These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1122 fasta sequence [CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAGTCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGAGTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATCATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAAATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCCAAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT-AGATAAAACATACACACATCCAATCCAATCTATCATCTTCG-ATTGCGCCGGTGCCGTGTGCA-CAT-AGAATCTGTATAGAACTTT--CGCCTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT] [+] EMBL BM624138 [CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAGTCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGAGTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATCATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAAATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCCAAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT AGATAAAACATACACACATCCA ] [+] EMBL BX621878 [ anTATTGATAGGGACAATTTTAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGAAACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGT AGATAAAACATACACACATCCAATCCAATCTATCATCTTCG ATTGCGCCGGTGCCGTGTGCA CAT AGAATCTGTATAGAACTTT CGCCTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTTTTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT] [+] EMBL BX619362 [ GTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGTGTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATTCCATTAGTGCTTACTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGNATTGCGCCGGTGCCGTGTGCACCATAANAATCTGTATAGAACTTTTCCGCCTCTTCGC ] consensusID : consensus_5370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTATTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG] [+] EMBL AL932027 [AAGAATCGCCCCGAGGTTGATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCAATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGCCTCTTCGCTATAGAGATTAAACGAAACGTGTTTGCTGTGTATTGTTTTTATATGTTATNTCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAAACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGAAGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAGGAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCGCAGGGCCAAATCATCGTGCATTCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAATCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTCCTATATCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5370#0 CCGGGTATGTGTGTGTGTTAGGGTAAAACAAGCGTAGGGCACAAAGGTATCCAAACAAAG 60 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 TCGATAGGGATAATTTCGTTTCGTCGGGAAGACACACAGGGCAAACTGGGTAGGGTATGA 120 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 GTTATTAGTAGGAGACAGAAAGGACAACAAACCTAATACTAGAAGCTAGGGCTGTGCATC 180 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 ATGTACTCGGTAGCATTATTATTGAACAAACCCCCGGCTCAGACGGGTGGAGAGAGATAA 240 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 ATTCAGTTGTGAGGCAGCGGAAACGGAAACATACCAAAACGGAACAGATCCAACATTGCC 300 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 AAGTGAAGCCAGCAGGAGATTAAAAAGAATGGGAAGCGTTAATATTGATAGGGACAATTT 360 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 TAAGCCAATTTAACTCAGATTAGGGTACACAAGCTTAGGGATAATGTTAGGGCAAAACGA 420 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 AACAATACTATGTAGGGAATCAGTGTGACTGAGAGAGAACGTGTGAGTGTGTGTGTGTGT 480 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 GTGTGTGAATGGAGTGTATGAGTATGAGTATAATTGTGAGCAAAATGCCATTAGTGCTTA 540 consensus_5370#1 ------------------------------------------------------------ consensus_5370#0 CTTTTTCCGTAGCGTGTAGTTCGTTGTTCAAGGCGTTTGCTAATGGCTAAATGTTTTCTG 600 consensus_5370#1 --------------------------------------AAGAATCGCCCCGAGGTT---G 19 *** ** * ** * consensus_5370#0 ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA 660 consensus_5370#1 ATTTCCGATATCTGAAACGGAGTGGAAAACGGTAGATAAAACATACACACATCCAATCCA 79 ************************************************************ consensus_5370#0 ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC 720 consensus_5370#1 ATCTATCATCTTCGATTGCGCCGGTGCCGTGTGCACATAGAATCTGTATAGAACTTTCGC 139 ************************************************************ consensus_5370#0 CTCTTCGCTATAGAGATTAAACGAAACGTTGTTTGCTGTGTATTGTTTTTTTGTTTT--- 777 consensus_5370#1 CTCTTCGCTATAGAGATTAAACGAAACGT-GTTTGCTGTGTATTGTTTTTATATGTTATN 198 ***************************** ******************** * * ** consensus_5370#0 TTTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAA 837 consensus_5370#1 TCTGGTCAGCAATCAGCAATTAAAAGCAAAAAGATCGTGTTGTCGTGTAAGTAGTGTCAA 258 * ********************************************************** consensus_5370#0 ACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGA 897 consensus_5370#1 ACGCGTTTTCCCTTAGTTCTGGAATCGGTGCAGTTACCGGGTCAGAGTGCATGGGGGAGA 318 ************************************************************ consensus_5370#0 AGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAG 957 consensus_5370#1 AGGGAGTAGTAGGGTACACAGGGCAACAAAACAGAAAGTGATATTATTATTAAAAACAAG 378 ************************************************************ consensus_5370#0 GAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCG 1017 consensus_5370#1 GAGTTCAAATACGTAAGGCACAACAGTAGGGACACAGAGCAAAGGTTAGGGCAGTTAGCG 438 ************************************************************ consensus_5370#0 CAGGGCCAAATCATCGTGCATTCCGTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAA 1077 consensus_5370#1 CAGGGCCAAATCATCGTGCATTC-GTCGCGTCGTGTTCGCGTTTCGCAAAAAAAGCATAA 497 *********************** ************************************ consensus_5370#0 TCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTTTCTATATCGGGT 1122 consensus_5370#1 TCCGGGTCGGGTCGTTAATTCTTCGCGCGCGTC-CTATATCGGG- 540 ******************************** ********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||