These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [AAANCCCCATTTTGCAGCGGGTGTGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCAGTACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTACAACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGGGCACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCAGATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTCCTACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGCAGCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGTGCAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCAAAGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTTGTTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCAGTTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG] [+] EMBL AL932006 [AAANCCCCATTTTGCAGCGGGTGTGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCAGTACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTACAACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGGGCACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCAGATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTCCTACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGCAGCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGTGCAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCAAAGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTTGTTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCAGTTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG] consensusID : consensus_5366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 652 fasta sequence [GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTCTACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATTCGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGTACGGTACAGCGCCGCCAGCTCGAGGGTTGCCTGTGCCGTGTGCCGAGCTCGTTCTACAACCTCGTGTGGGATGTGCTGGAGCGAACACCGCACGGCATTACCGTGCAGGGGCACAATCTGCCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTTGCCGCCGAGCAAAGACATTTCGCCACTGTTTTCGCTCTCCTACTCGCAGACGACCGGCTACCTGGCCCGGGCTGCCGTCAACAGTGTGCTGCAGCGGTGCGCCCTCTCCACCGAGGACT] [+] EMBL BX614985 [GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTCTACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATTCGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGTACGGTACAGCGCCGCCAGCTCGAGGGTTGCCTGTGCCGTGTGCCGAGCTCGTTCTACAACCTCGTGTGGGATGTGCTGGAGCGAACACCGCACGGCATTACCGTGCAGGGGCACAATCTGCCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACC ] [+] EMBL BM610406 [ CCGGTTTCAAATTCGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAGGATCACTTCAGTACGGTACAGCGCCGCCAGCTCGAGGGTTGCTTGTGCCGTGTGCCGAGCTCGTTCTACAACCTCGTGTGGGATGTGCTGGAGCGCACACCGCACGGCATTACCGTGCAGGGGCACAATCTGCCCGCCATGCCGACCCTGACCAACAAGAGCCGCAGCGAGCTGTCCTTCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACGCAACCCGAGCGGCGCCAGATCGCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTTGCCGCCGAGCAAAGACATTTCGCCACTGTTTTCGCTCTCCTACTCGCAGACGACCGGCTACCTGGCCCGGGCTGCCGTCAACAGTGTGCTGCAGCGGTGCGCCCTCTCCACCGAGGACT] [+] EMBL BX613063 [ CTGTGCATGGTGGCCACCATACTGAGCCGCAATCCGGAGCTGCGCTTCCAGCAGGGGCTCGATCTCGACCTGCTGCTGGAGGACTCGTTCGCGATGTACTGCAAAGACCACAGCTGGCCGCCGAGCAAAGACATTTCGCCACTGTTTTCGCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5366#0 ------------------------------------------------------------ consensus_5366#1 GACATTTTCAAGGGCATCCTGAAGATTCGCGTCGGTTGGGTGCTGGAGGCGATGCGGCTC 60 consensus_5366#0 --------------------------------------------------------AAAN 4 consensus_5366#1 TACCTCACGATGAAGGGGGACGAAGGGGCGGATATTGAAAATTTGTCCCCGTTTCAAATT 120 ** consensus_5366#0 CCCCATTT--TGCAGCGGGTG-TGACTGTGAGCCAGTGGGCAAATGAGTGATCACTTCAG 61 consensus_5366#1 CGCCAGCTGCTGCAGCGGGTGCTGACCGTGAGCCAGTGGGCAAATGAG-GATCACTTCAG 179 * *** * *********** **** ********************* *********** consensus_5366#0 TACGGTACAGCTGCCGCCAGCTCGAGGGTTGCTTGTGCCTGTGTGCCGAGCTCGTTCTAC 121 consensus_5366#1 TACGGTACAGC-GCCGCCAGCTCGAGGGTTGCCTGTGCC-GTGTGCCGAGCTCGTTCTAC 237 *********** ******************** ****** ******************** consensus_5366#0 AACCTCGTGTNTGGATGTGCTGGAGCTGCACACCTGCACTGGGATTACCTGTGCAGTGGG 181 consensus_5366#1 AACCTCGTGTG-GGATGTGCTGGAGC-GAACACC-GCAC-GGCATTACC-GTGCAG-GGG 291 ********** ************** * ***** **** ** ****** ****** *** consensus_5366#0 CACAATCTGCCTGCCATGTCCTGACCCTGTACCAACAAGAGCCTGCAGCTGAGCTGTCCT 241 consensus_5366#1 CACAATCTGCCCGCCATGCC--GACCCTG-ACCAACAAGAGCC-GCAGC-GAGCTGTCCT 346 *********** ****** * ******* ************* ***** ********** consensus_5366#0 TCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCACTGCAACCTGATGCTGGCTGCCAG 301 consensus_5366#1 TCTCGCTGCAGGTCGAGGAGATGCTGCACCAAATCAC-GCAACCCGA-GCGG--CGCCAG 402 ************************************* ****** ** ** * ***** consensus_5366#0 ATCTGCTGGTCGAGCTGCTGTGCATTGTTGGCACCATACTGAGCCTGCAATCCTGGAGCT 361 consensus_5366#1 ATC--GCGGTCGAGCTGCTGTGCATTGTGGCCACCATACTGAGCC-GCAATCC-GGAGCT 458 *** ********************* * ************** ******* ****** consensus_5366#0 GCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTTGCTTGGAGGACTCGTTCGCGATGTAC 421 consensus_5366#1 GCGCTTCCAGCAGGTGCTCGATCTCGACCTGCTG--CTGGAGGACTCGTTCGCGATGTAC 516 ********************************* *********************** consensus_5366#0 TGCAAAGACCACATGCTTGCCTGCCGAGCAAAGACATTTCGCCACTGTTTTCGCGTCTCC 481 consensus_5366#1 TGCAAAGACCACA-GCTTGCC-GCCGAGCAAAGACATTTCGCCACTGTTTTCGC-TCTCC 573 ************* ******* ******************************** ***** consensus_5366#0 TACTCGCATGACTGACCGGNTACCTTGGCCCTGGGCTTGCCTGTCAACAGTGTGCTTGCA 541 consensus_5366#1 TACTCGCA-GAC-GACCGGCTACCTGG--CCCGGGCTG--CCGTCAACAGTGTGCT-GCA 626 ******** *** ****** ***** * ** ***** * ************** *** consensus_5366#0 GCGGTGCGCCCTCTCCACCGAGNGACTTTGCCGATGACTGTGGAGGATCATTGTCGCGTG 601 consensus_5366#1 GCGGTGCGCCCTCTCCACCGAGG-ACT--------------------------------- 652 ********************** *** consensus_5366#0 CAGTAGACGNGACCCGAGGGAGGAAATAACGGGGTATATACAAACGCGGTTGTATACCAA 661 consensus_5366#1 ------------------------------------------------------------ consensus_5366#0 AGCTACTGCTGCGTTGCTAGTCGAACACATGGGNGAAAGGCAGGACGTGCAGTGGATTTG 721 consensus_5366#1 ------------------------------------------------------------ consensus_5366#0 TTGTTTGTTTGTTATATATTTTTAAACGCTCGGCTAGGTTTGTAAGTGTTAGCTTTGCAG 781 consensus_5366#1 ------------------------------------------------------------ consensus_5366#0 TTGAGGTTTGCGTAATTGATCTTTTATGAAATGTTG 817 consensus_5366#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||