCATCCACAAAACATGCCAGCAATCATGAAAGTGCATCTGCAGCTGTAGTCATGATGACTCTGGCCATCTGCGGTGGAGGCTAACGTTTATTTGGCCTTTTCGCACTCCGGTAGTTTACACCTGTGTGCCTGAGAAAACAGTCTGTCCAGCAGAACGTAGCTCCGAAATACTACACTGTTCAGCGTGGCTTACAATTGCCCCCGTAGTGACCGCTGTACACCGTCCCAGAAACTTACGTCCAAACAGAAGTACTATTCGGGCCCTGGCTTGTGACATTACGCTTGCTTGCAGCCTGCNCTGTCACACTACTTGCGTCCCGAAGTGCCGACCTACTGTTGGCGTCGAACGTTTGCGCCCGGCTGTCCGCCTAACTCGAACCCAGTTTGTCACTTGCCTACACGGTNGCCTGGAAAAGACCGNNTGTTGCAGCAGAACTGTTGNCCCTGAAGTACGTTAGCTACACGGCCCTGTGCGTGTCTTACGTTGCTCCTGTGCTGTCTCCTACTCCGNNTCCGGCTGTCACCTACACCTGCACCTGCTCCTGGTGACCAAGTATTGAATCNGGTCTGCACCCTGTCGCTTACCCTGGCACCGATCTGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCTGGTTGCTGCCGTTGCCCCCGAGGAGACCTGTCTGTCGTTGCCCAGCCTGCTGGTTGCTGCCTGTCGTTGCCCATGA]
[+] EMBL AL931440 [CTCGCCCGANGTANCNGTTTGGACGGCAGCATCCACAAAACATGCCAGCAATCATGAAAGTGCATCTGCAGCTGTAGTCATGATGACTCTGGCCATCTGCGGTGGAGGCTAACGTTTATTTGGCCTTTTCGCACTCCGGTAGTTTACACCTGTGTGCCTGAGAAAACAGTCTGTCCAGCAGAACGTAGCTCCGAAATACTACACTGTTCAGCGTGGCTTACAATTGCCCCCGTAGTGACCGCTGTACACCGTCCCAGAAACTTACGTCCAAACAGAAGTACTATTCGGGCCCTGGCTTGTGACATTACGCTTGCTTGCAGCCTGCNCTGTCACACTACTTGCGTCCCGAAGTGCCGACCTACTGTTGGCGTCGAACGTTTGCGCCCGGCTGTCCGCCTAACTCGAACCCAGTTTGTCACTTGCCTACACGGTNGCCTGGAAAAGACCGNNTGTTGCAGCAGAACTGTTGNCCCTGAAGTACGTTAGCTACACGGCCCTGTGCGTGTCTTACGTTGCTCCTGTGCTGTCTCCTACTCCGNNTCCGGCTGTCACCTACACCTGCACCTGCTCCTGGTGACCAAGTATTGAATCNGGTCTGCACCCTGTCGCTTACCCTGGCACCGATCTGCTTACTCATCCGACTCGGACGTAGTGGAGGCTGCCCTGGTTGCTGCCGTTGCCCCCGAGGAGACCTGTCTGTCGTTGCCCAGCCTGCTGGTTGCTGCCTGTCGTTGCCCATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5341#0 CAAGAATCGGCACGAGGACAGTTTGGACGGCAGCATCCACAAAACAAGCCCAGCAATCAT 60
consensus_5341#1 --------------------------ACGGCAGCATCCACAAAACAAGCCCAGCAATCAT 34
consensus_5341#2 ----CTCGCCCGANGTANCNGTTTGGACGGCAGCATCCACAAAACATGCC-AGCAATCAT 55
******************** *** *********
consensus_5341#0 GAA-GTGCATC-GCAGCTGTAGTCATGATGACTCTGGCCATC-GCGGCGGAGGCTAACGT 117
consensus_5341#1 GAA-GTGCATC-GCAGCTGTAGTCATGATGACTCTGGCCATC-GCGGCGGAGGCTAACGT 91
consensus_5341#2 GAAAGTGCATCTGCAGCTGTAGTCATGATGACTCTGGCCATCTGCGGTGGAGGCTAACGT 115
*** ******* ****************************** **** ************
consensus_5341#0 TA--TTGCCCTT--CGCACTCCGGTAGTTTACACCTGTG---CCGAGAAAACAGTC-GTC 169
consensus_5341#1 TA--TTGCCCTT--CGCACTCCGGTAGTTTACACCGGTG---CCGAGAAAACAGTC-GTC 143
consensus_5341#2 TTATTTGGCCTTTTCGCACTCCGGTAGTTTACACCTGTGTGCCTGAGAAAACAGTCTGTC 175
* *** **** ********************* *** * ************ ***
consensus_5341#0 CAGCAGAACGTAGCTCCGAAATACTACAC-GTCCAGCGTGGCTTACAAT-GCCCCCGTAG 227
consensus_5341#1 CAGCAGAACGTAGCTCCGAAATACTACAC-GTCCAGCGTGGCTTACAAT-GCCCCCGTAG 201
consensus_5341#2 CAGCAGAACGTAGCTCCGAAATACTACACTGTTCAGCGTGGCTTACAATTGCCCCCGTAG 235
***************************** ** **************** **********
consensus_5341#0 TGACCGC-GTACACCGTCCCAGAAACTTACGTCCAA-CAGAAGTACTATTCGGGCCCGG- 284
consensus_5341#1 TGACCGC-GTACACCGTCCCAGAAACTTACGTCCAA-CAGAAGTACTATTCGGGCCCGG- 258
consensus_5341#2 TGACCGCTGTACACCGTCCCAGAAACTTACGTCCAAACAGAAGTACTATTCGGGCCCTGG 295
******* **************************** ******************** *
consensus_5341#0 -CTGTGACAT-ACGCTG--CTGCGCCTGCCGTCACCAC-CTACTC-CGTCCCGAAGG--C 336
consensus_5341#1 -CTGTGACAT-ACGCTG--CTGCGCCTGCCGTCACCAC-CTACTC-CGTCCCGAAGG--C 310
consensus_5341#2 CTTGTGACATTACGCTTGCTTGCAGCCTGCNCTGTCACACTACTTGCGTCCCGAAGTGCC 355
******** ***** *** * * *** ***** ********** *
consensus_5341#0 GACCTACG--TGGCGTCGAACGTT-GC-CCCGGCTGTC-GCCTA-CTCGACCCCAGTT-G 389
consensus_5341#1 GACCTACG--TGGCGTCGAACGTT-GC-CCCGGCTGTC-GCCTA-CTCGACCCCAGTT-G 363
consensus_5341#2 GACCTACTGTTGGCGTCGAACGTTTGCGCCCGGCTGTCCGCCTAACTCGAACCCAGTTTG 415
******* ************** ** ********** ***** ***** ******* *
consensus_5341#0 TCACT-GCCTACACGGTG--CCGGAAAAGACCGTTG--TGCAGCAGAAC-GTTGCCCC-G 442
consensus_5341#1 TCACT-GCCTACACGGTG--CCGGAAAAGACCGTTG--TGCAGCAGAAC-GTTGCCCC-G 416
consensus_5341#2 TCACTTGCCTACACGGTNGCCTGGAAAAGACCGNNTGTTGCAGCAGAACTGTTGNCCCTG 475
***** *********** * *********** *********** **** *** *
consensus_5341#0 AAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGG--CTGTCTCCTACT 500
consensus_5341#1 AAGTACGTTAGCTACACGGCCCCGGCCGTGTCTTACGTTGCTCCGG--CTGTCTCCTACT 474
consensus_5341#2 AAGTACGTTAGCTACACGGCCCTGTGCGTGTCTTACGTTGCTCCTGTGCTGTCTCCTACT 535
********************** * ****************** * ************
consensus_5341#0 CCGCT-CCGGCCGTCACCTACACCGCCACC-GCTCC-GGTGACCAAGTAT-GAATCGG-- 554
consensus_5341#1 CCGCT-CCGGCCGTCACCTACACCGCCACC-GCTCC-GGTGACCAAGTAT-GAATCGG-- 528
consensus_5341#2 CCGNNTCCGGCTGTCACCTACACCTGCACCTGCTCCTGGTGACCAAGTATTGAATCNGGT 595
*** ***** ************ **** ***** ************* ***** *
consensus_5341#0 TCGCACCC-GTCGCTTACCC-GGCACCGATC-GCTTACTCATCCGACTCGGACGTAGTG- 610
consensus_5341#1 TCGCACCC-GTCGCTTACCC-GGCACCGATC-GCTTACTCATCCGACTCGGACGTAGTGG 585
consensus_5341#2 CTGCACCCTGTCGCTTACCCTGGCACCGATCTGCTTACTCATCCGACTCGGACGTAGTGG 655
****** *********** ********** ***************************
consensus_5341#0 AGGCTGCCC-GGTTGCTGCCGTTGCCCCCGAAGGGAGACC-GTC-GTCGTTGCCCAGGCC 667
consensus_5341#1 AGGCTGCCCCGGTTGCTGCCGTTGCCCCCGA--GGAGACC-GTC-GTCGTTGCCCAG-CC 640
consensus_5341#2 AGGCTGCCCTGGTTGCTGCCGTTGCCCCCGA--GGAGACCTGTCTGTCGTTGCCCAG-CC 712
********* ********************* ******* *** ************ **
consensus_5341#0 CGCGGTTTGCTGCC-GTCGTTGCC-AGAAGGAAGCTCGCGTATGTCGCTGCTAAACCCCC 725
consensus_5341#1 CGCGGTT-GCTGCC-GTCGTTGCCCAGAAGGAAGCTCGC-TATGTCGCTGCTAA--CCCC 695
consensus_5341#2 TGCTGGTTGCTGCCTGTCGTTGCCCATGA------------------------------- 741
** * * ****** ********* * *
consensus_5341#0 GGTTGCCCGTGCCAACCGAAAAGGCTTCCCGGTTTTGGCACCGGGACACAACAACCCCGT 785
consensus_5341#1 GGTGCCGTGCACGAAGCTCC---GCTTGCCGGAC---ACACCGTCAACCAGCAGTC--GC 747
consensus_5341#2 ------------------------------------------------------------
consensus_5341#0 TCAAACCNAACAATTCGGCTTGAAACCGTTTCAAGCCTTTNCCCCGGGAAAACCCAATTA 845
consensus_5341#1 TGAA--CGTGCAG----------------------------------------------- 758
consensus_5341#2 ------------------------------------------------------------
consensus_5341#0 AAGACAGTTTTTCAACCCGGTGNACCTATTTGAAAA 881
consensus_5341#1 ------------------------------------
consensus_5341#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||