These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1193 fasta sequence [GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGGAGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGCCATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTGTCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG] [+] EMBL AL931944 [GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGGAGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGCCATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTGTCGAAATGGAAATGTGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGGCGCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAAC ] [+] EMBL CNS08J6K [ TGCATCCCATTTCCGGGGGCGGAAAAGGTAGATGGGATGGGTAAGCGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTTTGGGATTGGTGCCGCTGCCCGCAAGAACGTGCCACAGCTGTGGGCAGTCTTGCCGAAAGG GCCACTGATCGCTTGCGATTACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACGACGATGTGGATGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAACTGGTCACCTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCACGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTTGAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCACCGTCGATCGAGTATCACTACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGAACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTACAGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAACATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCCGG] [+] EMBL CNS08ZU4 [ cgTTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAAACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAACGGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAAGATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGATGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAA ] consensusID : consensus_5359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATGAACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGATACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGCGGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCCGGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC] [+] EMBL BM617270 [CCGGGCGTTTATCTGAGCATCCTTCCAGTTGCTGGACCCGAAACCAATCGCACAAAAATGAACGCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGGTGGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCGGACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGGGGACACAATAACGATACGTGCGATTCGTGCAAGGAGGGCGGCGCACTGCTCTGCTGCGACCGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATACCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGACGCGTGGGGTACGGGCGGAAAGCTACGGGTGCGCGATCGCAGCCTGTCCCACAAAAGCTTCACCTCGAGCAGCTCCGGCGGTAAGCATTCGCACGATGGTGACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5359#0 GATCGCCCCGAGGTTCACGATGGTGACATAACGATTCGCTAGCAGGCTGCAGCGAACCAA 60 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 CAACGCCCCCGTCGGAGGCGATTGCGATGAGTTCAGCTGCTTCGCTGGCCGCTGACCTGG 120 consensus_5359#1 -------------------------------------------------------CCGGG 5 ** ** consensus_5359#0 AGCAGATCGAATCGCGCGCGGAGAAAAAGTGGGACGAGTGTAGTAAAACCACTAACTCGC 180 consensus_5359#1 CGTTTATCTGAGCATCCTTCCAGTT---GCTGGACCCG-------AAACCAATCGCACAA 55 * *** * * * ** * **** * ****** * * * consensus_5359#0 CATTCGATCAGCTCATAGAAGCGGCTCGGATACTCAATCCGAAGCAATTTGAGCTACCTG 240 consensus_5359#1 AAATGAAC--GCCAAAATAGGCAAGCAGCGTGCTCAACCGGACGACATGATGGCCACCGG 113 * * * ** * * * ** * * ***** * ** * ** ** *** * consensus_5359#0 TCGAAATGGAAATGTGCATCCCATTTCCGG--GGGCGGAAAAGGTAGATGGGATGGGTAA 298 consensus_5359#1 T-GGCCTAATGCCGCTCATCCAGGCCCTCATTAAGCCACCGGAATCGATGGATTCGCTCG 172 * * * * ***** * ** * ***** * * * consensus_5359#0 G-CGGAACAAACCGAAAAAGATGCACGAGCTCGATAGTCAGGGATTGGTGCCGCTGCCCG 357 consensus_5359#1 GACGCAACCAGCAAAAGCGGAACAACCATCCGTACTACAGGAAGCCGGGACGG--GGACA 230 * ** *** * * ** ** ** * * * * ** * * * * consensus_5359#0 CAAGAACGTGCCACAGCTGTGGGCAGT-CTTGCCGAAAGGCGCCACTGATCGCTTGCGAT 416 consensus_5359#1 CAATAACG----ATACGTGCGATTCGTGCAAGGAGGGCGGCGC-ACTGCTCTGCTGCGAC 285 *** **** * * ** * ** * * * ***** **** ** ***** consensus_5359#0 TACTGTGAGCTGGTGTTCCACCAGGACTGTCTTGATCCGCCGCTTACGGCAATGCCCACG 476 consensus_5359#1 CGATGTCCATCCTCTTTCCACCTGGGGTGTCACGATCCGCCACTCTCGGAGGAGGAAATA 345 *** ******* ** **** ******** ** *** * * consensus_5359#0 ACG-ATGTGGA-TGTGCCCGAACCACGTTGAACAGTATGTGGACTCCAAAC--TGGTCAC 532 consensus_5359#1 CCGTACGGGCAGTGGGTCTGCCATACGTGCAAATGCAAATCGGCGATGAACGTTAGTGAC 405 ** * * * * ** * * * **** ** * * * * * *** * ** ** consensus_5359#0 CTCTGTTTCGCTAACCGAGCGCATACGGTTGTGGAATCGGTTCAGCAACGATATTGAGCA 592 consensus_5359#1 GCGTGGGGTACGGGCGGAAAGC-TACGGGTGCGCGATCG---CAGC--CTGTCCCACAAA 459 ** * * ** ** ***** ** * **** **** * * * consensus_5359#0 CGACACGGTTAAAACCGAATTCCTGCGCAAAGTGCACCGCAAAAATCCTCCATTTCGGTT 652 consensus_5359#1 AGCTTCACCTCGAGC--AGCTCCGGCGGTAAGCAT-TCGCACGAT------------GGT 504 * * * * * * *** *** *** **** * * * consensus_5359#0 GAAGCAAAAGTTTCGCCAGCGGACTAAAATCATTGTACCAC-CGTCGATCGAGTATCACT 711 consensus_5359#1 GACAATAACGATTCGCTAGCAGGCTGCAGCGAACCAACAACGCCCCCGTCGGAGGCGATT 564 ** ** * ***** *** * ** * * ** ** * * *** * * consensus_5359#0 ACCAGCATCGTGCACCGCTGCTGCCTTCGCTTACGACGTTCCTGCGATCGCGACAGGTGA 771 consensus_5359#1 ----GCGATGAGTTCAGCTGCTTCGCTGGC------------------------------ 590 ** * * * ****** * * ** consensus_5359#0 ACCCTTCCATGCATTTCCAGGATGCACAGCCCGTTCAGTACGATGACGAGACGCTGCTAC 831 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 AGTTTTTGGAACGCGAGCTGCAACATTCGAGGAAGCGGACGAACGAATGGGTTTTGAAAA 891 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 ACAGAACACAGGCGAAGATGGAAGTGGTGATGAATGTGCAGAGGAAACTGAGCAGAAAAC 951 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 GGACGACGGAAAAGCTGGCGGACACGATGCTGGATGTAATGGCAGGTGCGAGGATGTTAA 1011 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 GATGGAAATTGATTCGGTCGTTGAAAATGGTAGCAGCAATGTTGATGGTGGTACAGTCGA 1071 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 TGCAGCTAATAGTTCTGTGGCACCAAGCTCAAGCTCGAACGCAGCAAATAATACGATAAA 1131 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 CATTACTGAATCATGTTATCAAAATGAACATGCAATGCGAGACTGGGATAATCTGGGGCC 1191 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 GG 1193 consensus_5359#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||