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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence
[GCGTAAAACACACCGTATACGCCGCCGCCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCACGCCGTGAACTCTGTGCTCTGTTCTGTGCCTGTGCTGTCGGATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGCATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGCCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGCGGTGGACCATTTAACGCGCGAATGTAGCCACATCGTAACGCCGGATAAGTGCGAAACCGCCTACGAGACGGTCAAATGTTATTTCAATGCGCGCGACGAGGTGATCAAATTCTGCCACCTACTAGTGCTGGAGTGAATCGGCAGCACGTGACCAACGTTGCCAATGTGTTTGTTTTACCTTTCTATCTCACTTAATGTACAGTTTCAGCATTAGCGATACGTTTGCAGCTCCATGCTAGCGAAGGCAATATTGCTTTAGGTTTAACAGTAAAGGACAACCAACGGTACAGGACCCATGTGATTTGTGTTATAAGACTATACATTAATCAGCTATTAATCATTTCAGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AF437890 [GCGTAAAACACACCGTATACGCCGCCGCCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCACGCCGTGAACTCTGTGCTCTGTTCTGTGCCTGTGCTGTCGGATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGCATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGCCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGCGGTGGACCATTTAACGCGCGAATGTAGCCACATCGTAACGCCGGATAAGTGCGAAACCGCCTACGAGACGGTCAAATGTTATTTCAATGCGCGCGACGAGGTGATCAAATTCTGCCACCTACTAGTGCTGGAGTGAATCGGCAGCACGTGACCAACGTTGCCAATGTGTTTGTTTTACCTTTCTATCTCACTTAATGTACAGTTTCAGCATTAGCGATACGTTTGCAGCTCCATGCTAGCGAAGGCAATATTGCTTTAGGTTTAACAGTAAAGGACAACCAACGGTACAGGACCCATGTGATTTGTGTTATAAGACTATACATTAATCAGCTATTAATCATTTCAGAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[AGAATCGCCCGAGGTTAAGACAGCGTGTTTCCATNTGAACTANGCATGTGTAAAATGAACGAGAATCGCACCGTCTCGAACAGTTCGGTAAAGTGCACGANCGAACGAGGTTTCTCTAACAAANAGAACGACCAGGACTTTCTTGGAAGAAACTGACTACACCGAACGCGTTCGAACTATGTTCGATCTGTGTTCTGTTGGTGTATAAATCGTACCTACACAACTGAATTCATCGAACGCGTTCAAACGGATTAGTCACTTGTTCGCGAATGAACTGAACTGAATTGATTGCGCTCATCATGTNGATCCATATTTAAACTAATTNCTGTNTNACCAATCCTTGGAGTGTGTATAAGGGCATGGGGTACAATATACGCAGGAGACATTTTCTGCTCGTATTAGTANCNACATGCTAGTTTTCGGTCGGCTTGCGATGGATTGTGTTGACCAGACAGCCGAGTGTNCAACTGTTCTCANAACTTATTGGTNNAACCGCCGAATTACTAGTACTTGGCTACNAGTATGCGTCTATGGTGGNTAAATGNCACACAGATTNCACGAGCGTTCTTTTGCTAGACTAAATAACGTCTCGATGTAANACAGACGAAACGAANGAATCNGTCGCTTTCGCCGTACCGGGTCCCTTCNTGGGTGAGCGGACACCTTAANTTCGATGAGGTCCGGTGCACAACGGAATNCGGNTCTGGCCCATGCCTAATTTGAAACATCCAGATGCGGCGCTGTGNAGCTTGTTCCGTGGGANTGTCTCAAGTACAGGGGNAGGTAGNCAGGAATC]
[+] EMBL AL934491 [AGAATCGCCCGAGGTTAAGACAGCGTGTTTCCATNTGAACTANGCATGTGTAAAATGAACGAGAATCGCACCGTCTCGAACAGTTCGGTAAAGTGCACGANCGAACGAGGTTTCTCTAACAAANAGAACGACCAGGACTTTCTTGGAAGAAACTGACTACACCGAACGCGTTCGAACTATGTTCGATCTGTGTTCTGTTGGTGTATAAATCGTACCTACACAACTGAATTCATCGAACGCGTTCAAACGGATTAGTCACTTGTTCGCGAATGAACTGAACTGAATTGATTGCGCTCATCATGTNGATCCATATTTAAACTAATTNCTGTNTNACCAATCCTTGGAGTGTGTATAAGGGCATGGGGTACAATATACGCAGGAGACATTTTCTGCTCGTATTAGTANCNACATGCTAGTTTTCGGTCGGCTTGCGATGGATTGTGTTGACCAGACAGCCGAGTGTNCAACTGTTCTCANAACTTATTGGTNNAACCGCCGAATTACTAGTACTTGGCTACNAGTATGCGTCTATGGTGGNTAAATGNCACACAGATTNCACGAGCGTTCTTTTGCTAGACTAAATAACGTCTCGATGTAANACAGACGAAACGAANGAATCNGTCGCTTTCGCCGTACCGGGTCCCTTCNTGGGTGAGCGGACACCTTAANTTCGATGAGGTCCGGTGCACAACGGAATNCGGNTCTGGCCCATGCCTAATTTGAAACATCCAGATGCGGCGCTGTGNAGCTTGTTCCGTGGGANTGTCTCAAGTACAGGGGNAGGTAGNCAGGAATC]
consensusID : consensus_5390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[AATCGCCCGAGGTTACGCCGTCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCGTAGCGTGAAATCTGTGCTCTGTTCTGTGCCTGTGCTGTCGAATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGC]
[+] EMBL AL932683 [AATCGCCCGAGGTTACGCCGTCGCCGGAAGCGCACTTGTTCTCTCGCGTATTACATTGAAACGTTCCACGCCGTAGCGTGAAATCTGTGCTCTGTTCTGTGCCTGTGCTGTCGAATCGGATCATGCCGATGCCGTCGAACGAGCTGCGAAAGCTGCCGGAAGTGTGACTGCGTACGTGTGTGGAAGATGTGTGAATATTCGAATACGCGCAACAAGATGAGCAACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGGACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGAAGGCAGC]
consensusID : consensus_5390#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[GAGGAATAAATGTACACACTTTAAGCCGGTTTTCGGTGTTAGAGAAATTTTGGCAATCATTTTATCGCGTAGCATTGCGAGTAGGCATGTGTAAAATGAACGAGAATCGCACCGTTCGAACAGTTCGGTAAAGTGCACGAACGAACGAGGTTCTTAACAAAAAGAACGACCAGGACTTTTGGAAGAAACTGACTACACCGAACGCGTTCGAACGTTCCGTTCAGTGTTCGACGGCACACATAAATGTGCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAG]
[+] EMBL BX614457 [GAGGAATAAATGTACACACTTTAAGCCGGTTTTCGGTGTTAGAGAAATTTTGGCAATCATTTTATCGCGTAGCATTGCGAGTAGGCATGTGTAAAATGAACGAGAATCGCACCGTTCGAACAGTTCGGTAAAGTGCACGAACGAACGAGGTTCTTAACAAAAAGAACGACCAGGACTTTTGGAAGAAACTGACTACACCGAACGCGTTCGAACGTTCCGTTCAGTGTTCGACGGCACACATAAATGTGCCATTCGAAATACCGGACCGGTACAAAAAGCCGGCTAAAATGTTGCACGAAATTTGTATCGCCGAGTCGGGCGCCTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTACCGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5390#0 GCGTAAAACACACCGTATACGCCGCCGCCGC---CGGAAGCGCACTTGTTCTCTCGCGTA 57
consensus_5390#2 -------AATCGCCCGAGGTTACGCCGTCGC---CGGAAGCGCACTTGTTCTCTCGCGTA 50
consensus_5390#3 -------------------------GAGGAA---TAAATGTACACACTTTAAGCCGGTTT 32
consensus_5390#1 -----AGAATCGCCCGAGGTTAAGACAGCGTGTTTCCATNTGAACTANGCATGTGTAAAA 55
* **
consensus_5390#0 TTA-C----ATTGAAACGTTCCACGCCACGCCGTGAACTCTGTGCTCTGTTCTGTGCCTG 112
consensus_5390#2 TTA-C----ATTGAAACGTTCCACGCCGTAGCGTGAAATCTGTGCTCTGTTCTGTGCCTG 105
consensus_5390#3 TCGGT----GTTAGAGAAATTTTGGCAATCATTTTA---TCGCGTAGCATTGCGAGTAGG 85
consensus_5390#1 TGAACGAGAATCGCACCGTCTCGAACAGTTCGGTAAAGTGCACGANCGA--ACGAGGTTT 113
* * * * * * * * *
consensus_5390#0 TGCTGTCGGATCGGATCATGCCGATGCCGT-CGAACGAGCTGCGAAAGCTGCCGGAAGTG 171
consensus_5390#2 TGCTGTCGAATCGGATCATGCCGATGCCGT-CGAACGAGCTGCGAAAGCTGCCGGAAGTG 164
consensus_5390#3 CATGTGTAAAATGAACGAGAATCGCACCGTTCGAACAGTTCGGTAAAGTGCACGAACGAA 145
consensus_5390#1 CTCTAACAAANAGAACGACCAGGACTTTCTTGGAAGAAACTGACTACACCGAACGCGTTC 173
* * * * * *** * *
consensus_5390#0 TGACTGCGTACG-----TGTGTGGAAGATGTGTGAAT-ATTCGAATACG-CGCAACAAGA 224
consensus_5390#2 TGACTGCGTACG-----TGTGTGGAAGATGTGTGAAT-ATTCGAATACG-CGCAACAAGA 217
consensus_5390#3 CGAGGTTCTTAA-----CAAAAAGAACGACCAGGACT-TTTGGAAGAAA-CTGACTACAC 198
consensus_5390#1 GAACTATGTTCGATCTGTGTTCTGTTGGTGTATAAATCGTACCTACACAACTGAATTCAT 233
* * * * * * * * * *
consensus_5390#0 TGAGCA-ACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCA 283
consensus_5390#2 TGAGCA-ACCTGGTCGTCGTCCTCGTCCTGCTGACGATGTACATTGTGCTTTCGGCCCCA 276
consensus_5390#3 CGAACGCGTTCGAACGTTCCGTTCAGTGTTC-GACGGCACACATAAAT------GTGCCA 251
consensus_5390#1 CGAACGCGTTCAAACGGATTAGTCACTTGTTCGCGAATGAACTGAACTGAATTGATTGCG 293
** * ** ** * ** *
consensus_5390#0 TTCGAAATACCGGACCG-GTACAAA---AAGCCGGCTAAAATGTTGCACGAAATTTGCAT 339
consensus_5390#2 TTCGAAATACCGGACCG-GTACAAA---AAGCCGGCTAAAATGTTGCACGAAATTTGTAT 332
consensus_5390#3 TTCGAAATACCGGACCG-GTACAAA---AAGCCGGCTAAAATGTTGCACGAAATTTGTAT 307
consensus_5390#1 CTCATCATGTNGATCCATATTTAAACTAATTNCTGTNTNACCAATCCTTGGAGTGTGTAT 353
** ** * ** * *** * * * * * * * * * ** **
consensus_5390#0 CGCCGAGTCGGGCGC----CTCGGAGGAGCAGCTGCGCACCTGCCTCGATGGAACCGTAC 395
consensus_5390#2 CGCCGAGTCGGGCGC----CTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTAC 388
consensus_5390#3 CGCCGAGTCGGGCGC----CTCGGAGGAGCAGCTGCGCACCTGTCTCGATGGAACCGTAC 363
consensus_5390#1 AAGGGCATGGGGTACAATATACGCAGGAGACATTTTCTGCTCGTATTAGTANCNACATGC 413
* * *** * ** ***** * * * * * * * *
consensus_5390#0 CGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGG 455
consensus_5390#2 CGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAGATCGACGTGGTGG 448
consensus_5390#3 CGACAGCTCCGGCCGCCAAGTGCTACATCCACTGCCTGTTCGACAAG------------- 410
consensus_5390#1 TAGT--TTTCGGTCGGCTTGCGATGGATTG------TGTT-GACCAGACAGCCG-AGTGT 463
* *** ** * * * * ** **** *** **
consensus_5390#0 ACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGA 515
consensus_5390#2 ACGAGGCGACTGGGCGCATCCTGCTCGACCGACTGCTTTACATCATCCCGGACGACGTGA 508
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 NCAACTGTTCTCANAACTTATTGGTNNAACCGCCGAATTAC-TAGTACTTGGCTACNAGT 522
consensus_5390#0 AGGCAGCGGTGGACCATTTAACGCGCGAATGTAGCCACATCGTAACGCCGGATAAGTGCG 575
consensus_5390#2 AGGCAGC----------------------------------------------------- 515
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 ATGCGTCTATGGTGGNTAAATGNCACACAGATTNCACGAGCGTT-CTTTTGCTAGACTAA 581
consensus_5390#0 AAACCGCCTACGAGACGGTCAAATGTTATTTCAATGCGCGCGACGAGGTGATCAAATTCT 635
consensus_5390#2 ------------------------------------------------------------
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 ATAACGTCTCGATGTAANACAGACG--AAACGAANGAATCNGTCGCTTTCGCCGTACCGG 639
consensus_5390#0 GCCACCTACTAGTGCTGGAGTGAATCGGCAGCACGTGACCAACGTTGCCAATGTGTTTGT 695
consensus_5390#2 ------------------------------------------------------------
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 GTCCCTTCNTGGGTGAGCGGACACCTTAANTTCGATGAGGTCCGGTGCACAACGGAATNC 699
consensus_5390#0 TTTACCTTTCTATCTCACTTAATGTACAGTTTCAGCATTAGCGATACGTTTGCAGCTCCA 755
consensus_5390#2 ------------------------------------------------------------
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 GGNTCTGGCCCATGCC--TAATTTGAAACATCCAGATGCGGCGCTGTGNAGCTTGTTCCG 757
consensus_5390#0 TGCTAGCGAAGGCAATATTGCTTTAGGTTTAACAGTAAAGGACAACCAACGGTACAGGAC 815
consensus_5390#2 ------------------------------------------------------------
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 TGGGANTGTCTCAAGTACAGGGGNAGGTAGNCAGGAATC--------------------- 796
consensus_5390#0 CCATGTGATTTGTGTTATAAGACTATACATTAATCAGCTATTAATCATTTCAGAAAAAAA 875
consensus_5390#2 ------------------------------------------------------------
consensus_5390#3 ------------------------------------------------------------
consensus_5390#1 ------------------------------------------------------------
consensus_5390#0 AAAAAAAAAAAAA 888
consensus_5390#2 -------------
consensus_5390#3 -------------
consensus_5390#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||