cluster # 5383

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Anopheles gambiae
cluster # 5383 cluster # 5383 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5383#0 length = 665 sequences # 3

consensus_5383#1 length = 638 sequences # 1

consensusID : consensus_5383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 665
fasta sequence

                              [CCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAA-GAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTATATATATTGAATATATATATATTACTATTATTCATATGAGTAATACTAATAACAATAGTACTATT]

[+] EMBL BX616792             [CCTGTTCGGCGATCGGTTTCCCATTCGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAA GAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGG                                                                      ]
[+] EMBL BX607022             [      CGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAA GAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTATATATATTGAATATATATATATTACTATTATTCATATGAGTAATACTAATAACAATAGTACTATT]
[+] EMBL AL932589             [          gccccgaggCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAACGAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAA                                                                                                                                                                                              ]




>consensus_5383#0
CCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGT
TATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGG
AGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAG
GGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAAC
GAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAAT
GTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTG
TGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCG
CAAAAGAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGT
GCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAA
GGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTA
TATATATTGAATATATATATATTACTATTATTCATATGAGTAATACTAATAACAATAGTA
CTATT

consensusID : consensus_5383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence

                              [CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACACCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCATCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTATGTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATGAGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTTGTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC]

[+] EMBL BM637014             [CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACACCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCATCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTATGTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATGAGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTTGTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC]




>consensus_5383#1
CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACA
CCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCA
TCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCT
GTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTAT
GTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATG
AGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAG
TAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTA
TATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTT
GTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAA
CACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATA
GCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5383#0      ------------------------------------------------------------
consensus_5383#1      CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACA 60
                                                                                  

consensus_5383#0      ------------------------------------------------------------
consensus_5383#1      CCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCA 120
                                                                                  

consensus_5383#0      ---------------------------------------------------------CCT 3
consensus_5383#1      TCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCT 180
                                                                               ***

consensus_5383#0      GTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTAT 63
consensus_5383#1      GTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTAT 240
                      ****************************************************** *****

consensus_5383#0      G----------------------------------------AGAGAGAGAGAGAGAGATG 83
consensus_5383#1      GTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATG 300
                      *                                        *******************

consensus_5383#0      TGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAG 143
consensus_5383#1      AGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAG 360
                       ********************* ********** **************************

consensus_5383#0      TAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTA 203
consensus_5383#1      TAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTA 420
                      ************************************************************

consensus_5383#0      TATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTT 263
consensus_5383#1      TATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTT 480
                      ********************************************* **************

consensus_5383#0      GTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAA 323
consensus_5383#1      GTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAA 540
                      ***************  ******** **********************************

consensus_5383#0      CACTCTAGGAAGGACATGCATGAATTGTATGTGCGTG--TGCGTCTGTGTGTGTGTCATA 381
consensus_5383#1      CACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATA 600
                      *************************************  ***** ***************

consensus_5383#0      GCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAAGAAAATCAAACAAATC 441
consensus_5383#1      GCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC---------------------- 638
                      ******************* ******************                      

consensus_5383#0      ATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGAT 501
consensus_5383#1      ------------------------------------------------------------
                                                                                  

consensus_5383#0      ACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCG 561
consensus_5383#1      ------------------------------------------------------------
                                                                                  

consensus_5383#0      TGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTATATATATTGAATATATATATA 621
consensus_5383#1      ------------------------------------------------------------
                                                                                  

consensus_5383#0      TTACTATTATTCATATGAGTAATACTAATAACAATAGTACTATT 665
consensus_5383#1      --------------------------------------------