cluster # 5374

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Anopheles gambiae
cluster # 5374 cluster # 5374 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5374#0 length = 729 sequences # 1

consensus_5374#1 length = 685 sequences # 2
consensus_5374#2 length = 447 sequences # 1

consensusID : consensus_5374#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAGAGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAAGAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATTCGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCAGTAAAGGTGTGCGCAGAAGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATAGGTTTTAGCAAAGTAAAAGCAAGACAGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCACATATATAACCATATTCTTCTGTGAAATATTGCATTATTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCT]

[+] EMBL BX625615             [TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAGAGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAAGAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATTCGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCAGTAAAGGTGTGCGCAGAAGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATAGGTTTTAGCAAAGTAAAAGCAAGACAGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCACATATATAACCATATTCTTCTGTGAAATATTGCATTATTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCT]




>consensus_5374#0
TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAG
AGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGT
ACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAA
GAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACAT
ATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATT
CGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATGTATTTGATAGTTTT
GACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGA
AAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCAGTAAAGGTG
TGCGCAGAAGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGA
TAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATAGGTTTTAGCA
AAGTAAAAGCAAGACAGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCACATATATA
ACCATATTCTTCTGTGAAATATTGCATTATTTTCTATACTAAGCTAACACACTAGCTCAC
ATCAATTCT

consensusID : consensus_5374#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence

                              [GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGGACATGATCGATCTCATTCGAAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATATATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAGGGTGTGTGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAAGTAAAGGTGATAAATAAAGGCAAAATT]

[+] EMBL BX617263             [GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGGACATGATCGATCTCATTCGAAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATATATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAGGGTGTGTGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAA                           ]
[+] EMBL BM638722             [                                                                                                                                                                                                                                                                                                                                                                                 ccgCACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAAGTAAAGGTGATAAATAAAGGCAAAATT]




>consensus_5374#1
GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACATA
TGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGGACATGATCGATCTCATTCG
AAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATATATTTGATAGTTTTGA
CTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAA
ATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAGGGTGTG
TGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGAT
AGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAA
AGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAAC
GCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACA
CACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGA
ACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAAGT
AAAGGTGATAAATAAAGGCAAAATT

consensusID : consensus_5374#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAGATTAATGAAGGAAGGGCAAACGAAGGGCGGCGTCGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATCCGAAAAGGAAGAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAAGGTGTGCGCAGAGGTAGGTGCAATTTTTCGTA]

[+] EMBL BM654123             [CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAGATTAATGAAGGAAGGGCAAACGAAGGGCGGCGTCGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATCCGAAAAGGAAGAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAAGGTGTGCGCAGAGGTAGGTGCAATTTTTCGTA]




>consensus_5374#2
CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACG
TTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAGATTAATGAAGGAAGGGCA
AACGAAGGGCGGCGTCGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACAT
AACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATCCGAAAAGGAA
GAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTGATAGTTTTGA
CTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACAAAATTAAGAA
AATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAAGGTGT
GCGCAGAGGTAGGTGCAATTTTTCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5374#0      TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAG 60
consensus_5374#2      ------------------------------------------------------------
consensus_5374#1      ------------------------------------------------------------
                                                                                  

consensus_5374#0      AGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGT 120
consensus_5374#2      ---CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGT 57
consensus_5374#1      ------------------------------------------------------------
                                                                                  

consensus_5374#0      ACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAA 180
consensus_5374#2      ACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAA--GATTAATGAAGGAA 115
consensus_5374#1      ------------------------------------------------------------
                                                                                  

consensus_5374#0      GAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACAT 240
consensus_5374#2      GGGCAAACGAAGGG----CGGCGTCG-CATATACGAAAGTTGAGTAACGTTATTAAACAT 170
consensus_5374#1      -GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACAT 59
                        ****** *****    ******** ******* ******* ********** ******

consensus_5374#0      ATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATT 300
consensus_5374#2      ATGCATACATAACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATC 230
consensus_5374#1      ATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGG-ACATGATCGATCTCATT 118
                      ************ ************************** ** **************** 

consensus_5374#0      CGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATG--------TATTTG 352
consensus_5374#2      CGAAAAGGAAGAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTG 290
consensus_5374#1      CGAAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATA--------TATTTG 170
                      ******* **** ************ *****  ***** ******         ******

consensus_5374#0      ATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAA-GGATTGCCAAAACA 411
consensus_5374#2      ATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACA 350
consensus_5374#1      ATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAA-GGATTGCCAAAACA 229
                      ********************************************* **************

consensus_5374#0      AAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCA 471
consensus_5374#2      AAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCA 410
consensus_5374#1      AAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCA 289
                      ************************************** ************** ******

consensus_5374#0      GTAAAGGTGTGCGCAGAAG-AGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGT 530
consensus_5374#2      GCAAAGGTGTGCGCAGAGGTAGGTGCAATTTTTCGTA----------------------- 447
consensus_5374#1      GCAAGGGTGTGTGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGT 349
                      * ** ****** ***** * *****************                       

consensus_5374#0      TAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATA 590
consensus_5374#2      ------------------------------------------------------------
consensus_5374#1      TAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATA 409
                                                                                  

consensus_5374#0      GGTTTTAGCAAAGTAAAAGCAAGACAGCAACAGCAA------------AACAGGCACGCT 638
consensus_5374#2      ------------------------------------------------------------
consensus_5374#1      GGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCT 469
                                                                                  

consensus_5374#0      AGTAAGAAAACGCACATATATAACCATATTCTTCTGTGAAATATTGCATTATTTTCTATA 698
consensus_5374#2      ------------------------------------------------------------
consensus_5374#1      AGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATA 529
                                                                                  

consensus_5374#0      CTAAGCTAACACACTAGCTCACATCAATTCT----------------------------- 729
consensus_5374#2      ------------------------------------------------------------
consensus_5374#1      CTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCA 589
                                                                                  

consensus_5374#0      ------------------------------------------------------------
consensus_5374#2      ------------------------------------------------------------
consensus_5374#1      GAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTG 649
                                                                                  

consensus_5374#0      ------------------------------------
consensus_5374#2      ------------------------------------
consensus_5374#1      GCGAAATAAGTAAAGGTGATAAATAAAGGCAAAATT 685