These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [GCAAGAATCGGCACGATNNGTTAAAAACATATGAGTAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAAGTTAATAATCTTCCGTACAGCGTCGGCGCAGATGAATCCGTGTCGTTTACCCCGATTGTCCCCATAGTATGGCNCTTTCGGGTTGATTNNTCGNGAGTAATTATGGGNTGAATCGACGCGCACACACACACAGCATACTCGCATTTAGGTTCTTGATTTGATCGGTAGTGTGAATAACGTTTAATGAAGGCAGACCAGGCGAAGCTACAAAAAAGGGCGNAAGCGCGCGTAAACGCGTTCGTTTTACATAAAACATTGCCCACAGCACACACANCACTTACAATCACAGATTCGCCGCTAGAAACACGTNACACGAGTCATTAAGGGAAAACGCTTTGGCGCAGNNGACNAACGTTNGGGGTTCGGGAGGGGAACNTNAACTTTTCAGCAAAACAAGAAGCAGCANCGGGGAAACACGAAACAGACGGANAAAAAGCGANCGGGGANAAAAGGAAATGACCAGGGGANGGGTANAGGGAACAGACGAAAANGAGTTGGGCCGAAAAGGCNTTGGAAACCCGGGGCCCNAAGAAAGNACAGCCCCGTCGTCNAGNTTTGNACCAAAACCAGGGTNGGGGCCCCGCA] [+] EMBL BX468109 [GCAAGAATCGGCACGATNNGTTAAAAACATATGAGTAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAAGTTAATAATCTTCCGTACAGCGTCGGCGCAGATGAATCCGTGTCGTTTACCCCGATTGTCCCCATAGTATGGCNCTTTCGGGTTGATTNNTCGNGAGTAATTATGGGNTGAATCGACGCGCACACACACACAGCATACTCGCATTTAGGTTCTTGATTTGATCGGTAGTGTGAATAACGTTTAATGAAGGCAGACCAGGCGAAGCTACAAAAAAGGGCGNAAGCGCGCGTAAACGCGTTCGTTTTACATAAAACATTGCCCACAGCACACACANCACTTACAATCACAGATTCGCCGCTAGAAACACGTNACACGAGTCATTAAGGGAAAACGCTTTGGCGCAGNNGACNAACGTTNGGGGTTCGGGAGGGGAACNTNAACTTTTCAGCAAAACAAGAAGCAGCANCGGGGAAACACGAAACAGACGGANAAAAAGCGANCGGGGANAAAAGGAAATGACCAGGGGANGGGTANAGGGAACAGACGAAAANGAGTTGGGCCGAAAAGGCNTTGGAAACCCGGGGCCCNAAGAAAGNACAGCCCCGTCGTCNAGNTTTGNACCAAAACCAGGGTNGGGGCCCCGCA] consensusID : consensus_5394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TCGCCCCGAGGTNAGTGCAAGGTAGAAAAGTAAACAAACAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAACGATACATTCCCCAAATGGTAGTGCAATGGTGGTGGTGGAGGTGAAAATCTACAAGGCGTATAGACGAGCGTAATTATAGCATAAAGCGCCAGTAGTAATATTCAATGGGTTAAGGACAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAAACACAAGGCGAAGCAAAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAATTAATAATCTTCCGTACAGCTCGGCGCAGATGAATCCGTTCGTTTANCCCATTGTCCCCATAGTATGGCTTTCGGGTGATGGATTNATCGG] [+] EMBL AL932726 [TCGCCCCGAGGTNAGTGCAAGGTAGAAAAGTAAACAAACAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAACGATACATTCCCCAAATGGTAGTGCAATGGTGGTGGTGGAGGTGAAAATCTACAAGGCGTATAGACGAGCGTAATTATAGCATAAAGCGCCAGTAGTAATATTCAATGGGTTAAGGACAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAAACACAAGGCGAAGCAAAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATGCAATTAATAATCTTCCGTACAGCTCGGCGCAGATGAATCCGTTCGTTTANCCCATTGTCCCCATAGTATGGCTTTCGGGTGATGGATTNATCGG] consensusID : consensus_5394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCGAGCAAATGAAACGCAATAACTTAGTTGTAAACAATATCGATAAACTACCTAGACTACCGTAAAGCAACAAAACACATACACACAAAACCAACACATGCTGACACACATACAGAACACCGATTTACATTAACGCAAGTTCATTAGTACATGAATGCCAAATTGTAAAGATTTTAATAACAGCCTTTTAAAGAAATCGATTATAAAGCAAAACAAAAACAAAAAAGTATATATATTATACATATATTGAGCTAACAGCAAGTTGCTGCAATATAGGGGGGGGTGGATGTTATTGGATGGGGGGGGGGGGAAGGAGACGGTTACTGTGGAACTAAACAGAGGAGAAGTAACACACTGCATTTACATTATACGGGCGTAAGAGTGAGAGAAGTGCAAAGGTAGAAAAGTAAAACAAACAAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAAGATACA] [+] EMBL BM649590 [CCGAGCAAATGAAACGCAATAACTTAGTTGTAAACAATATCGATAAACTACCTAGACTACCGTAAAGCAACAAAACACATACACACAAAACCAACACATGCTGACACACATACAGAACACCGATTTACATTAACGCAAGTTCATTAGTACATGAATGCCAAATTGTAAAGATTTTAATAACAGCCTTTTAAAGAAATCGATTATAAAGCAAAACAAAAACAAAAAAGTATATATATTATACATATATTGAGCTAACAGCAAGTTGCTGCAATATAGGGGGGGGTGGATGTTATTGGATGGGGGGGGGGGGAAGGAGACGGTTACTGTGGAACTAAACAGAGGAGAAGTAACACACTGCATTTACATTATACGGGCGTAAGAGTGAGAGAAGTGCAAAGGTAGAAAAGTAAAACAAACAAACAAAAAAAGAACAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAAGACGGGAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAAGATACA] consensusID : consensus_5394#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [CGACCCACGCGTCCGCAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAACACAAGGCGAAGCAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATG] [+] EMBL BM599017 [CGACCCACGCGTCCGCAAGACGTAAAACGGAAGGGTGAGAGATAGCGATAAAAAACACAAGGCGAAGCAGAGTTAGAGAGATATGCAACATTCTGAGGTTATCCGTCCGCGAATATTTACATTAGCCATTACATACAAACGATTAAAAAACATATGAGTAAAGAAACCAAAGCTGAACGTAAAAAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGCAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5394#1 -------TCGCCCCGAGGTNAGTGCAAGGTA-GAAAAGTAAACAAACAACAAAAAAAGAA 52 consensus_5394#3 ------------------------------------------------------------ consensus_5394#0 GCAAGAATCGGCACGATNNGTTAAAAACATATGAGTAAGAAACCAAAGCTGAACGTAAAA 60 consensus_5394#2 ------------------------------------------------CCGAGCAAATGA 12 consensus_5394#1 CAAGCAAACAAACATACACAAACGAAATCAAATGCCGCATGTTCTGGCCTCTGATTAGCG 112 consensus_5394#3 ------------------------------------------------------------ consensus_5394#0 AAAAACATTAACTATGAAAACGCTCCCCCGAATATATCATTCCTCTTCTCCCTTCCACCC 120 consensus_5394#2 AACGCAATAACTTAGTTGTAAACAATATCGA---TAAACTACCTAGACTACCGTAAAGCA 69 consensus_5394#1 CGTGGCCACATTAAAAAAAAAGACGGGAAATGACGGT----AATGTAGAGAAATTGGCGA 168 consensus_5394#3 ------------------------------------------------------------ consensus_5394#0 CCTTACTTCATCGAAACGCGCGTTTGCAAATGCAAGTTAATAATCTTCCGTACAGCGTCG 180 consensus_5394#2 ACAAAACACATACACACA-AAACCAACACATGCTGAC------ACACATACAGAACACCG 122 consensus_5394#1 ATTTGTGTGTATGTACTATGCGCAACGATACATTCCCCAAATGGTAGTGCAATGGTGGTG 228 consensus_5394#3 ------------------------------------------------------------ consensus_5394#0 GCGCAGATGAATCCGTGTCGTTTACCCCGATTGTCCCCATAGTATGGCNCTTTCGGGTTG 240 consensus_5394#2 ATTTACATTAACGCAAGTTCATTAGTACATGAATGCCAAATTGTAAAGATTTTAATAACA 182 consensus_5394#1 GTGGAG-GTGAAAATCTACAAGGCGTATAGACGAGCGTAATTATAGCATAAAGCGCCAGT 287 consensus_5394#3 ------------------------------------------------------------ consensus_5394#0 ATTNNTCGNGAGTAATTATGGGNTGAATCGACGCGCACACACACACAGCATACTCGCATT 300 consensus_5394#2 GCCTTTTAAAGAAATCGATTATAAAGCAAAACA-----------AAAACAAAAAAGTATA 231 consensus_5394#1 AGTAAT----ATTCAATGGGTTAAGGACAAGACG-TAAAACGGAAG--GGTGAGAGATAG 340 consensus_5394#3 -----C----GACCCACGCGTCCG---CAAGACG-TAAAACGGAAG--GGTGAGAGATAG 45 consensus_5394#0 TAGGTTCTTGATTTGATCGGTAGTGTGAATAACG-TTTAATGAAGGCAGACCAGGCGAAG 359 consensus_5394#2 TATATTATACATATATTGAGCTAACAGCAAGTTGCTGCAATATAGG--GGGGGGTGGATG 289 * * * * ** * * * * * consensus_5394#1 CGATAAAAAAA--CACAAG-GCGAAGCAAAGAGTTAGAGAGATATGCAACATT-CTGAGG 396 consensus_5394#3 CGATAAAAAA---CACAAG-GCGAAGCA--GAGTTAGAGAGATATGCAACATT-CTGAGG 98 consensus_5394#0 CTACAAAAAAGGGCGNAAGCGCGCGTAAACGCGTTCGTTTTACATAAAACATTGCCCACA 419 consensus_5394#2 TTATTGGATGG--GGGGGGGGGGAAGGAGACGGTTACTGTGGAACTAAACAGAGGAGAAG 347 * * * * * * *** * **** * consensus_5394#1 TTATCCGT-CCGCGAATATTTACA--TTAGCCATTACA-TACAAACGATTAAAAAACATA 452 consensus_5394#3 TTATCCGT-CCGCGAATATTTACA--TTAGCCATTACA-TACAAACGATTAAAAAACATA 154 consensus_5394#0 GCACACACANCACTTACAATCACAGATTCGCCGCTAGA-AACACGTNACACGAGTCATTA 478 consensus_5394#2 TAACACACTGCATTTACA-TTATA---CGGGCGTAAGAGTGAGAGAAGTGCAAAGGTAGA 403 * * * * * * * * * * * * * * consensus_5394#1 TGAGTAAAGAAACCAAAGCTGAACGTAAAAAA-AAACATTAACTATGAAAACGCT--CCC 509 consensus_5394#3 TGAGTAAAGAAACCAAAGCTGAACGTAAAAAA-AA-CATTAACTATGAAAACGCT--CCC 210 consensus_5394#0 AGGGAAAACGCTTTGGCGCAGNNGACNAACGTTNGGGGTTCGGGAGGGGAACNTNAACTT 538 consensus_5394#2 AAAGTAAAACAAACAAACAAAAAAAGAACAAGCAAACAAACA-TACACAAACGAA----A 458 * *** * * *** consensus_5394#1 CCGAATATATCAT-CCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGC 568 consensus_5394#3 CCGAATATATCATTCCTCTTCTCCCTTCCACCCCCTTACTTCATCGAAACGCGCGTTTGC 270 consensus_5394#0 TTCAGCAAAACAAGAAGCAGCANCGGGGAAACACGAAACAGACGGANAAAAAGCGANCGG 598 consensus_5394#2 TCAAATGCCGCATGTTCTGGCCTCTGATTAGCGCGTGGCCACATTAAAAAAAAAAGACGG 518 * ** * * * * * * ** * consensus_5394#1 AAATGCAATTAATAATCTTCCGTACAGCTCGGCG---CAGATGAATCCGTTCGTTTANCC 625 consensus_5394#3 AAATG------------------------------------------------------- 275 consensus_5394#0 GGANAAAAGGAAATGACCAGGGGANGGGTANAGGGAACAGACGAAAANGAGTTGGGCCGA 658 consensus_5394#2 GAAATGACGGTAATGTAGAGAAATTGGCGAATTTGTGTGTATGTACTATGCGCAAGATAC 578 * consensus_5394#1 CATTGTCCCCATAGTATGGCTTTCGGGTGATGGATTNATCGG------------------ 667 consensus_5394#3 ------------------------------------------------------------ consensus_5394#0 AAAGGCNTTGGAAACCCGGGGCCCNAAGAAAGNACAGCCCCGTCGTCNAGNTTTGNACCA 718 consensus_5394#2 A----------------------------------------------------------- 579 consensus_5394#1 ---------------------- consensus_5394#3 ---------------------- consensus_5394#0 AAACCAGGGTNGGGGCCCCGCA 740 consensus_5394#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||