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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 898 fasta sequence
[GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATT-GT-TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCG-GTTCG-GAGTGGTCTTTCTGATGCTTTCGGCGCTGT-TCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCAGGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATNTTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACANATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTGACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA]
[+] EMBL BX467484 [GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTCGT TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCG GTTCG GAGTGGTCTTTCTGATGCTTTCGGCGCTGT TCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCAGGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATNTTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACANATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTGACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA]
[+] EMBL BX469598 [ tcgCACGAGGTGTAATTGCAGCGGGTTGTGATT GTCTGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAG ]
[+] EMBL AL931935 [ ccCGAGGTTNACGAGGAGCGGGTTGTGATT GT TGTCGCGAAATAATAGTTTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTCGGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGGTGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGTTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGCGTTCGNGAGTGGNC TTCTGATGCTTNCGGCGCTGTCTCGGAATCTACTTCAATACGCGCACCAAG ]
consensusID : consensus_5358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGGCACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTTTGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTATTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAATGAATGAAT]
[+] EMBL BX618582 [GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGAAGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAGCCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGGACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGTATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGCTTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGCGCACCAAGAAGGCACCGGGCGAGATCAGTGCATACAGTGTGTTTAACGAAAACTGCCAGGCTATCGATGGCACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCATTGACTGTGGCGCTTTGGAGCCAATCGTCAGATAGATTTATTTATTTTCGATCGTTATACATGGTTAGGAATGTATTGGACGGGTGAGATTAACAGTTTACAACACACAAAAAAACGCAATTTTTAAAAGGGTAATGAATGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5358#0 GCCAGAATCNCCACGAGGTGAAATTGCAGCGGGTTGTGATTGTTGTCGCGAAATAATAGT 60
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 TTTAAAAGAACAAAATACGCATGGAAAATAAACTAGATAGCTACCGGAAAACAAAACGTC 120
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 GGCAAGCGCTCCTAAACGACGTTAAGGATAGGATTTACAACATGGTATCCTTCCACCAGG 180
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 TGCAAACGGAGGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA 240
consensus_5358#1 ----------GGAGAAAGCGTCCCACGTCATTATAGAAGCGGATAATGAGCCACCACCGA 50
**************************************************
consensus_5358#0 AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG 300
consensus_5358#1 AGGAAAGCAACAGTAGGAGGAAAGGCGTGGAGGTGGAAGTTGCGAAAATCAAAGCCAAAG 110
************************************************************
consensus_5358#0 TTTTCCGTTCCTTTCCCACCCAGCCGGAACCAGCGACTTTCGACGAGTCGGATCATTCGG 360
consensus_5358#1 CCTTCCGTTCCTTTCCGAGCCAGCCGGAACCAGCAACCTTCGACGAGTCGGATCATTCGG 170
************** * *************** ** **********************
consensus_5358#0 ACGGTGCATTAACGAACGTGACCGATGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT 420
consensus_5358#1 ACGGTGCATTAACGAACGTGGCAGTAGAGCCGGAAGCTAAACCGCGCTCCTGGCTTACGT 230
******************** * * **********************************
consensus_5358#0 ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC 480
consensus_5358#1 ATGTAACATACCTGGTGTACTTCCTCTTTTGGGCTACCCTGTATGCCATCGCGATAGAGC 290
************************************************************
consensus_5358#0 TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC 540
consensus_5358#1 TTCGGTTCGGAGTGGTCTTTCTGATGCTTTCGGCGCTGTTCGGAATCTACTTCAATACGC 350
************************************************************
consensus_5358#0 GCACCAAGAAGGCACCGGGCGAGATCAGGTGCGTACAGTGTGTTTAACGAAAAACTGCCA 600
consensus_5358#1 GCACCAAGAAGGCACCGGGCGAGATCAG-TGCATACAGTGTGTTTAACGAAAA-CTGCCA 408
**************************** *** ******************** ******
consensus_5358#0 GGGCTATCGATGGCCGACTCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA 660
consensus_5358#1 GG-CTATCGATGGC--ACCCTAAAGGCTGAACAATTTGAGCGGGAGATTGGCATAAGGCA 465
** *********** ** *****************************************
consensus_5358#0 TTGACTGTGGCCGCTTTGGAAGAAAAGCCCAATTCGTCCAGATGGACTGTANTTGTCATN 720
consensus_5358#1 TTGACTGTGGC-GCTTTGGAG-------CCAAT-CGTC-AGATAGATT-TATTT---ATT 511
*********** ******** ***** **** **** ** * ** ** **
consensus_5358#0 TTCGATCCGGTTAAATACCATTGGGTTTAGGGAAATGGTACTTTGGGACCGAGTTGACAN 780
consensus_5358#1 TTCGATC--GTTATACATGGTTAGG--------AATGT---------ATTGGACGGGTGA 552
******* **** * * ** ** **** * * *
consensus_5358#0 ATTCACCAGTTTAGCCAACCGCACCAAGAAAAACGGCAATTTTTCAAACAGGGGTAATTG 840
consensus_5358#1 GATTAACAGTTTA-----CAACACACAAAAAAACG-CAATTTTTAAAAGGGTAATGAATG 606
* * ******* * *** * ******* ******** *** * * * **
consensus_5358#0 ACTTGCACTCCACTTGGGNATGTGNNANTCTTAGCNCGTCACCCTCTTGTGAACGACA 898
consensus_5358#1 AAT------------------------------------------------------- 609
* *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||