These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence [CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCACTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTTAAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGTGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGTTTCAGAGAGGAAACTAAAATAAATAAAAGTATGTAATAGATATTTTTATTTATGTGTAATGGAAGATGAAATTATGAAAAATAAAA] [+] EMBL BX616535 [CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCACTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTTAAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGTGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAG ] [+] EMBL BX608190 [ AAGCGTAATGACAACTGCTTCATCACTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTTAAAAGAGGACAAGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAACTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGTTTCAGAGAGGAAACTAAAATAAATAAAAGTATGTAATAGATATTTTTATTTATGTGTAATGGAAGATGAAATTATGAAAAATAAAA] consensusID : consensus_5344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTTTAAGGGGGGGGGGCATTAATAGCAAAGTAGCACGACAGAGGTTTTAATAAAACTTTACCAACATTTTCCACTNTCCGCTCTGAGTCCCTTTTAATTGCTGCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGATTC] [-] EMBL AL931547 [TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTTTAAGGGGGGGGGGCATTAATAGCAAAGTAGCACGACAGAGGTTTTAATAAAACTTTACCAACATTTTCCACTNTCCGCTCTGAGTCCCTTTTAATTGCTGCATTCAAACATGCGTTGAGGAGCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCAACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCAGCAATGCGCTACTAAACCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAGTTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCAAGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCAGTTTGAGCTTTCATCAGTGATGAGACCGTTCGGTGGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCTCCGGCAGTTGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGATTC] consensusID : consensus_5344#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CGAGGCAAGAATCGGCACGNAGGTGCATACAACATAACTCACCATGATGTTTTGCAAACCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCACTATCTGAGTTATNTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCCCTTAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTCTGTGAACAATCAGTTGTTAATAAAACTTTACCAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTGTGCACAGGGACAGCAACATGGCCAAGAATCAATCAACTTAAGAATCGANAAGCCAAATCGTAAACAATTCAGCGCAGATTCAGNAACTGCGCTACTAAAACNNAGTGGCTAAACCAATGGCGTTGAATGTTA] [+] EMBL BX467200 [CGAGGCAAGAATCGGCACGNAGGTGCATACAACATAACTCACCATGATGTTTTGCAAACCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTCAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCACTATCTGAGTTATNTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCCCTTAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTCTGTGAACAATCAGTTGTTAATAAAACTTTACCAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCAAACATGCGTTGAGGAGCATTTGTGCACAGGGACAGCAACATGGCCAAGAATCAATCAACTTAAGAATCGANAAGCCAAATCGTAAACAATTCAGCGCAGATTCAGNAACTGCGCTACTAAAACNNAGTGGCTAAACCAATGGCGTTGAATGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5344#0 CCAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACT 60 consensus_5344#1 ------------------------------------------------------------ consensus_5344#2 ------------------------------------------------------------ consensus_5344#0 CAAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCCTCA 120 consensus_5344#1 ------------------------------------------------------------ consensus_5344#2 ------------------------------------------------------------ consensus_5344#0 CTATCTGAGTTTTTGTTAAAACCTCTGTCGTGCTACTTTGCTTTAATGCCCCCCCCCCTT 180 consensus_5344#1 ------------------------TTGCGCCGCAACATTGCCTGTTTTCTTGTCCTCTTT 36 consensus_5344#2 ------------------------------------------------------------ consensus_5344#0 AAAAGAGGACA--AGAAAACCAGTTAAAATGAACACTCTGTAACAATAGTTGTAATAAAA 238 consensus_5344#1 TAAGGGGGGGG--GGCA------TTAATAGCAAAGTAGCACGACAGAGGTTTTAATAAAA 88 consensus_5344#2 CGAGGCAAGAATCGGCACGNAGGTGCATA-CAACATAACTCACCATGATGTTTTGCAAAC 59 * * * * * * * ** ** * * *** consensus_5344#0 CTTTACCAACATTTTCCACTCTCCGCTCTGAGCCCA----AAATTC---T-CATTCAAAC 290 consensus_5344#1 CTTTACCAACATTTTCCACTNTCCGCTCTGAGTCCCTTTTAATTGC---TGCATTCAAAC 145 consensus_5344#2 CAATAATAAAACACAATAACGTCCGGTACGAAATTTGAATAAACGTCAGTGCATCCACTC 119 * ** ** * * **** * ** ** * *** ** * consensus_5344#0 ATGCGTTGAGGA-------GCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCA- 342 consensus_5344#1 ATGCGTTGAGGA-------GCATTTTGCACAGCACAGCAACGTGGCAAAGAATCAATCA- 197 consensus_5344#2 AAGAACTGATAAAACATTAGCAATTTAATTTGCTAAGCGTAATGACAACTGCTTCATCAC 179 * * *** * *** *** ** *** ** *** * **** consensus_5344#0 -ACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATT-CAGCAATGCGCTACTAAA 400 consensus_5344#1 -ACTTAAAATCGACAACCAAACGTAAAAAATCAGCGAGATNTCAGCAATGCGCTACTAAA 256 consensus_5344#2 TATCTGAGTTATNTGTTAAAACCTCTGTCGT--GCTACTTTGCTTTAATGCCCCCCC--- 234 * * * * **** * * ** * * * ***** * * consensus_5344#0 CCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAG 460 consensus_5344#1 CCAATGCTAAACAATGCGATTAATTTAATCACACCATTTGATAACGGAAACGCTCAGTAG 316 consensus_5344#2 CCCCCTTAAAAGAGGACNAGAAACCCAGTTAAAATGAACACTC-TGTGAACAATCAGTTG 293 ** *** * * * ** * * * * * * *** ***** * consensus_5344#0 TTGTGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCA 520 consensus_5344#1 TTGCGGCAGCGACGGGCAGCGTCGTTTAAAGTAAAAGGGACGAGCACATGTAGTGTAGCA 376 consensus_5344#2 TTAATAAAACTTTAC-CAACATTTTNCACTCTCCGGTCTGAGGCCCAAAATTCTCATTCA 352 ** * * ** * * * * * * * * * * ** consensus_5344#0 AGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCA-GTTTGAGCTTTCATCAGT 579 consensus_5344#1 AGCAGCAAATTGAGAGTGTCCAGTGAAAGAAACGTGCAGCA-GTTTGAGCTTTCATCAGT 435 consensus_5344#2 AACATGCGTTGAGGAGCATTTGTGCACAGGGACA-GCAACATGGCCAAGAATCAATCAAC 411 * ** * *** * * ** ** *** ** * ** * **** consensus_5344#0 GATGAGACCGTTCGGT-GGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCT 638 consensus_5344#1 GATGAGACCGTTCGGT-GGGTGGTAGTAATGTGGGATGATGGCTGCGCATTGATGCTGCT 494 consensus_5344#2 TTAAGAATCGANAAGCCAAATCGTAA-ACAATTCAGCGCAGATTCAGNAACTGCGCTACT 470 * ** * * *** * * * * * * * *** ** consensus_5344#0 CCGGCAGT-TGAAAGATTCAATTGTTTTGCGCGCGCGCGCTGCTGAACATGGAAAACAGT 697 consensus_5344#1 CCGGCAGT-TGAAAGATTCAATTGTTTTGCGCGCGNACCTCGGGCGATTC---------- 543 consensus_5344#2 AAAACNNAGTGGCTAAACCAATGGCGTTGAATGTTA------------------------ 506 * ** * **** * *** * consensus_5344#0 TTCAGAGAGGAAACTAAAATAAATAAAAGTATGTAATAGATATTTTTATTTATGTGTAAT 757 consensus_5344#1 ------------------------------------------------------------ consensus_5344#2 ------------------------------------------------------------ consensus_5344#0 GGAAGATGAAATTATGAAAAATAAAA 783 consensus_5344#1 -------------------------- consensus_5344#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||