These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGCGGACGCGTGGGTGAGCCTGCATTCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGGTGTGTGTGTGGTTTTTTTGTTTGCTACAGAAGCGCACCGCTGTACCAGCT] [+] EMBL BM656025 [CCGCGGACGCGTGGGTGAGCCTGCATTCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGGTGTGTGTGTGGTTTTTTTGTTTGCTACAGAAGCGCACCGCTGTACCAGCT] consensusID : consensus_5412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGGCTTCTCTCTATTTCCCAGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGTGTGGGGGGTGGTTTTTTGTTTGCTACAGAAGCGCACCGCTGTA] [+] EMBL BM653689 [CCGGCTTCTCTCTATTTCCCAGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATGATTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGCAGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTCAACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGCCCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAAGGGGGGTGTGGGGGGTGGTTTTTTGTTTGCTACAGAAGCGCACCGCTGTA] consensusID : consensus_5412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCGATTCGGTACGGTACGAACCCGGCGCGGGTACGAACGTTTGCGTGTGCGTTTGCGCGTGTGTTGTTCGGTGGTTGCGGGAAAGAAACACCCAGCACCTACCGCCCTGCTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCGGTTTGTTACACCGTGCGACAGTTCCCGGTAGTGTGGCAATCCTGGTTTTACGCATAAATTTATTTTAATTGCATATCGATTCCGGCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACATAATTAAGTGAAATG] [+] EMBL BM639120 [CCGATTCGGTACGGTACGAACCCGGCGCGGGTACGAACGTTTGCGTGTGCGTTTGCGCGTGTGTTGTTCGGTGGTTGCGGGAAAGAAACACCCAGCACCTACCGCCCTGCTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCGGTTTGTTACACCGTGCGACAGTTCCCGGTAGTGTGGCAATCCTGGTTTTACGCATAAATTTATTTTAATTGCATATCGATTCCGGCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACCCCCGAAGGGTAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGGAACTTCCGGGTGGTCGCTGCACGATAGATTAAAAAGCACGGATTTTATTGCGCATTCTCTCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACATAATTAAGTGAAATG] consensusID : consensus_5412#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [GGCAGAATTCGGCACGATTNAGAAAGAAACACCCAGCACCTACCCGCCCTGTTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCTGGTTTGTTACACCGTGCGACAGTTCCCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACGCCCCGAAGGGTAAGACTGGCCCCCGACTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGTGAACTTCCGGGTGGTCGCTGCACAGATAGATTAACAAAGCACGGATTTATATTGCGCATTCTCATCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACCAATTAATTAAAGGTTGACAAACTGACTTTCTAATGGCCTTGGGGCAAACGGGNACAACGCCGAAACGGGCAGGACCGAAACCAACCNCGNAACCGGAAGGGGCCAGCGCAGCACAGCCAGGCATC] [+] EMBL BX467182 [GGCAGAATTCGGCACGATTNAGAAAGAAACACCCAGCACCTACCCGCCCTGTTCGGGGCAAAGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCTGGTTTGTTACACCGTGCGACAGTTCCCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAGTGGCCTGTGAACGTAGTGGTGGTGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGTGAGCAAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACGCCCCGAAGGGTAAGACTGGCCCCCGACTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGTGAACTTCCGGGTGGTCGCTGCACAGATAGATTAACAAAGCACGGATTTATATTGCGCATTCTCATCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACCAATTAATTAAAGGTTGACAAACTGACTTTCTAATGGCCTTGGGGCAAACGGGNACAACGCCGAAACGGGCAGGACCGAAACCAACCNCGNAACCGGAAGGGGCCAGCGCAGCACAGCCAGGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5412#2 CCGATTCGGTACGGTACGAACCCGGCGCGGGTACGAACGTTTGCGTGTGCGTTTGCGCGT 60 consensus_5412#3 -----------------------------------------------------------G 1 consensus_5412#0 ------------------------------------------------------------ consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 GTGTTGTTCGGTGGTTGCGGGAAAGAAACACCCAGCACCTACC-GCCCTGCTCGGGGCAA 119 consensus_5412#3 GCAGAATTCGGCACGATTNAGAAAGAAACACCCAGCACCTACCCGCCCTGTTCGGGGCAA 61 consensus_5412#0 ------------------------------------------------------------ consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 AGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTC-GGTTTG 178 consensus_5412#3 AGAGCAGGCCTGATGGTGGCTTACACACCCGTGGGCAGTGTGATTTAGTTTTCTGGTTTG 121 consensus_5412#0 ------------------------------------------------------------ consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 TTACACCGTGCGACAGTTCCCGGTAGTGTGGCAATCCTGGTTTTACGCATAAATTTATTT 238 consensus_5412#3 TTACACCGTGCGACAGTTCCCG-------------------------------------- 143 consensus_5412#0 ---------------------------------------------------CCGCGGACG 9 consensus_5412#1 ------------------------------------------------------------ consensus_5412#2 TAATTGCATATCGATTCCGGCGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 298 consensus_5412#3 ----------------------TGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 181 consensus_5412#0 CGTGGGTGAGCCTGCATTC--GTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 67 consensus_5412#1 CCGGCTTCTCTCTATTTCCCAGTGCACCAGTGCAACCAGCGACGGAACTCACCCAGATAG 60 ************************************** consensus_5412#2 TGGCCTGTGAACGTAGTGGTGGTGGGTGGTGATGTACTCAACGCCTGTACAATGTTGTGT 358 consensus_5412#3 TGGCCTGTGAACGTAGTGGTGGTGG-TGGTGATGTACTCAACGCCTGTACAATGTTGTGT 240 consensus_5412#0 TGGCCTGTGAACGTAGTGGTGGTGG-TGGTGATGTACTCAACGCCTGTACAATGTTGTGT 126 consensus_5412#1 TGGCCTGTGAACGTAGTGGTGGTGG-TGGTGATGTACTCAACGCCTGTACAATGTTGTGT 119 ************************* ********************************** consensus_5412#2 GAGCAA-GTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTAC-CCCCGAAGGG 416 consensus_5412#3 GAGCAAAGTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTACGCCCCGAAGGG 300 consensus_5412#0 GAGCAA-GTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTAC-CCCCGAAGGG 184 consensus_5412#1 GAGCAA-GTAGTGAAGTAAAAAGCAACAAGAACGGCAATATTTATCTAC-CCCCGAAGGG 177 ****** ****************************************** ********** consensus_5412#2 TAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGG-GAA 475 consensus_5412#3 TAAGACTGGCCCCCGACTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGGTGAA 360 consensus_5412#0 TAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGG-GAA 243 consensus_5412#1 TAAGACTGCCCCCCGCCTGGGACTGCGATCCGGTGGGCCTTGTGTCTTTCCGCGGG-GAA 236 ******** ****** **************************************** *** consensus_5412#2 CTTCCGGGTGGTCGCTGCAC-GATAGATTAA-AAAGCACGGATTT-TATTGCGCATTCTC 532 consensus_5412#3 CTTCCGGGTGGTCGCTGCACAGATAGATTAACAAAGCACGGATTTATATTGCGCATTCTC 420 consensus_5412#0 CTTCCGGGTGGTCGCTGCAC-GATAGATTAA-AAAGCACGGATTT-TATTGCGCATTCTC 300 consensus_5412#1 CTTCCGGGTGGTCGCTGCAC-GATAGATTAA-AAAGCACGGATTT-TATTGCGCATTCTC 293 ******************** ********** ************* ************** consensus_5412#2 -TCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACA-TAATTAAGTGAAATG----- 585 consensus_5412#3 ATCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAAC--CAATTAATTAAAGGTTGACA 478 consensus_5412#0 -TCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATG----A 355 consensus_5412#1 -TCGCTCGCTGCGCGTGAAGCTGTGTAGTGAAGGGAACAATAATTAAGTGAAATG----A 348 ************************************* ****** * ** consensus_5412#2 ------------------------------------------------------------ consensus_5412#3 AACTGACTTTCTAATGGCCTTGGGGCAAACGGGNACAACGCCGAAACGGGCAGGACCGAA 538 consensus_5412#0 TTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGC 415 consensus_5412#1 TTTTTGCCTGGCAACGGCAACCGAACGGCAGCCCGAACCACCCGAACGGAGGGCAGCAGC 408 consensus_5412#2 ------------------------------------------------------------ consensus_5412#3 ACCAACCNCGNAACCGGAAGGGGCCAGCGCAGCACAGCCAGGCATC-------------- 584 consensus_5412#0 AGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTC 475 consensus_5412#1 AGCAGCATCCCAACCGGTACAATGTAACCGACCACCGTGGCGTCTGTTTTGTGGTTGTTC 468 consensus_5412#2 ------------------------------------------------------------ consensus_5412#3 ------------------------------------------------------------ consensus_5412#0 AACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGC 535 consensus_5412#1 AACAGCAGCAGCAGCAGCAGCACCACCACTGCCGGTGGCACCGGAACGCGTAGAGCACGC 528 consensus_5412#2 ------------------------------------------------------------ consensus_5412#3 ------------------------------------------------------------ consensus_5412#0 CCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAA 595 consensus_5412#1 CCGAGCGACGCCGACACCGACAGCCTCCGACAAGCTTCCAGTTTTTTTGCCAAAAACAAA 588 consensus_5412#2 --------------------------------------------------------- consensus_5412#3 --------------------------------------------------------- consensus_5412#0 GGGGGGGTGTGTGTGTGGTTTTTTTGTTTGCTACAGAAGCGCACCGCTGTACCAGCT 652 consensus_5412#1 GGGGGG-TGTGGGGGGTGGTTTTTTGTTTGCTACAGAAGCGCACCGCTGTA------ 638 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||