These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence [AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCCTCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAGCCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTCAACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGGCGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGATTTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGA-GGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGAAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGGCCGTACTGAAGCTGTCCTG-CGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCCGTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGACATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCTTAGCTCGGGCC] [+] EMBL AL932544 [AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCCTCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAGCCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTCAACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGGCGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGATTTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGACGGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGGAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGG CGTACTGAAGCTGTCCTGCCGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGC ] [+] EMBL BX609506 [ AAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGATTTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGA GGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACGCAAACGATAATGGCGGCGGGTGAAGCGAAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGGCCGTACTGAAGCTGTCCTG CGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCCGTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGACATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCTTAGCTCGGGCC] [+] EMBL BX624273 [ GCGCAGCCAAGGTAAGCTGTAGCGA GGCGGCACCGGCCGCCCACGGCGGTCTGGTGCTCGCATGGCACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCGAAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGCTCCGACACGGCCGTACTGAAGCTGTCCTG CGCGCCGAACGGTATATTTGCGGCCGGGTTTTACGATGGCAGTGTTCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGCAACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATCGCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTCCTCCGTACAGAACTGNNGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGCCGACATTCTCGCCTGTGCNACCAGCCAGATCGTCATCTACNGGCTGGACGGTGTGG ] consensusID : consensus_5381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GCTCCGTTGAAGCCGATCGTGGGGACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCCCAACCTTCGAAGCGTATGAACGAAGCGAAAGCGGCCGGTACGGATCACAATTCGTACGAATTTCTCATCCGCAAATCGCGCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACGCAGCGCATGAAGGCGATCTTTAAGCGGCTAGATGTGCAAAGTTGGTCCTGCCGTACGCAGCATGCACCGACGTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAGGATCGAGTCATCGTAGTGAATATGAGCACGGAAGTCACGCACACGCTAATGCCCCAACGACAATCGATTTACGACAGCTCCAGCAACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCG] [+] EMBL BX605859 [GCTCCGTTGAAGCCGATCGTGGGGACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCCCAACCTTCGAAGCGTATGAACGAAGCGAAAGCGGCCGGTACGGATCACAATTCGTACGAATTTCTCATCCGCAAATCGCGCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACGCAGCGCATGAAGGCGATCTTTAAGCGGCTAGATGTGCAAAGTTGGTCCTGCCGTACGCAGCATGCACCGACGTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAGGATCGAGTCATCGTAGTGAATATGAGCACGGAAGTCACGCACACGCTAATGCCCCAACGACAATCGATTTACGACAGCTCCAGCAACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAGCACCATGGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5381#0 AATTGCCCCGAGGTGCAACTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTGCAG 60 consensus_5381#1 ------------------------------------------------------------ consensus_5381#0 CACCATGGTTCGCATCGTCTAATTAATCAATCCTTCCTGGAGCAGCACCACCCGACGCCC 120 consensus_5381#1 ------------------------------------------------------------ consensus_5381#0 TCACAGTCGCAACAGCCATCGTTATCATCGTTCCCGCATCAACTGAAGCCATCGAACGAG 180 consensus_5381#1 ------------------------------------------------------------ consensus_5381#0 CCGCTGCCGGCGCACGGGTTTGGTAATCACGCGCTGGCAGTCACGTCGCTGGAGTTCCTC 240 consensus_5381#1 ------------------------------------------------------------ consensus_5381#0 AACGCGCACGACGTCGGTGTGATAATGGCCGGGTACAGCGACAGCACGATACGATTGTGG 300 consensus_5381#1 ------------------------------------------------------------ consensus_5381#0 CGCCCGAAGGAGACGAGCGACGAAAACCAGCTGCTTTCGGCGTGGCACGGTTTGCTAGAT 360 consensus_5381#1 ------------------------------------------------------------ consensus_5381#0 TTCAATACATCAAGCGCAGCCAAGGTAAGCTGTAGCGAGGCGGCACCGGCCGCCCACGGC 420 consensus_5381#1 -------------------------------------GCTCCGTTGAAGCCGATCGTGGG 23 * * **** * ** consensus_5381#0 GGTCTGGTGC-TCGCATGGC--ACCAGCGCACACAAACGATAATGGCGGCGGGTGAAGCG 477 consensus_5381#1 GACTCAGTATATCGAATGGTCGGTCAGCTTCTTTGCCCAACCTTCGAAGCGTATGAA-CG 82 * ** *** **** **** * * * * *** **** ** consensus_5381#0 AAATACATACGCCTGTGGGATGCTGAGCGGGAGATGCGTATCTGTGATATTCCGAGCGGC 537 consensus_5381#1 AAGCGAAAGCGGCC--GGTACGGATCACAATTCGTACGAATTTCTCAT-CCGCAAATCGC 139 ** * ** * ** * * * * ** ** * * ** * * ** consensus_5381#0 TCCGACACGGCCGTACTGAAGC-TGTCCTGCGCGCCGAACGGTATATTTGCGGCCGGGTT 596 consensus_5381#1 GCTGGTTGCGCAACAAAGAGGTACGAGCGGAGGGGCGTACGCAGCGCATGAAGGCGATCT 199 * * ** * ** * * * * * * ** *** ** * ** * consensus_5381#0 TTACGATGGCAGTGTGCGCATATTCGATCGCCGCTGTCCGCCAGCCGAGACGCGCTGCGC 656 consensus_5381#1 TTAAG-CGGCTAGATGTGCAAAGTTGGTC-CTGCCGTACGC-AGC----ATGCACCG-AC 251 *** * *** ** *** * * * ** * ** ** *** *** * ** * * * consensus_5381#0 AACCATACGGGAGCACATTAACCCGGTGCTGGCGATCTGCCTGCGCGACGATTGCGAATC 716 consensus_5381#1 GTTCATCAAGCTAAATCCTTACGACGAACAAGTGGCTTTCGCATACAAGGATCGAGTCAT 311 *** * * * ** * * * * * * * * *** * * consensus_5381#0 GCTAGTGACCGCCGATGTGTCGGCTAGCGTACGGCTCTACGATATAAGGAAAGCGTACTC 776 consensus_5381#1 CGTAGTGAATATGAGCACGGAAGTCA-CGCACACGCTAATGCCCCAACGACAATCGATT- 369 ****** * * * ** ** * * ** ** * * * consensus_5381#0 CTCCGTACAGAACTGGAGCGCCGGGACGGACGTGTCGGCGATGGCGATACACACGAGCGC 836 consensus_5381#1 -TACG-ACAGCTCCAGCA-ACCTGTCCAGCAGCAGCACCAGCTCCGGTTACCACAGTCTG 426 * ** **** * * ** * * * * * * ** * *** * consensus_5381#0 CGACATTCTCGCCTGTGCAACCAGCCAGATCGTCATCTACGGGCTGGACGGTGTGGTGCT 896 consensus_5381#1 CAGCACCATGGTTCG--------------------------------------------- 441 * ** * * * consensus_5381#0 TAGCTCGGGCC 907 consensus_5381#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||