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Anopheles gambiae
cluster # 5370 cluster # 5370       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5370#0 length = 1122 sequences # 3  
consensus_5370#1 length = 540 sequences # 1  

consensusID : consensus_5370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1122
fasta sequence
                              [CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAGTCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGAGTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATCATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAAATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCCAAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT-AGATAAAACATACACACATCCAATCCAATCTATCATCTTCG-ATTGCGCCGGTGCCGTGTGCA-CAT-AGAATCTGTATAGAACTTT--CGCCTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT]

[+] EMBL BM624138             [CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAGTCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGAGTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATCATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAAATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCCAAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT AGATAAAACATACACACATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX621878             [                                                                                                                                                                                                                                                                                                                                                    anTATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT AGATAAAACATACACACATCCAATCCAATCTATCATCTTCG ATTGCGCCGGTGCCGTGTGCA CAT AGAATCTGTATAGAACTTT  CGCCTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT]
[+] EMBL BX619362             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATTCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGNATTGCGCCGGTGCCGTGTGCACCATAANAATCTGTATAGAACTTTTCCGCCTCTTCGC                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_5370#0 CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAG TCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGA GTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATC ATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAA ATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCC AAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTT TAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGA AACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGT GTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTA CTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTG ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC CTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTT GGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACG CGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGG GAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAG TTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAG GGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCC GGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT



consensusID : consensus_5370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTATTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG]

[+] EMBL AL932027             [AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTATTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG]


>consensus_5370#1 AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAA CATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGA ATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTA TTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTG TCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGT CAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGAT ATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAA AGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTT TCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5370#0      CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAG 60
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      TCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGA 120
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      GTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATC 180
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      ATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAA 240
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      ATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCC 300
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      AAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTT 360
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      TAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGA 420
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      AACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGT 480
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      GTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTA 540
consensus_5370#1      ------------------------------------------------------------
                                                                                  

consensus_5370#0      CTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTG 600
consensus_5370#1      --------------------------------------AAGAATCGCCCCGAGGTT---G 19
                                                               *** **     * **   *

consensus_5370#0      ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA 660
consensus_5370#1      ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA 79
                      ************************************************************

consensus_5370#0      ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC 720
consensus_5370#1      ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC 139
                      ************************************************************

consensus_5370#0      CTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTT--- 777
consensus_5370#1      CTCTTCGCTATAGAGATTAAACGAAACGT-GTTTGCTGTGTATTGTTTTTATATGTTATN 198
                      ***************************** ******************** * * **   

consensus_5370#0      TTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAA 837
consensus_5370#1      TCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAA 258
                      * **********************************************************

consensus_5370#0      ACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGA 897
consensus_5370#1      ACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGA 318
                      ************************************************************

consensus_5370#0      AGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAG 957
consensus_5370#1      AGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAG 378
                      ************************************************************

consensus_5370#0      GAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCG 1017
consensus_5370#1      GAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCG 438
                      ************************************************************

consensus_5370#0      CAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAA 1077
consensus_5370#1      CAGGGCCAAATCATCGTGCATTC-GTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAA 497
                      *********************** ************************************

consensus_5370#0      TCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT 1122
consensus_5370#1      TCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTC-CTATATCGGG- 540
                      ********************************  ********** 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)