cluster # 5367

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Anopheles gambiae
cluster # 5367 cluster # 5367 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5367#0 length = 660 sequences # 3

consensus_5367#1 length = 581 sequences # 1

consensusID : consensus_5367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 660
fasta sequence

                              [GTGAGATGAGGTATTTTTTATTTTATCTTTGTCATGAAAACGCATAACACATTCAAACCTAGGTTTGACAGCCCTGCTATACAATCAGCTGTTTTGCTTGCAAACCGCTGTGTCGTGCATTCAAAACGAGGACCGTTCTATTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGACGTCATCCGGTAAAGAAGCACCGTTGAACTACCATCACAGATCGCCAACACGATACTCGCCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAATTCAATGCATTTGTCGTCAACGAAGGAATAAACAGGTCGCTGGGGCCATCCGGTTCCTTTCTCGCTGTTAGGTAGAACAGTTGCAGCCGCTTCTCGTACGTGTACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACGGCAAGCACCGTAACAGAGCGCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATTCCATCGCTGTGCTCACGGGAAAAGCCGGTCCGTTGTTTTTCCAGTAGGCCAACAGTTCTCGAGGAATTCCCCCCCT]

[-] EMBL CNS08HQ3             [GTGAGATGAGGTATTTTTTATTTTATCTTTGTCATGAAAACGCATAACACATTCAAACCTAGGTTTGACAGCCCTGCTATACAATCAGCTGTTTTGCTTGCAAACCGCTGTGTCGTGCATTCAAAACGAGGACCGTTCTATTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGACGTCATCCGGTAAAGAAGCACCGTTGAACTACCATCACAGATCGCCAACACGATACTCGCCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAATTCAATGCATTTGTCGTCAACGAAGGAATAAACAGGTCGCTGGGGCCATCCGGTTCCTTTCTCGCTGTTAGGTAGAACAGTTGCAGCCGCTTCTCGTACGTGTACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACGGCAAGCACCGTAACAGAGCGCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATTCCATCGCTGTGCTCACGGGAAAAGCCG                                                 ]
[-] EMBL BX622598             [     ATGAGGTATTTTTTATTTTATCTTAGTCATGAAAATGCATAACACATTCAAACCTAGGTTTGACAGCCCTGCTATACAATCAGCTGTTTTGCTTGCAAACCGCTGTGTCGTGCATTCAAAACGAAGACCGTTCTATTTCATTTTGGTGTCTGCTCACAGCCCGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGGCGTCATCCGGTAAAGAAGCACCGTTGAACTACCATCACAGATCGCCAACACGATACTCGCCGGCTTTTGACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGCTGCACCAAATTCAATGCATTTGTCGTCAACGAAGGAATAAACAGGTCGATCGGGCCATCCGGTTCCTTTCTCGCTGTTAGGTAGAACAGTTGCAGCCGCTTCTCGTACGTGTACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACGGCAAGCACC                                                                                                                                                  ]
[+] EMBL CNS08HQ4             [                 TTATTTTATCTTTGTCATGAAAACGCATAACACATTCAAACCTAGGTTTGACAGCCCTGCTATACAATCAGCTGTTTTGCTTGCAAACCGCTGTGTCGTGCATTCAAAACGAGGACCGTTCTATTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGACGTCATCCGGTAAAGAAGCACCGTTGAACTACCATCACAGATCGCCAACACGATACTCGCCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAATTCAATGCATTTGTCGTCAACGAAGGAATAAACAGGTCGCTGGGGCCATCCGGTTCCTTTCTCGCTGTTAGGTAGAACAGTTGCAGCCGCTTCTCGTACGTGTACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACGGCAAGCACCGTAACAGAGCGCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATTCCATCGCTGTGCTCACGGGAAAAGCCGGTCCGTTGTTTTTCCAGTAGGCCAACAGTTCTCGAGGAATTCCCCCCCT]




>consensus_5367#0
GTGAGATGAGGTATTTTTTATTTTATCTTTGTCATGAAAACGCATAACACATTCAAACCT
AGGTTTGACAGCCCTGCTATACAATCAGCTGTTTTGCTTGCAAACCGCTGTGTCGTGCAT
TCAAAACGAGGACCGTTCTATTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTCCTCA
TTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGACGTCA
TCCGGTAAAGAAGCACCGTTGAACTACCATCACAGATCGCCAACACGATACTCGCCGGCT
TTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAATTCAATG
CATTTGTCGTCAACGAAGGAATAAACAGGTCGCTGGGGCCATCCGGTTCCTTTCTCGCTG
TTAGGTAGAACAGTTGCAGCCGCTTCTCGTACGTGTACTGCACATCGTGCATGTGCTTTT
CTTCTTGCAGATGAATGTAAACACGGCAAGCACCGTAACAGAGCGCATCATCTTCACACC
CTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATTCCATCGCTGTGCTCAC
GGGAAAAGCCGGTCCGTTGTTTTTCCAGTAGGCCAACAGTTCTCGAGGAATTCCCCCCCT

consensusID : consensus_5367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [GTTCANACCTAGGTTTGACAGCCCTGNNTATACAGTCAGCTGTTTTGCTTGGCANAACCGCTGTGTCGTGCATTCAAAACGAGGACCGTTCTAGTTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGACGTCATCCGGTAAAGAAGCACCAGTTGAACTACCATCACAGATCAGCCAACACGATACTCGCCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAATTCAATGCATTTGTCAGTCAACGAAGGAATAAACAGGTCAGCTGGGGCCATCCAGGTTCCTTTCATCAGCATGTTAGGTAGAACAGTTGCAGCCAGCTTCTCGTACAGTGTACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACAGGCAAGCACNCGTAACAGAGCGCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATTCCATCGCTGTGCTAAACCTCGGGCNATTCTT]

[-] EMBL AL932022             [GTTCANACCTAGGTTTGACAGCCCTGNNTATACAGTCAGCTGTTTTGCTTGGCANAACCGCTGTGTCGTGCATTCAAAACGAGGACCGTTCTAGTTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGACGTCATCCGGTAAAGAAGCACCAGTTGAACTACCATCACAGATCAGCCAACACGATACTCGCCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAATTCAATGCATTTGTCAGTCAACGAAGGAATAAACAGGTCAGCTGGGGCCATCCAGGTTCCTTTCATCAGCATGTTAGGTAGAACAGTTGCAGCCAGCTTCTCGTACAGTGTACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACAGGCAAGCACNCGTAACAGAGCGCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATTCCATCGCTGTGCTAAACCTCGGGCNATTCTT]




>consensus_5367#1
GTTCANACCTAGGTTTGACAGCCCTGNNTATACAGTCAGCTGTTTTGCTTGGCANAACCG
CTGTGTCGTGCATTCAAAACGAGGACCGTTCTAGTTTCATTTTGGTGCCTGCTCACAGCC
CGTCCCCGTCCTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTT
CAATCCTGACGTCATCCGGTAAAGAAGCACCAGTTGAACTACCATCACAGATCAGCCAAC
ACGATACTCGCCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGT
TGCACCAAATTCAATGCATTTGTCAGTCAACGAAGGAATAAACAGGTCAGCTGGGGCCAT
CCAGGTTCCTTTCATCAGCATGTTAGGTAGAACAGTTGCAGCCAGCTTCTCGTACAGTGT
ACTGCACATCGTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACAGGCAAGCACNC
GTAACAGAGCGCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAA
GTTTACCATTCCATCGCTGTGCTAAACCTCGGGCNATTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5367#0      GTGAGATGAGGTATTTTTTATTTTATCTTTGTCATGAAAACGCATAACACATTCAAACCT 60
consensus_5367#1      --------------------------------------------------GTTCANACCT 10
                                                                         **** ****

consensus_5367#0      AGGTTTGACAGCCCTGCT-ATACAATCAGCTGTTTTGCTTGC--AAACCGCTGTGTCGTG 117
consensus_5367#1      AGGTTTGACAGCCCTGNNTATACAGTCAGCTGTTTTGCTTGGCANAACCGCTGTGTCGTG 70
                      ****************   ***** ****************    ***************

consensus_5367#0      CATTCAAAACGAGGACCGTTCTA-TTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTC 176
consensus_5367#1      CATTCAAAACGAGGACCGTTCTAGTTTCATTTTGGTGCCTGCTCACAGCCCGTCCCCGTC 130
                      *********************** ************************************

consensus_5367#0      CTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGAC 236
consensus_5367#1      CTCATTCGTAGCAGTTTACCCTTCGATGGCAACTTTTGAGCGATTTCTTTCAATCCTGAC 190
                      ************************************************************

consensus_5367#0      GTCATCCGGTAAAGAAGCACC-GTTGAACTACCATCACAGATC-GCCAACACGATACTCG 294
consensus_5367#1      GTCATCCGGTAAAGAAGCACCAGTTGAACTACCATCACAGATCAGCCAACACGATACTCG 250
                      ********************* ********************* ****************

consensus_5367#0      CCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAAT 354
consensus_5367#1      CCGGCTTTTCACCATCGGGCAGTGTGATCGTCTCTCTGCACTGCTTCAGTTGCACCAAAT 310
                      ************************************************************

consensus_5367#0      TCAATGCATTTGTC-GTCAACGAAGGAATAAACAGGTC-GCTGGGGCCATCC-GGTTCCT 411
consensus_5367#1      TCAATGCATTTGTCAGTCAACGAAGGAATAAACAGGTCAGCTGGGGCCATCCAGGTTCCT 370
                      ************** *********************** ************* *******

consensus_5367#0      TTC-TCGC--TGTTAGGTAGAACAGTTGCAGCC-GCTTCTCGTAC-GTGTACTGCACATC 466
consensus_5367#1      TTCATCAGCATGTTAGGTAGAACAGTTGCAGCCAGCTTCTCGTACAGTGTACTGCACATC 430
                      *** **    *********************** *********** **************

consensus_5367#0      GTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACAC-GGCAAGCACC-GTAACAGAGC 524
consensus_5367#1      GTGCATGTGCTTTTCTTCTTGCAGATGAATGTAAACACAGGCAAGCACNCGTAACAGAGC 490
                      ************************************** *********  **********

consensus_5367#0      GCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATT 584
consensus_5367#1      GCATCATCTTCACACCCTAGTGTGTAGAAGGTTTTGAGAATTTCGTGAAAGTTTACCATT 550
                      ************************************************************

consensus_5367#0      CCATCGCTGTGCTCACGGGAAAAGCCGGTCCGTTGTTTTTCCAGTAGGCCAACAGTTCTC 644
consensus_5367#1      CCATCGCTGTGCT------AAACCTCGGGCNATTCTT----------------------- 581
                      *************      ***   *** *  ** **                       

consensus_5367#0      GAGGAATTCCCCCCCT 660
consensus_5367#1      ----------------