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Anopheles gambiae
cluster # 5359 cluster # 5359       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5359#0 length = 1193 sequences # 3  
consensus_5359#1 length = 590 sequences # 1  

consensusID : consensus_5359#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1193
fasta sequence
                              [GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGGAGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGCCATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTGTCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG]

[+] EMBL AL931944             [GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGGAGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGCCATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTGTCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CNS08J6K             [                                                                                                                                                                                                                                                              TGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTTTGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGG GCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG]
[+] EMBL CNS08ZU4             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cgTTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAA                                                                           ]


>consensus_5359#0 GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAA CAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGG AGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGC CATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTG TCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGC GGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAA GAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACT GTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGA TGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTT CGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGG TTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAA AGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATC GTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCA TGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGG AACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACAC AGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGG AAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAAT TGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAA TAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGA ATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG



consensusID : consensus_5359#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence
                              [CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATGAACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGATACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGCGGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCCGGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC]

[+] EMBL BM617270             [CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATGAACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGATACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGCGGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCCGGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC]


>consensus_5359#1 CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATG AACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTA ATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAAC CAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGAT ACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCT TTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGG GTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGC GGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCC GGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCA ACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5359#0      GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAA 60
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      CAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGG 120
consensus_5359#1      -------------------------------------------------------CCGGG 5
                                                                             ** **

consensus_5359#0      AGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGC 180
consensus_5359#1      CGTTTATCTGAGCATCCTTCCAGTT---GCTGGACCCG-------AAACCAATCGCACAA 55
                       *   ***  * *   *    **     *  ****  *       ****** *  * *  

consensus_5359#0      CATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTG 240
consensus_5359#1      AAATGAAC--GCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGG 113
                       * *  *   **  * * * **     *  * ***** * ** *  **    ** *** *

consensus_5359#0      TCGAAATGGAAATGTGCATCCCATTTCCGG--GGGCGGAAAAGGTAGATGGGATGGGTAA 298
consensus_5359#1      T-GGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCG 172
                      * *   *      *  *****     *       **        * *****  * * *  

consensus_5359#0      G-CGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCG 357
consensus_5359#1      GACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGG--GGACA 230
                      * ** *** * *  **   **   ** * *   *      *     **  * *  *  * 

consensus_5359#0      CAAGAACGTGCCACAGCTGTGGGCAGT-CTTGCCGAAAGGCGCCACTGATCGCTTGCGAT 416
consensus_5359#1      CAATAACG----ATACGTGCGATTCGTGCAAGGAGGGCGGCGC-ACTGCTCTGCTGCGAC 285
                      *** ****    * *  ** *    ** *  *  *   ***** **** **   ***** 

consensus_5359#0      TACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACG 476
consensus_5359#1      CGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATA 345
                         ***         ******* **  ****  ******** **  ***    *   *  

consensus_5359#0      ACG-ATGTGGA-TGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAAC--TGGTCAC 532
consensus_5359#1      CCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGAC 405
                       ** * * * * ** * * *    ****  **  * *  * * *    ***  * ** **

consensus_5359#0      CTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCA 592
consensus_5359#1      GCGTGGGGTACGGGCGGAAAGC-TACGGGTGCGCGATCG---CAGC--CTGTCCCACAAA 459
                         **     *   * **  ** ***** ** *  ****   ****  *  *       *

consensus_5359#0      CGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTT 652
consensus_5359#1      AGCTTCACCTCGAGC--AGCTCCGGCGGTAAGCAT-TCGCACGAT------------GGT 504
                       *   *   *  * *  *  *** ***  ***     ****  *             * *

consensus_5359#0      GAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCAC-CGTCGATCGAGTATCACT 711
consensus_5359#1      GACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATT 564
                      **    ** * ***** *** * **  *   *    ** ** *  *  ***      * *

consensus_5359#0      ACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGA 771
consensus_5359#1      ----GCGATGAGTTCAGCTGCTTCGCTGGC------------------------------ 590
                          **   * *  * ****** *  * **                              

consensus_5359#0      ACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTAC 831
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      AGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAA 891
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      ACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAAC 951
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      GGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAA 1011
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      GATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGA 1071
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      TGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAA 1131
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      CATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCC 1191
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      GG 1193
consensus_5359#1      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)