cluster # 535

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Anopheles gambiae
cluster # 535 cluster # 535 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_535#0 length = 585 sequences # 1

consensus_535#1 length = 271 sequences # 1

consensusID : consensus_535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCCATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTTTCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTACGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCGACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAAACGGCGTGTGCGTGTCCCTGACACTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAATCTTACACACACATTTTTTCCTGCAAACCCGTCAACCAGGTAGCGCCGCGCGGCGCTCTAGGGTTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA]

[+] EMBL BM622146             [CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCCATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTTTCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTACGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCGACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAAACGGCGTGTGCGTGTCCCTGACACTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAATCTTACACACACATTTTTTCCTGCAAACCCGTCAACCAGGTAGCGCCGCGCGGCGCTCTAGGGTTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA]




>consensus_535#0
CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCC
ATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTT
TCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTA
CGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCG
ACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAA
ACGGCGTGTGCGTGTCCCTGACACTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAATCT
TACACACACATTTTTTCCTGCAAACCCGTCAACCAGGTAGCGCCGCGCGGCGCTCTAGGG
TTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACATACA
CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTGCCAT
ACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA

consensusID : consensus_535#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [CAGCAGAAATCGGCACGAGGGTCATGAACACATACACAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGGGGAAGGAGATTCGCGTTTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCATTCCGCGTGTCACCCTTCGTCCCGTACCGTTTTTCATCACGTAATAATACACACAAGTCGCGACGGGGTTTGAGCTGATCGAGTACGACGTG]

[+] EMBL BX469544             [CAGCAGAAATCGGCACGAGGGTCATGAACACATACACAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTGCAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGGGGAAGGAGATTCGCGTTTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCATTCCGCGTGTCACCCTTCGTCCCGTACCGTTTTTCATCACGTAATAATACACACAAGTCGCGACGGGGTTTGAGCTGATCGAGTACGACGTG]




>consensus_535#1
CAGCAGAAATCGGCACGAGGGTCATGAACACATACACAGAGAGAGAGAGAGAGACTGCTG
CCATACCGCAGCACTGCAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGG
GGAAGGAGATTCGCGTTTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCAT
TCCGCGTGTCACCCTTCGTCCCGTACCGTTTTTCATCACGTAATAATACACACAAGTCGC
GACGGGGTTTGAGCTGATCGAGTACGACGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_535#0      CCGCCCACGCGTCCGTGTAATCGGAATTGGTTGTGTGTGCCCCGTGCGTTGTCTCTCGCC 60
consensus_535#1      ------------------------------------------------------------
                                                                                 

consensus_535#0      ATAGTTCTCGCGGCCCGGTTCTCTTCACGCATTGCTCCCCTTCCCCTGACGCGGCTGCTT 120
consensus_535#1      ------------------------------------------------------------
                                                                                 

consensus_535#0      TCCACACCGTCGGTCGCTCGCTCGATCGATCGATCGATCTATTAATTAACGCGACGGGTA 180
consensus_535#1      ------------------------------------------------------------
                                                                                 

consensus_535#0      CGCGATTACGCGCTGGCGTGTGCGTGACCGATGCTGGCGCGTTCCGTAAACATCTAGCCG 240
consensus_535#1      -------------------------------------------CAGCAGAAATCGGCACG 17
                                                                * * * * ***    **

consensus_535#0      ACGAATATAGATACTGCAACCTTCACGCAAGGCGCCAACGACTACGATAGTTCCCCAAAA 300
consensus_535#1      AGGGTCATGAACAC-ATACACAGAGAGAGAGAGAGAGACTGCTGCCATACCGCAGCACTG 76
                     * *   **  * **   *  *     *  **      **  ** * ***   *  **   

consensus_535#0      ACGGCGTGTGCGTGTCCCTGACA---CTGTGTGCGTTGTAGAGAAGAAGAAGCAAAAAAA 357
consensus_535#1      CAGTCATTGGCCCAACCAAATCAAACCCCCGTACAGGACCGCGGGGAAGGAGATTCGCGT 136
                       * * *  **    **    **   *   ** *      * *  **** **        

consensus_535#0      TCTTACACACACATTTTTTCCTGCAAAC-CCGTCAACCAGGTAGCGCCGCGCGGCGCTCT 416
consensus_535#1      TTTTGTAAAGCTTCAGTTTTCGTCAATTACCATCCATTAGCCATT-CCGCGTGTCACCCT 195
                     * **  * *       *** *  ***   ** ** *  **  *   ***** * * * **

consensus_535#0      AGGGTTGATCGCAAACAGGCTCCACGGTGTAGTGCCAAAGAGGAAAGAGCCTTGAACACA 476
consensus_535#1      ----TCGTCCCGTACCGTTTTTCATCACGTAAT----AATACACACAAGTCGCGACGGGG 247
                         * *  *   * *    * **    *** *    ** *   *  ** *  **     

consensus_535#0      TACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTG 536
consensus_535#1      TTTGAGCTGATCGAGTACGACGTG------------------------------------ 271
                     *       **  ***   **                                        

consensus_535#0      CCATACCGCAGCACTGCAGTCATTTGCCCAACCAAATCAAACCCCCGTA 585
consensus_535#1      -------------------------------------------------