These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1013 fasta sequence [CCGAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATC-GACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAAGAAGCGGAAGTAACGAAACAAACGAA-CAAGATCCTCGTCGAGAACATACTACCGACGCATGTGGGCCCAACACTCCTACACTCAACCTCGCGCCACGCCTGNTACCCACCACCGCACGCTNCCTACNNACCGCACGGGAGCTACCGCAACAACGTGGCCCGCTTAACTGCTCTCGNCAGCCACTCAGCCAAGCATGGGAGGGTCAACCACGGAGCANTTTCGGGTCGAGAACGACGCACANGCAAGCCGCTGCCTTGAAACAGCGGCTGCNTTCTGCAACACCCNGCACGCACTCCAACTCCTGCCAGCAACCCTCTCCGCACCGGCCAGGCCCGAGCGTTTGGCCACGCTCAACCNCTCTCGTGGCAACCNGCGCTGCTTTACTTCCCTTGCACACGCTGCTTGCGCACTGGACAGGACTCTTAAACACTGACTTGGGAACCAGAGACCCTTGTGTCAACACCNGCATTAAGCCNACCTTGCGGGCCCGGGTACCCCGTGCCAGCGGCACANACNATAGGCGCGAAGCATNCNCCCGCATGAANGGACAACCGCAGGTCATGACCGCACGTTCTCCAACTCCGGCATTCCCCTTCTGCACTCATCCAAGNGTAACGTGAGCACATTATCGGCCGGACCACTTCCGCGACATGNA] [+] EMBL BM578701 [CCGAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATC GACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAAGAAGCGGAAGTAACGAAACAAACGAA CAAGATCCTCGTCGAGAACATACTACCGACGCATGTGGGCC ] [+] EMBL AL933181 [ aggttATTGGATTGATCAGA AGT CGAGTACATTGCGCGGACNGATTATAATTGGAAGCAACAGGTCCTGAAGCAAAAGGAGGAAGCCGAAGTAACGAAACAAACGAAGCAAGATCCTCGTCGAGAACATACTGCCGACGCATGTGGCCGCAACACTCCTACACTCAACCTCGCGCCACGCCTGNTACCCACCACCGCACGCTNCCTACNNACCGCACGGGAGCTACCGCAACAACGTGGCCCGCTTAACTGCTCTCGNCAGCCACTCAGCCAAGCATGGGAGGGTCAACCACGGAGCANTTTCGGGTCGAGAACGACGCACANGCAAGCCGCTGCCTTGAAACAGCGGCTGCNTTCTGCAACACCCNGCACGCACTCCAACTCCTGCCAGCAACCCTCTCCGCACCGGCCAGGCCCGAGCGTTTGGCCACGCTCAACCNCTCTCGTGGCAACCNGCGCTGCTTTACTTCCCTTGCACACGCTGCTTGCGCACTGGACAGGACTCTTAAACACTGACTTGGGAACCAGAGACCCTTGTGTCAACACCNGCATTAAGCCNACCTTGCGGGCCCGGGTACCCCGTGCCAGCGGCACANACNATAGGCGCGAAGCATNCNCCCGCATGAANGGACAACCGCAGGTCATGACCGCACGTTCTCCAACTCCGGCATTCCCCTTCTGCACTCATCCAAGNGTAACGTGAGCACATTATCGGCCGGACCACTTCCGCGACATGNA] consensusID : consensus_5410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 849 fasta sequence [GCAGATTCGGCACGATGGATACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTTGATCCAAAGGTCTCTCATCTCATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAGGAAGCCGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTGCCGACGCATGTGGCCGAAATCTACATCAATCGGCAGCTGAAAAACGAGTTCTACAACGAGGAGTACGAAAACGTGGCCGTTATGTTCGCCACCATCACCAACATGGAGGTCAACACGGACATTTCGGTCGAGAACGAGAAGAGCGTGCTGAAGGTGTTGAACGAGATCATCTGCGACTTCGACGAGCGGTTGCAGTACTTTGACGGGTATCTGAAGGTGGAGAAGATTAAAGTGGCCGGCTGGACGTACATGGCGGCCTGCGGACTGGATCCGGGCCGGTGCGATTCATCGTCCTCGCTCAGCGGCTACCGCTCGGTGTCCGGTATGACGCGTACCTCGCTCATGACCAACGGTCGCCGTAGCCTTTAATCCGGCACCTCGCTGGGAGGGTGGCGCACAAAAGCGGAGCACCANGCACGGCGGCAGCAATTCGAGGCAACNAGTCGCCCATAGCAACAACGTCAACGATCGTTATGGCCGANGTTTTGCGCTCGAAGCTGATGCGCGTGTTGGGCGANTTTAGGCAATGAAAACTTCAAACAAACCAGCCCAGGGATTGCTGACGGGTNGGTATTCGCACNGGGAAGGTAATGGGGGTTGGTAAGGTCCCAGCA] [+] EMBL BX467916 [GCAGATTCGGCACGATGGATACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTTGATCCAAAGGTCTCTCATCTCATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAGGAAGCCGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTGCCGACGCATGTGGCCGAAATCTACATCAATCGGCAGCTGAAAAACGAGTTCTACAACGAGGAGTACGAAAACGTGGCCGTTATGTTCGCCACCATCACCAACATGGAGGTCAACACGGACATTTCGGTCGAGAACGAGAAGAGCGTGCTGAAGGTGTTGAACGAGATCATCTGCGACTTCGACGAGCGGTTGCAGTACTTTGACGGGTATCTGAAGGTGGAGAAGATTAAAGTGGCCGGCTGGACGTACATGGCGGCCTGCGGACTGGATCCGGGCCGGTGCGATTCATCGTCCTCGCTCAGCGGCTACCGCTCGGTGTCCGGTATGACGCGTACCTCGCTCATGACCAACGGTCGCCGTAGCCTTTAATCCGGCACCTCGCTGGGAGGGTGGCGCACAAAAGCGGAGCACCANGCACGGCGGCAGCAATTCGAGGCAACNAGTCGCCCATAGCAACAACGTCAACGATCGTTATGGCCGANGTTTTGCGCTCGAAGCTGATGCGCGTGTTGGGCGANTTTAGGCAATGAAAACTTCAAACAAACCAGCCCAGGGATTGCTGACGGGTNGGTATTCGCACNGGGAAGGTAATGGGGGTTGGTAAGGTCCCAGCA] consensusID : consensus_5410#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGGGTTCAAGAAGGTGTGGGATGTATACACACCCTACTCGATCGACGATCTGCTGCGTGTGCGGAAACCTCAGTCGAGGGTAATGGGAATATTTTACGACTTTTCCAACGACATCATGAGCAACTTTGTGATACGGACGGTGATCTATCTGATTACGATCGCGTTACTAGTGGTATGTTCGTTGATGTATCTGATCGAGTGTAATTACGATCTGTTGGAGCAAACGTCTACTACCAGCGTACCAGTGAGTGACAATCTAACGAGTCTGTTTCAAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGGTAAGTGAGTCCAAGGCTTGTGCAATATGATCGACTAATCTGCTGTACTGCGATGTCAAAAATGTTTCGTTTCTTCCCTCCAGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAG] [+] EMBL BM654244 [CCGGGTTCAAGAAGGTGTGGGATGTATACACACCCTACTCGATCGACGATCTGCTGCGTGTGCGGAAACCTCAGTCGAGGGTAATGGGAATATTTTACGACTTTTCCAACGACATCATGAGCAACTTTGTGATACGGACGGTGATCTATCTGATTACGATCGCGTTACTAGTGGTATGTTCGTTGATGTATCTGATCGAGTGTAATTACGATCTGTTGGAGCAAACGTCTACTACCAGCGTACCAGTGAGTGACAATCTAACGAGTCTGTTTCAAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGGTAAGTGAGTCCAAGGCTTGTGCAATATGATCGACTAATCTGCTGTACTGCGATGTCAAAAATGTTTCGTTTCTTCCCTCCAGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5410#0 CCGAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGTC 60 consensus_5410#2 ------------------------------------------------------------ consensus_5410#1 ------------------------------------------------------------ consensus_5410#0 AGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTT 120 consensus_5410#2 -------------------CCGG-GTTCAAGAAGGTGTG---GGATGTATACACACCCTA 37 consensus_5410#1 ------------------------------------------------------------ consensus_5410#0 CCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGA 180 consensus_5410#2 CTCGATCGACGATCTGCTGCGTGTGCGGAAA-----CCTCAGTCGA-GGGTAATG--GGA 89 consensus_5410#1 ------------------------------------------------GCAGATTCGGCA 12 * ** * consensus_5410#0 CGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAA-GG 239 consensus_5410#2 ATATTT-TACGACTTTTCCAACGACATCATGAGC---AACTTTG----TGATACGGACGG 141 consensus_5410#1 CGAT------GGATACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTTGATCCAAA-GG 65 ** * * * ** *** *** ** *** * * ** consensus_5410#0 TCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGT 299 consensus_5410#2 TGATCTATCTGATTACGATCGCGTTACTAGTGGT-ATGTT-CGTTGATGTATCTGAT--- 196 consensus_5410#1 TCTCTCATCTCATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGT 125 * **** ** **** ** * *** * ** ** * *** * ** consensus_5410#0 CCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAAG 359 consensus_5410#2 -CGAGTGTAAT-TACGATCTG-------TTGGAGCAAACGTCTACTAC----CAGCGTAC 243 consensus_5410#1 CCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAGG 185 ***** * * ** * * ***** *** ** ** * * consensus_5410#0 AAGCGGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTACCGACGCATG 419 consensus_5410#2 CAGTG--AGTGAC-AATCTAACGAGTCTGTTTCAAGAAAACCAAACATCGCTCGATCCTA 300 consensus_5410#1 AAGCCGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTGCCGACGCATG 245 ** *** ** ** * ***** * * * * * * * * * * * consensus_5410#0 TGGGCCCAAC--ACTCCTACACTCAACCTCGCGCCACGCCTGNTACCCACCACCGCACGC 477 consensus_5410#2 TGG-CCAAAA--ACTTTTGTACAAATCCATGGGTAAG---TGAGTCCAAGGCTTGTGCAA 354 consensus_5410#1 TGGCCGAAATCTACATCAATCGGCAGCTGAAAAACGAGTTCTACAACGAGGAGTACGAAA 305 *** * ** ** * * * * consensus_5410#0 TNCCTACNNACCGCACGGGAGCTACCGC-AACAACGTGGCCCGCTTAACTGCTCTCGNCA 536 consensus_5410#2 TATG-ATCGACTAATCTGCTG-TACTGC-GATGTCAAAAATGTTTCGTTTCTTCCCTCCA 411 consensus_5410#1 ACGTGGCCGTTATGTTCGCCACCATCACCAACATGGAGGTCAACACGGACATTTCGGTCG 365 * * * * * * consensus_5410#0 GCCACTCAGCCAA-GC-ATGGGAGGGTCAACCACGGAGCANTTTCGGGTCGAGAACGACG 594 consensus_5410#2 GTCAGTCACCCAGTGT-CTTACACTGGCGATCG-GGATGGCTTTCCTGTTTCTCCGGATA 469 consensus_5410#1 AGAACGAGAAGAGCGTGCTGAAGGTGTTGAACG-AGATCATCTGCGACTTCGACGAGCGG 424 * * * * * * * ** * * * * consensus_5410#0 C-ACAN---GCAAGCCGCTGCCTTGAAACAGC-GGCTGCNTTCTGCAACACCCNGCACGC 649 consensus_5410#2 C-ACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTAT-TGCTGGGCAA 527 consensus_5410#1 TTGCAGTACTTTGACGGGTATCTGAAGGTGGAGAAGATTAAAGTGGCCGGCTGGACGTAC 484 * * * * consensus_5410#0 ACTCCAACTCCTGCCAGCAACCCTCTCCGCACCGGCCAGGCCCGAGCGTTTGGCCACGCT 709 consensus_5410#2 TTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAAC-CCTGGTCTCGAT 586 consensus_5410#1 ATGGCGGCCTGCGGACTGGATCCGGGCCGGTGCGATTCATCGTCCTCGCTCAGCGGCTAC 544 * * * * * * * consensus_5410#0 CAACCNCTCTCGTGGCAACCNGCGCTGCTTTACTTCCCTTGCACACGCTGCTTGCGC--A 767 consensus_5410#2 CCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATT--G 644 consensus_5410#1 CGCTCGGTGTCCGGTATGACGCGTACCTCGCTCATGACCAACGGTCGCCGTAGCCTTTAA 604 * * ** * * * consensus_5410#0 CTGGACAGGACTCTTAAACACTGACTTGGGAACCAGAGACCCTTGTGTCAACACCNGCA- 826 consensus_5410#2 ATCGACAG---------------------------------------------------- 652 consensus_5410#1 TCCGGCACCTCGCTGGGAGGGTGGCGCACAAAAGCGGAGCACCANGCACGGCGGCAGCAA 664 * ** consensus_5410#0 -TTAAGCCNACCTTGCGGGCCCGGGTACCCCGTGCCAG-------CGGCACANACNATAG 878 consensus_5410#2 ------------------------------------------------------------ consensus_5410#1 TTCGAGGCAACNAGTCGCCCATAGCAACAACGTCAACGATCGTTATGGCCGANGTTTTGC 724 consensus_5410#0 GCGCGAAGCATNCNCCCGCATGAANGGACAACCGCAGGTCATGACCGCACGTTCTCCAAC 938 consensus_5410#2 ------------------------------------------------------------ consensus_5410#1 GCTCGAAGCTGATGCGCGTGTTGGGCGANTTTAGGCAATGAAAACTTCAAACAAACCAGC 784 consensus_5410#0 TCCGGCATTCCCCTTCTGCACTCATCCAAGNGTAACGTGAGCACATTATCGGCCGGACCA 998 consensus_5410#2 ------------------------------------------------------------ consensus_5410#1 CCAGGGATTGCTGACGGGTNGGTATTCGCACNGGGAAGGTAATGGGGGTTGGTAAGGTCC 844 consensus_5410#0 CTTCCGCGACATGNA 1013 consensus_5410#2 --------------- consensus_5410#1 CAGCA---------- 849 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||