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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1253 fasta sequence
[AATAGCATAATCCACGTAATGTACAAGCTGTTGCTTCCTTCCTTTCTCGTTACAAAACACACACACACACACATCCCTACACACCCCAACGCAGATGAACACAGCTTACCATACACACACAGACCGTTACTGTCCTTTTGTTTTCCACTTTCACCCGCCACCGGGGTGAGTGCAAGAAGCGGTGCGCGTTTGACAATAACAAAAAAAAACAATACCACCATCAAATTCGGGCTACGAATTCCTGCAGTGAAATGCTGTACAGGAAGCCAGCTTTGAATGGAGTACCCCAATTGAATGTGTTTCACGCTCAATTGGAGGGAAAAGCGACCCATCGGAAGCGGATTGTCAAACGTACGTAGCAAATGTTTCTTGCATTTTCCCACCGGCAATACAGGAAAGGATTGTGCGGATGCGTTTTGTTTTCCGTTACTCATCCGTTTCCTTACCCGAACCTTGTGTCCTTTTTCCCACATCCTCCCACACAGACACACACACGCACACACACATCCTCGGGTTGCTTCCGATACATGCACAGCTACACACATTCCCAGGAGCCGAAAGGGGTAGAGCCGATAGACAGAGAGCAATGATGATACGGACAGCGAGAGAGAGAGAAAGAGAGCGCCACAGAGAGTTTTTCATGCAGTTACGATCCAAACGATG-TTTTTTCCAAGAATCTCTCCTTTAGCGTAACGTTTTTTCCATCATCATATACCTCCTACATACATAGGGTATTATTAAACAAAACAAAAAAAGAGTTAAGCAAGAAGAAAGCAAAAACAAATACAACAAAAAAAACAAAGAAAAAAAAACGAACAAAAACCTACGCGATTATAGCGAAACAAAACAACAACAACAAAGCAACACAAAACCCTTCCAATGTGCTTCCTTCTTAATTTTCTTTCCTTCCGTTACGGGGATCGTTCCGTTGTAATTGAATGTTTAGAGCATAGTACAATGATGTTCTGCTTCCGTCTCATTTTTTTTCAACCCTTTCTTTCTCTCTCACTCTCACACGCGCACACCGACGCATTTTATTTTTCGCCCTACCGGGTGCGGGTTTCTTTGTTTACATGCAAAACACCGTGTTTAGAAGATGATTATTTCCGATCTAGTTATTTTTTTTGGTGTGTATTATTACAAATAATTTTATTATTATTATTATTATTCTAATTGGAACGCAAAAAAAAGGAACCGTTCTGATTTACATTACACTTTATGTGATCGAGAGTTGAACCCGATCACAGCTCGGG]
[+] EMBL BX618029 [AATAGCATAATCCACGTAATGTACAAGCTGTTGCTTCCTTCCTTTCTCGTTACAAAACACACACACACACACATCCCTACACACCCCAACGCAGATGAACACAGCTTACCATACACACACAGACCGTTACTGTCCTTTTGTTTTCCACTTTCACCCGCCACCGGGGTGAGTGCAAGAAGCGGTGCGCGTTTGACAATAACAAAAAAAAACAATACCACCATCAAATTCGGGCTACGAATTCCTGCAGTGAAATGCTGTACAGGAAGCCAGCTTTGAATGGAGTACCCCAATTGAATGTGTTTCACGCTCAATTGGAGGGAAAAGCGACCCATCGGAAGCGGATTGTCAAACGTACGTAGCAAATGTTTCTTGCATTTTCCCACCGGCAATACAGGAAAGGATTGTGCGGATGCGTTTTGTTTTCCGTTACTCATCCGTTTCCTTACCCGAACCTTGTGTCCTTTTTCCCACATCCTCCCACACAGACACACACACGCACACACACATCCTCGGGTTGCTTCCGATACATGCACAGCTACACACATTCCCAGGAGCCGAAAGGGGTAGAGCCGATAGACAGAGAGCAATGATGATACGGACAGCGAGAGAGAGAGAAAGAGAGCGCCACAGAGAGTTTTTCATGCAGTTACGATCCAAACGATG TTTTTTCCAAGAATCTCTCCTTTAGCG ]
[+] EMBL BM643986 [ ccgGAGAGAAAGAGAGCGCCACAGAGAGTTTTTCATGCAGTTACGATCCAAACGATGTTTTTTTCCAAGAATCTCTCCTTTAGCGTAACGTTTTTTCCATCATCATATACCTCCTACATACATAGGGTATTATTAAACAAAACAAAAAAAGAGTTAAGCAAGAAGAAAGCAAAAACAAATACAACAAAAAAAACAAAGAAAAAAAAACGAACAAAAACCTACGCGATTATAGCGAAACAAAACAACAACAACAAAGCAACACAAAACCCTTCCAATGTGCTTCCTTCTTAATTTTCTTTCCTTCCGTTACGGGGATCGTTCCGTTGTAATTGAATGTTTAGAGCATAGTACAATGATGTTCTGCTTCCGTCTCATTTTTTTTCAACCCTTTCTTTCTCTCTCACTCTCACACGCGCACACCGACGCATTTTATTTTTCGCCCTACCGGGTGCGGGTTTCTTTGTTTACATGCAAAACACCGTGTTTAGAAGATGATTATTTCCGATCTAGTTATTTTTTTTGGTGTGTATTATTACAAATAATTTTATTATTATTATTATTATTCTAATTGGAACGCAAAAAAAAGGAACCGTTCTGATTTACATTACACTTTATGTGATCGAGAGTTGAACCCGATCACAGCTCGGG]
consensusID : consensus_5400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[CACCAACTCAACTAAGTGGTGGTAAAATGAGTATACGATTTTAATGCATAACAGCTACGAAAAAGAAGAAAAAACGAAGCGACACAAGTGTGCGCCGATATAAAGCTAACTAATTCGAGTATTAAGCTTTATGTATCTGTTTTTTTCTGGTTTGTTTTTTTTTATTAATTATTACACGTTTACTTATTACCGAACGGTAGAGTATTTTAACCGCAAGGGGCCTAGGGAATACGCAAACACAAATTATAATGGCCGATAAGTATGATAAGCGCGTAATGTGTAAGTGCAAGAAAATTACCAGAATAGTTTAAAAAAAAGAGGGTAGAGCCGATAGACAGAGAGCAATGATGATACGGACAGCGAGAGAGAGAGAGAAAGAAAGCGCCACAGAGAGTTTTTCATGCAGTTACGATCCAAACGATGTTTTTTCCAAGAATCTCTCCTTTAGCGTAACGTTTTTTCCATCATCATATACCTCCTACATACATAGGGTATT]
[+] EMBL BX620387 [CACCAACTCAACTAAGTGGTGGTAAAATGAGTATACGATTTTAATGCATAACAGCTACGAAAAAGAAGAAAAAACGAAGCGACACAAGTGTGCGCCGATATAAAGCTAACTAATTCGAGTATTAAGCTTTATGTATCTGTTTTTTTCTGGTTTGTTTTTTTTTATTAATTATTACACGTTTACTTATTACCGAACGGTAGAGTATTTTAACCGCAAGGGGCCTAGGGAATACGCAAACACAAATTATAATGGCCGATAAGTATGATAAGCGCGTAATGTGTAAGTGCAAGAAAATTACCAGAATAGTTTAAAAAAAAGAGGGTAGAGCCGATAGACAGAGAGCAATGATGATACGGACAGCGAGAGAGAGAGAGAAAGAAAGCGCCACAGAGAGTTTTTCATGCAGTTACGATCCAAACGATGTTTTTTCCAAGAATCTCTCCTTTAGCGTAACGTTTTTTCCATCATCATATACCTCCTACATACATAGGGTATT]
consensusID : consensus_5400#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[TCGCCCGAGGCAAGAGAGTTTCATGCAGTTACGATCCAAACGATGTTTTTTCCAAGAATCTCTCCTTTACGTAACGTTTTTTCCATCATCATATACCTCCTACATACATAGGGTATTATTAAACAAAACAAAAAAAGAGTTAAGCAAGAAGAAAGCAAAAACAAATACAACAAAAAAAACAAAGAAAAAAAAACGAACAAAAACCTACGCGATTATAGCGAAACAAAACAACAACAACAAAGCAACACAAAACCCTTCCAATGTGCTTCCTTCTTAATTTTCTTTCCTTCCGTTACGGGGATCGTTCCGTTGTAATTGAATGTTTAGAGCATAGTACAATGATGTTCTGCTTCCGTCTCATTTTTTTTCAACCCTTTCTTTCTCTCTCACTCTCACACGCGCACACCGACGCATTTTATTTTTCGCCCTACCGGGTGCGGGTTTCTTTGTTTACATGCAAAACACCGTGTTTAG]
[+] EMBL AL932821 [TCGCCCGAGGCAAGAGAGTTTCATGCAGTTACGATCCAAACGATGTTTTTTCCAAGAATCTCTCCTTTACGTAACGTTTTTTCCATCATCATATACCTCCTACATACATAGGGTATTATTAAACAAAACAAAAAAAGAGTTAAGCAAGAAGAAAGCAAAAACAAATACAACAAAAAAAACAAAGAAAAAAAAACGAACAAAAACCTACGCGATTATAGCGAAACAAAACAACAACAACAAAGCAACACAAAACCCTTCCAATGTGCTTCCTTCTTAATTTTCTTTCCTTCCGTTACGGGGATCGTTCCGTTGTAATTGAATGTTTAGAGCATAGTACAATGATGTTCTGCTTCCGTCTCATTTTTTTTCAACCCTTTCTTTCTCTCTCACTCTCACACGCGCACACCGACGCATTTTATTTTTCGCCCTACCGGGTGCGGGTTTCTTTGTTTACATGCAAAACACCGTGTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5400#0 AATAGCATAATCCACGTAATGTACAAGCTGTTGCTTCCTTCCTTTCTCGTTACAAAACAC 60
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 ACACACACACACATCCCTACACACCCCAACGCAGATGAACACAGCTTACCATACACACAC 120
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 AGACCGTTACTGTCCTTTTGTTTTCCACTTTCACCCGCCACCGGGGTGAGTGCAAGAAGC 180
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 GGTGCGCGTTTGACAATAACAAAAAAAAACAATACCACCATCAAATTCGGGCTACGAATT 240
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 CCTGCAGTGAAATGCTGTACAGGAAGCCAGCTTTGAATGGAGTACCCCAATTGAATGTGT 300
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 TTCACGCTCAATTGGAGGGAAAAGCGACCCATCGGAAGCGGATTGTCAAACGTACGTAGC 360
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 AAATGTTTCTTGCATTTTCCCACCGGCAATACAGGAAAGGATTGTGCGGATGCGTTTTGT 420
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 TTTCCGTTACTCATCCGTTTCCTTACCCGAACCTTGTGTCCTTTTTCCCACATCCTCCCA 480
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 CACAGACACACACACGCACACACACATCCTCGGGTTGCTTCCGATACATGCACAGCTACA 540
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 CACATTCCCAGGAGCCGAAAGGGGTAGAGCCGATAGACAGAGAGCAATGATGATACGGAC 600
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ---------------CACCAACTCAACTAAGTGGTGGTAAAATGAGTATACGATTTTAAT 45
consensus_5400#0 AGCGAGAGAGAGAGAAAGAGAGCGCCACAGAGAGTTTTTCATGCA-GTTACGATCCAAAC 659
consensus_5400#2 -----------------TCGCCCGAGGCA-AGAGAGTTTCATGCA-GTTACGATCCAAAC 41
consensus_5400#1 GCATAACAGCTACGAAAAAGAAGAAAAAACGAAGCGACACAAGTGTGCGCCGATATAAA- 104
* * ** ** * * **** ***
consensus_5400#0 GATGTTTTTTCCAAGAATCTCTCCTTTAGCGTAACGTTTTTTCCATCATCATATACCTCC 719
consensus_5400#2 GATGTTTTTTCCAAGAATCTCTCCTTTA-CGTAACGTTTTTTCCATCATCATATACCTCC 100
consensus_5400#1 GCTAACTAATTCGAGTATTAAGCTTTATGTATCTGTTTTTTTCTGGTTTGTTTTTTTTTA 164
* * * * * ** ** * ** * ******* * * * *
consensus_5400#0 TACATACATAGGGTATTATTAA--ACAAAACAAAAAAAGAGTTAAGCAAGAAGAAAGCAA 777
consensus_5400#2 TACATACATAGGGTATTATTAA--ACAAAACAAAAAAAGAGTTAAGCAAGAAGAAAGCAA 158
consensus_5400#1 TTAATTATTACACGTTTACTTATTACCGAACGGTAGAGTATTTTAACCGCAAGGGGCCTA 224
* ** ** *** * * ** *** * * * ** * * *** * *
consensus_5400#0 AAACAAATACAA-CAAAAAAAACAAAGAAAAAAAAACGAACAAAAACCTACGCGATTATA 836
consensus_5400#2 AAACAAATACAA-CAAAAAAAACAAAGAAAAAAAAACGAACAAAAACCTACGCGATTATA 217
consensus_5400#1 GGGAATACGCAAACACAAATTATAATGGCCGATAAGTATG-ATAAGCGCGTAATGTGTAA 283
* * *** ** *** * ** * * ** * ** * * *
consensus_5400#0 GCGAAACAAAACAACAACAACAAAGCAACACAAAACCCTTCCAATGTGCTTCCTTCTTAA 896
consensus_5400#2 GCGAAACAAAACAACAACAACAAAGCAACACAAAACCCTTCCAATGTGCTTCCTTCTTAA 277
consensus_5400#1 GTGCAAGAAAATTACCAGAATAGTTTAAAAAAAAG-------AGGGTAGAGCCGA-TAGA 335
* * ** **** ** * ** * ** * *** * ** ** * *
consensus_5400#0 TTTTCTTTCCTTCCGTTACGGGGATCGTTCCGTTGTAATTGAATGTTTAGAGCATAGTAC 956
consensus_5400#2 TTTTCTTTCCTTCCGTTACGGGGATCGTTCCGTTGTAATTGAATGTTTAGAGCATAGTAC 337
consensus_5400#1 CAGAGAGCAATGATGATACGGACAGCG----------AGAGAGAGAGAGAAAGAAAGCGC 385
* * ***** * ** * ** * * * ** *
consensus_5400#0 AATGATGTTCTGCTTCCGTCTCATTTTTTTTCAACCCTTTCTTTCTCTCTCACTCTCACA 1016
consensus_5400#2 AATGATGTTCTGCTTCCGTCTCATTTTTTTTCAACCCTTTCTTTCTCTCTCACTCTCACA 397
consensus_5400#1 CACAGAGAGTT--TTTCATGCAGTTACGATCCAAACGATGTTTTTTCCAAGAATCTCTC- 442
* * * ** * * ** * *** * * *** ** * **** *
consensus_5400#0 CGCGCACACCGACGCATTTTATTTTTCGCCCTACCGGGTGCGGGTTTCTTTGTTTACATG 1076
consensus_5400#2 CGCGCACACCGACGCATTTTATTTTTCGCCCTACCGGGTGCGGGTTTCTTTGTTTACATG 457
consensus_5400#1 ------CTTTAGCGTAACGTTTTTTCCATC--ATCATATAC-----CTCCTACATACATA 489
* ** * * **** * * * * * * * *****
consensus_5400#0 CAAAACACCGTGTTTAGAAGATGATTATTTCCGATCTAGTTATTTTTTTTGGTGTGTATT 1136
consensus_5400#2 CAAAACACCGTGTTTAG------------------------------------------- 474
consensus_5400#1 GGGTATT----------------------------------------------------- 496
*
consensus_5400#0 ATTACAAATAATTTTATTATTATTATTATTATTCTAATTGGAACGCAAAAAAAAGGAACC 1196
consensus_5400#2 ------------------------------------------------------------
consensus_5400#1 ------------------------------------------------------------
consensus_5400#0 GTTCTGATTTACATTACACTTTATGTGATCGAGAGTTGAACCCGATCACAGCTCGGG 1253
consensus_5400#2 ---------------------------------------------------------
consensus_5400#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||