These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1212 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCACACGGCCGAGCAGGATCGGAAAAATCTCACCGCAAACACAGTGCACCGACGGTTACCGTTTCCCCCACTCACCCGTTCCTCCCTGCGCTCTATACGCCGCGTGACACGTGGAGAGCAAGAAGCGTCGTCGTCGTCGCCTACTGTTTGGTTCTATTTATTGCGGACGGGGTTCATCAGATTTTAACGACCAAAATTAGTGGTTTGTAGTGGGACAAGATCACATCAACGAAGCGTGAAGACCCCCCGTTATTATAGCCAGTGCGACAGCGTGATAAAAGTGCATCCAGTGTATGTGTGTGCAATGCAGCGCACAGCGAGTGTGGCCGGGACATTGCATAACGGATAAAAAATAGGTGCCTCTGCCACCCAAAATCCACTCCACCCAGGCCGAACGTGGCTGTTGTGGCCCTTTTCCCCGGGAAACACGTGGAGAGCAAGCCGGGCCTACAATTTAACGACCCGCTTACACACCTGCAAAAACGTGCTCGGCCGGCAGCTCGGCTCGGGAGCAAATCGATCATACTACAAAATGCATTTCCGCACACTGTCGTACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCTACCGTCTGTCGAATGTGGCAAGATACTGTTCCTCGTCCCATTCCCAGCACCATCCCACTGGCTGTGGATAGAGCACTTCGTCAAGGAGCTGCTGTCCCGGGGGCACGAGGTAACGGCGATCACTAACTTCCCTGCGAAGGAAGCGCACCGCAACTACACGGAAATACTGATCGATCCACCGTACGATATACCTTACTACTTTCCCGTGTCGGATATCTACGATTCGAAGTACAACAGTGATCTTAACAACCTGTTCCTCTACTGGAGGGTAGGCATTTCGACGACACAGTACGCGCTGGAGAACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAATTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATTGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCAGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGAGCCGATCTGGTGATACGGCAGCT] [+] EMBL BM576701 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCACACGGCCGAGCAGGATCGGAAAAATCTCACCGCAAACACAGTGCACCGACGGTTACCGTTTCCCCCACTCACCCGTTCCTCCCTGCGCTCTATACGCCGCGTGACACGTGGAGAGCAAGAAGCGTCGTCGTCGTCGCCTACTGTTTGGTTCTATTTATTGCGGACGGGGTTCATCAGATTTTAACGACCAAAATTAGTGGTTTGTAGTGGGACAAGATCACATCAACGAAGCGTGAAGACCCCCCGTTATTATAGCCAGTGCGACAGCGTGATAAAAGTGCATCCAGTGTATGTGTGTGCAATGCAGCGCACAGCGAGTGTGGCCGGGACATTGCATAACGGATAAAAAATAGGTGCCTCTGCCACCCAAAATCCACTCCACCCAGGCCGAACGTGGCTGTTGTGGCCCTTTTCCCCGGGAAACACGTGGAGAGCAAGCCGGGCCTACAATTTAACGACCCGCTTACACACCTGCAAAAACGTGCTCGGCCGGCAGCTCGGCTCGGGAGCAAATCGATCATACTACAAAATGCATTTCCGCACACTGTCGTACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCTACCGTCTGTCGA ] [+] EMBL BM637900 [ ccgCGATCATACTACAAAATGCATTTCCGCGCACTGTCGTACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCCAACGTCTGTCGAATGTGGCAAGATACTGTTCCTCGTCCCATTCCCAGCACCATCCCACTGGCTGTGGATAGAGCACTTCGTCAAGGAGCTGCTGTCCCGGGGGCACGAGGTAACGGCGATCACTAACTTCCCTGCGAAGGAAGCGCACCGCAACTACACGGAAATACTGATCGATCCACCGTACGATATACCTTACTACTTTCCCGTGTCGGATATCTACGATTCGAAGTACAACAGTGATCTTAACAACCTGTTCCTCTACTGGAGGGTAGGCATTTCGACGACACAGTACGCGCTGGAGAACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAATTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATTGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCAGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGAGCCGATCTGGTGATACGGCAGCT] consensusID : consensus_5364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1123 fasta sequence [GCAAGAATCCCCCGAGGTNGCACGAGGCGACGACACAGTACGCGCTGGAGGACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAGTTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATCGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCGGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGGCCGATCTGGTGATACGGCAGCTTTACTACATCCCCCAGCAGAACAGGCTCGCTCAGATACACTTTGCCAAAATAGAAGGTCCCGAGCTGATGCCTTCGATTCGAGATCTCGAAAAGTCCATCTCTGTGATACTGGTCAACAGTCACCTGTCGACGTCACCCCCGCGACCCACCATCCCCGGCCTGGTGAATGTGGCCGGCGCACACATCAAGCCGGCAAAAGAGCTACCCGACGACATCCGGAAGTTCCTGGACGGTGCCAAAGAGGGCGTCATCTTCTTCAGCCTCGGCTCGTACATGAAGAGCGCCGACATGCCCAAGGACAAGATGAAAGCGTTCCTGGAGGTGTTCCGCAATATCAAGCAGCGCGTACTGTGCAAGTACGAAAACGAGGACGTTGCCCGGCTGCCGAAAAACGTGATGGTGCGCAAGTGGCTAACCCAAAGCGACATCCTAGCCCA-CCGAAGGTGGTACTGTTCATCACGCACGGCGGTATGTTTGGCAGCCAGGAGGGCATCTACCGCGGAGTGCCCATGCTGTACATACCGTTCTACGGGGATCAGCATCGCAATGCGCTCAAGGCGGAGCAGGCAGGCTACGCACTGACGCTCAACTTCCCCGAGGTGAACGTCATCACGCTCGGTTCGCGCATTAACGAGCTGCTCACGAACCCGACGTTCATGAAGCAGGCAAAACGGGCGTCGGAACTGTTCCGGGACAATCTCGTGCCGCCGATGCAGGAAGCGATGCACTGGATCGAGTACGTGATGCGGCACAAGGGCGCAAAGCATCTGAAGACGCGCGCGATC] [+] EMBL AL932000 [GCAAGAATCCCCCGAGGTNGCACGAGGCGACGACACAGTACGCGCTGGAGGACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAGTTCTATCAGGAAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATCGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTCACCCGGTACTGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTTCTGATCTCACTGGCCGATCTGGTGATACGGCAGCTTTACTACATCCCCCAGCAGAACAGGCTCGCTCAGATACACTTTGCCAAAATAGAAGGTCCCGAGCTGATGCCTTCGATTCGAGATCTCGAAAAGTCCATCTCTGTGATACTGGTCAACAGTCACCTGTCGACGTCACCCCCGCGACCCACCATCCCCGGCCTGGTGAATGTGGCCGGCGCACACATCAAGCCGGCAAAAGAGCTACCCGACGACATCCGGAAGTTCCTGGACGGTGCCAAAGAGGGCGTCATCTTCTTCAGCCTCGGCTCGTACATGAAGAGCGCCGACATGCCCAAGGACAAGATGAAAGCGTTCCTGGAGGTGTTCCGCAATATCAAGCAGCGCGTACTGTGCAAGTACGAAAACGAGGACGTTGCCCGGCTGCCGAAAAACGTGATGGTGCGCAAGTGGCTAACCCAAAGCGACATCCTAGCCCA CCGAAGGTGGTACTGT ] [+] EMBL BX618498 [ ACGAAAACGAGGACGTTGCCCGGCTGCCGAAAAACGTGATGGTGCGCAAGTGGCTACCCCAAAGCGACATCCTAGCCCACCCGAAGGTGGTACTGTTCATCACGCACGGCGGTATGTTTGGCAGCCAGGAGGGCATCTACCGCGGAGTGCCCATGCTGTACATACCGTTCTACGGGGATCAGCATCGCAATGCGCTCAAGGCGGAGCAGGCAGGCTACGCACTGACGCTCAACTTCCCCGAGGTGAACGTCATCACGCTCGGTTCGCGCATTAACGAGCTGCTCACGAACCCGACGTTCATGAAGCAGGCAAAACGGGCGTCGGAACTGTTCCGGGACAATCTCGTGCCGCCGATGCAGGAAGCGATGCACTGGATCGAGTACGTGATGCGGCACAAGGGCGCAAAGCATCTGAAGACGCGCGCGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5364#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGCACACGGCCGAGCAGGATCGGAAAAATCTC 60 consensus_5364#1 --------------------------GCAAGAATCCCCCGAGGTNGCACGAGGCGACGAC 34 ** * * ***** * ** * * consensus_5364#0 ACCGCAAACACAGTGCACCGACGGT---TACCGTTTCCCCCACTCACCCGTTCCTCCCTG 117 consensus_5364#1 ACAGTACGCGCTGGAGGACGAGAATGTGCAGCAGTTCATCGAGCAGGACGATACGGACTT 94 ** * * * * * *** * * * *** * * ** * * ** consensus_5364#0 CGCTCTATACGCCGCGTGACACGTGGAGAGCAAGAAGCGTCGTCGTCGTCGCCTACTGTT 177 consensus_5364#1 TGATGTGATCATCTCGGAGCAGTTCTA--TCAGGAAGCGT--TCCTCAT-GTTTGCCCAC 149 * * * * * ** ** * * ** ******* ** ** * * * * consensus_5364#0 TGGTTCTATTTATTGCGGACGGGGTTCATCAGATTTTAACGACCAAAATTAGTGGTTT-- 235 consensus_5364#1 AAGTACCGGGCGCCGATCGTGACGCTCTGCACCCTTGGGCATGCAAATCACATCGATCAA 209 ** * * * * ** ** ** * **** * * * consensus_5364#0 GTAGTGGGACAAGATCACATCAACGAAGCGTGAAGACCCCCCGTTATTATAGCCAGTGCG 295 consensus_5364#1 GCGATGGGACTCG-TTACACCGTGGTCATTTGTTCCTCACCCGGTACTGCTGCT-GTCCG 267 * ****** * * *** * * ** * **** ** * ** ** ** consensus_5364#0 ACAGCGTGATAAAAGTGCATCCAGTG-TATGTGTGTGCAATGCAGCGCACAGCGAGTGTG 354 consensus_5364#1 ACGATATGACATTC-TCCGAGCGGTGCTACAACTTTCTGATCTCAC---TGGCCGATCTG 323 ** *** * * * * *** ** * * ** * ** * ** consensus_5364#0 GCCGGGACATTGCATAACGGATAAAAAATAGGTGCCTCTGCCACCCAAAATCCACTCCAC 414 consensus_5364#1 GTGATACGGCAGCTTTACT-ACATCCCCCAGCAGAACAGGCTCGCTCAGATACACTTTGC 382 * ** * ** * * ** * ** * * ** **** * consensus_5364#0 CCAGGCCGAACGTGGCTGTTGTGGCCCTTTTCCCCGGGAAACACGTGGAGAGCAAGCCGG 474 consensus_5364#1 CAAAATAGAAGGTC-CCGAGCTGATGCCTTCGATTCGAGATCTCGAAAAGTCCATCTCTG 441 * * *** ** * * ** * ** * * * ** ** ** * * consensus_5364#0 GCCTACAATTTAACG---ACCCGCTTAC---ACACCTGCAAA--AACGTGCTCGGCCGGC 526 consensus_5364#1 TGATACTGGTCAACAGTCACCTGTCGACGTCACCCCCGCGACCCACCATCCCCGGCCTGG 501 *** * *** *** * ** ** ** ** * * * * * ***** * consensus_5364#0 --AGCTCGGCTCGGGAGCAAATCGATCATACTACAAAA-TGCATTTCCGCACACTGTCGT 583 consensus_5364#1 TGAATGTGGCCGGCGCACACATCAAGCCGGCAAAAGAGCTACCCGACGACATCCGGAAGT 561 * *** * * ** *** * * * * * * * * * ** * * ** consensus_5364#0 ACATAATCGGTTGTGCTGTTGCATTTACCGCCCTCGGTCTACCGTCTGTCGAATGTGGCA 643 consensus_5364#1 TCCTGGACGGTGCCAAAGAGGGCGTCATCTTCTTCAGCCT--CGGC--TCGTACATGAAG 617 * * **** * * * * * * ** * ** ** * *** * ** consensus_5364#0 AGATACTGTTCCTCGTCCCATTCCCAGCACCATCCCACTGGCTGTGGATAGAGCACTTCG 703 consensus_5364#1 AG----CGCCGACATGCCCAAGGACAAGATGAAAGCGTTC-CTGGAGGTGTTCCGCAATA 672 ** * **** ** * * * * *** * * * * consensus_5364#0 TCAAGGAGCTGCTGTCCCGGGGGCACGAGGTAACGGCGATCACTAACTTCCCTGCGAAGG 763 consensus_5364#1 TCAAGCAGCGCGTACTGTGCAAGTACGAA--AACGAGGAC-----GTTGCCCGGCTGCCG 725 ***** *** * * * **** **** ** * *** ** * consensus_5364#0 AAGCGCACCGCAACTACACGGAAATACTGATCGATCCACCGTACGATATACCTTACTACT 823 consensus_5364#1 AAA---AACGTGATGGTGCGCAAG---TGGCTAACCCAAAG--CGACATCC-----TAGC 772 ** * ** * ** ** ** * *** * *** ** * ** consensus_5364#0 TTCCCGTGTCGGATATCTACGATTCGAAGTACAACAGTGATCTTAACAACCTGTTCCTCT 883 consensus_5364#1 CCACCGAAGGTGGTACTGTTCATC--ACGCACGGCGGTATGTTTGGCAGCCAGGAGGGCA 830 *** * ** ** * * ** * ** ** ** ** * * consensus_5364#0 ACTGGAGGGTAGGCATTTCGACGACACAGTACGCGCTGGAGAACGAGAATGTGCA--GCA 941 consensus_5364#1 TCTACCGCGGAG------TGCCCATGCTGTACATACCGTTCTACGGGGATCAGCATCGCA 884 ** * * ** * * * * **** * * *** * ** *** *** consensus_5364#0 GTTCA-TCGAGCAGGACGATACGGACTTTGATGTGATCATCTCGGAGCAATTCTATCAGG 1000 consensus_5364#1 ATGCGCTCAAGGCGGAGCAGGCAGGCTACGCACTGACGCTCA------ACTTCCCCGAGG 938 * * ** ** *** * * * ** * *** ** * *** *** consensus_5364#0 AAGCGTTCCTCATGTTTGCCCACAAGTACCGGGCGCCGATTGTGACGCTCTGCACCCTTG 1060 consensus_5364#1 TGAACGTCATCACGCTCGGTT--------CGCGCATTAAC-GAGCTGCTCACGAACCCGA 989 ** *** * * * ** ** * * * **** * ** consensus_5364#0 GGCATGCAAATCACATCGATCAAGCGATGGGACTCGTTACACCGTGGTCATTTGTTCCTC 1120 consensus_5364#1 CGTTCATGAAGCAGGCAAAACGGGCGTCGGAACT-GTTCCGGGACAATCTCGTGCCGCCG 1048 * ** ** * * *** ** *** *** * ** ** * consensus_5364#0 ACCCAGTAC----TGCTGCTGTCCGACGATATGACATTCTCCGAGCGGTGCTACAACTTT 1176 consensus_5364#1 ATGCAGGAAGCGATGCACTGGATCGAGTACGTGATGCGGCACAAG-GGCGCAAAGCATCT 1107 * *** * *** * *** * *** * ** ** ** * * * consensus_5364#0 CTGATCTCACTGAGCCGATCTGGTGATACGGCAGCT 1212 consensus_5364#1 GAAGACGCGCGCGATC-------------------- 1123 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||