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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 831 fasta sequence
[GCAGAATCGGCACGAGGTGCGCGTAGCTGATTGATTGGATTTCTACGTTCGGGAGAGCTCAGCCTTAATGTGTGCATTGTGGCATTGTTGTGCTTAGTACTGATTGCGTTTCTAAGCACCTAAAAGTATGGCTCGAATGAACGCCCAAACACTTTCAGGTGGGACGGTGGTTGGTTCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTAATTGTGTACGCGTCTGATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAACGATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGTTCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAGCGAACCCCACGCTGGAGGTCACTTTCAATGGCTTAGAAGTTGCCCGCACGTCGGATATTTCCTGGCCAGGGGAACATGAACGGGCCGTTGGGTCAAGCTTNGGAATCTGGGACCGAAAAATCAGAAATTAACCCGCGGAATTGCAGGCTTGGAAAGGCCGTTTAGGGTCACAAAATTTTTCCACACAAACACTCGGTTTAGNAACCCGGGAGGCTTGGTCCACATTTAACACGGCCCAGGGAGAAAACCCNCTTGGAGATTTACACACCCAGNAGCANGGGGNTCTGCAACANTTCGNACGGTTTTGAATTTNTTNAAAGCCCTNTTGGGCCNCCAANAAGCAAGAAAANTTTTCCCAAAANACGCGGGGATCNGGGGGAAGTTTTAGATCTNCGGNAAAGNCACCAAANNTGTGGGGGNCGA]
[+] EMBL BX467533 [GCAGAATCGGCACGAGGTGCGCGTAGCTGATTGATTGGATTTCTACGTTCGGGAGAGCTCAGCCTTAATGTGTGCATTGTGGCATTGTTGTGCTTAGTACTGATTGCGTTTCTAAGCACCTAAAAGTATGGCTCGAATGAACGCCCAAACACTTTCAGGTGGGACGGTGGTTGGTTCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTAATTGTGTACGCGTCTGATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAACGATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGTTCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAGCGAACCCCACGCTGGAGGTCACTTTCAATGGCTTAGAAGTTGCCCGCACGTCGGATATTTCCTGGCCAGGGGAACATGAACGGGCCGTTGGGTCAAGCTTNGGAATCTGGGACCGAAAAATCAGAAATTAACCCGCGGAATTGCAGGCTTGGAAAGGCCGTTTAGGGTCACAAAATTTTTCCACACAAACACTCGGTTTAGNAACCCGGGAGGCTTGGTCCACATTTAACACGGCCCAGGGAGAAAACCCNCTTGGAGATTTACACACCCAGNAGCANGGGGNTCTGCAACANTTCGNACGGTTTTGAATTTNTTNAAAGCCCTNTTGGGCCNCCAANAAGCAAGAAAANTTTTCCCAAAANACGCGGGGATCNGGGGGAAGTTTTAGATCTNCGGNAAAGNCACCAAANNTGTGGGGGNCGA]
consensusID : consensus_5414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[AAATCCCCCGAGGTAGTCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTATTGTGTACGCGTCTGATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAACGATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGTTCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAGCGAACCCCACGCTGGAGGTCACTTTCAATGGCTTAGAAGTGCCGCACGTCGATATAGTTATTTTACCTGCCCAACAAACTCCAACGGCTGGATTTATCGAACAACTGGATCAGCGAAATCAAAGGCTTCAAATCATTCACCTGGGGTGAGCTAAGGCATCTCAACCTCTCGCACAATCGCATCGAGTCGCTGCGCACCGAGCTGTCCAAGCTCGATGCACTGGACACACTGGACTTGTCTCACAACTCCATCAAGAAAGTTGACAGCAAACCTATCATACTGTCCCGATCGCTGCGCAGGTTACTTCTCGATCACAACAAGTTCACCGCGTGGCCGTTCGATTCGCTACCGGATACGTTGGTTGAGCTTTCCCTAAGCTTTAACGAGCTCGAAACGACAAAAGAGGGCCACTATGTACG]
[+] EMBL AL933260 [AAATCCCCCGAGGTAGTCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTATTGTGTACGCGTCTGATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAACGATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGTTCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAGCGAACCCCACGCTGGAGGTCACTTTCAATGGCTTAGAAGTGCCGCACGTCGATATAGTTATTTTACCTGCCCAACAAACTCCAACGGCTGGATTTATCGAACAACTGGATCAGCGAAATCAAAGGCTTCAAATCATTCACCTGGGGTGAGCTAAGGCATCTCAACCTCTCGCACAATCGCATCGAGTCGCTGCGCACCGAGCTGTCCAAGCTCGATGCACTGGACACACTGGACTTGTCTCACAACTCCATCAAGAAAGTTGACAGCAAACCTATCATACTGTCCCGATCGCTGCGCAGGTTACTTCTCGATCACAACAAGTTCACCGCGTGGCCGTTCGATTCGCTACCGGATACGTTGGTTGAGCTTTCCCTAAGCTTTAACGAGCTCGAAACGACAAAAGAGGGCCACTATGTACG]
consensusID : consensus_5414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence
[TACTACCCGTTATCGTTATCACGTTGATATGATAACACAGCTGTCCGAGGCCCCGAGTCGAGCCTTGTCCGCGCGCAGTTGGTAGTGAGTGCGCGTAGCTGATTGATTGGATTTCTACGTTCGGGAGAGCTCAGCCTTAA--TGTGCATTGTTGCATTCTTGTGCTTAGTACTGATTGCTTTTCTAAGCAACTAAAAGTATGGCTCGAAGAACACCCAAACACTTTCAGGTGGGATGGTGGTTGGTTCGGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTAATTGTGTACGCGTCTGATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAATGATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGTTCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAGCGAACCCCACGCTGGAGGTCACTTTCAATGGCTTANAAGTGCCGCACGTCGATATTCTGCAGGGACATGACGGCGTGGTCANCTTGAATCTGGACGAAAATCAAATAACCGCGATGGAGGCTGAAGCGTTTGTCAATTTCAAAATGTTGACCGTGCTGTCA]
[+] EMBL BX623571 [TACTACCCGTTATCGTTATCACGTTGATATGATAACACAGCTGTCCGAGGCCCCGAGTCGAGCCTTGTCCGCGCGCAGTTGGTAGTGAGTGCGCGTAGCTGATTGATTGGATTTCTACGTTCGGGAGAGCTCAGCCTTAA TGTGCATTGTTGCATTCTTGTGCTTAGTACTGATTGCTTTTCTAAGCAACTAAAAGTATGGCTCGAAGAACACCCAAACACTTTCAGGTGGGATGGTGGTTGGTTCGGTTGTGGCTAATGAGCGGTCTAATGA ]
[+] EMBL BX628219 [ TACGTTCGGGAGAGCTCAGCCTTAATGTGTGCATTGTGGCATTGTTGTGCTTAGTACTGATTGCGTTTCTAAGCACCTAAAAGTATGGCTCGAAGAACGCCCAAACACTTTCAGGTGGGACGGTGGTTGGTTCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTAATTGTGTACGCGTCTGATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAATGATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGTTCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAGCGAACCCCACGCTGGAGGTCACTTTCAATGGCTTANAAGTGCCGCACGTCGATATTCTGCAGGGACATGACGGCGTGGTCANCTTGAATCTGGACGAAAATCAAATAACCGCGATGGAGGCTGAAGCGTTTGTCAATTTCAAAATGTTGACCGTGCTGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5414#0 ------------------------------------------------------------
consensus_5414#2 TACTACCCGTTATCGTTATCACGTTGATATGATAACACAGCTGTCCGAGGCCCCGAGTCG 60
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 ------------GCAGAATCGGCACGAGGTGCGCGTAGCTGATTGATTGGATTTCTACGT 48
consensus_5414#2 AGCCTTGTCCGCGCGCAGTTGGTAGTGAGTGCGCGTAGCTGATTGATTGGATTTCTACGT 120
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TCGGGAGAGCTCAGCCTTAATGTGTGCATTGTGGCATTGTTGTGCTTAGTACTGATTGCG 108
consensus_5414#2 TCGGGAGAGCTCAGCCTTAATGT--GCATTGTTGCATTCTTGTGCTTAGTACTGATTGCT 178
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TTTCTAAGCACCTAAAAGTATGGCTCGAATGAACGCCCAAACACTTTCAGGTGGGACGGT 168
consensus_5414#2 TTTCTAAGCAACTAAAAGTATGGCTCGAA-GAACACCCAAACACTTTCAGGTGGGATGGT 237
consensus_5414#1 --------------------------------------AAATCCCCCGAGGTAG------ 16
*** * **** *
consensus_5414#0 GGTTGGTTCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTAATTGTGTACGCGTCTG 228
consensus_5414#2 GGTTGGTTCGGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTAATTGTGTACGCGTCTG 297
consensus_5414#1 -------TCAGTTGTGGCTAATGAGCGGTCTAATGATGCCGGTA-TTGTGTACGCGTCTG 68
** ********************************** ***************
consensus_5414#0 ATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAACG 288
consensus_5414#2 ATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAATG 357
consensus_5414#1 ATGAGCCGCTGCAAACGGCAAAAGTGTGTCAGTATATGCAGTGCACTGTTAGTGAGAACG 128
********************************************************** *
consensus_5414#0 ATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGT 348
consensus_5414#2 ATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGT 417
consensus_5414#1 ATGGCGCGCAAGTGCGGCTACGGTTTAATCACACCATGTGGAAACAATACAGCGGATCGT 188
************************************************************
consensus_5414#0 TCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAG 408
consensus_5414#2 TCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAG 477
consensus_5414#1 TCAATCAAGAGTTCGACTTTACCAGCTGGAGCTGGTCCGAGCTTGATAGTGTGGCGGAAG 248
************************************************************
consensus_5414#0 CGAACCCCACGCTGGAGGTCACTTTCAATGGCTTAGAAGTTGCCCGCACGTCGG-ATA-- 465
consensus_5414#2 CGAACCCCACGCTGGAGGTCACTTTCAATGGCTTANAAGT--GCCGCACGTCG--ATA-- 531
consensus_5414#1 CGAACCCCACGCTGGAGGTCACTTTCAATGGCTTAGAAGT--GCCGCACGTCGATATAGT 306
*********************************** **** ********** ***
consensus_5414#0 ---TTTCCTGGCCAGGGGAACATGAACGGGCCGTTGGGTCAAGC--TTNGGAATCTGGGA 520
consensus_5414#2 ---TT------CTGCAGGGACATGACGGCGTGGTCANCTTGAAT--CTGGA---CGAAAA 577
consensus_5414#1 TATTTTACCTGCCCAACAAACTCCAACGGCTGGATTTATCGAACAACTGGATCAGCGAAA 366
** * ** * * * * * * * *
consensus_5414#0 CCGAAAAATCAGAAA--TTAACCCGCGGAATT-GCAGGCTTGGAAAGGCCGTTTAGGGTC 577
consensus_5414#2 TCAAATAACCGCGAT--GGAGGCTGAAGCGTTTGTCAATTTCAAAATGTTGACCGTGCTG 635
consensus_5414#1 TCAAAGGCTTCAAATCATTCACCTGGGGTGAGCTAAGGCATCTCAACCTCTCGCACAATC 426
* ** * * * * * ** *
consensus_5414#0 ACAAAATTTTTCCACACAAACACTCGGTTTAGN--AACCCGGGAGGCTTGGTCCACATTT 635
consensus_5414#2 TCA--------------------------------------------------------- 638
consensus_5414#1 GCATCGAGTCGCTGCGCACCGAGCTGTCCAAGCTCGATGCACTGGACACACTGGACTTGT 486
**
consensus_5414#0 AACACGGCCCAGGGAGAAAACCCNCTTGGAGATTTA-CACACCCAGNAGCANGGGGNTCT 694
consensus_5414#2 ------------------------------------------------------------
consensus_5414#1 CTCACAACTCCATCAAGAAAGTTGACAGCAAACCTATCATACTGTCCCGATCGCTGCGCA 546
consensus_5414#0 GCAACANTTCGNACGGTTTTGAATTTNTTNAAAGCCCTNTTGGGCCNCCAANAAGCAAGA 754
consensus_5414#2 ------------------------------------------------------------
consensus_5414#1 GGTTACTTCTCGATCACAACAAGTTCACCGCGTGGCCGTTCGATTCGCTACCGGATACGT 606
consensus_5414#0 AAANTTTTCCCAAAANACGCGGGGATCNGGGGGAAGTTTTAGATCTNCGGNAAAGNCACC 814
consensus_5414#2 ------------------------------------------------------------
consensus_5414#1 TGGTTGAGCTTTCCCTAAGCTTTAACGAGCTCGAAACGACAAAAGAGGGCCACTATGTAC 666
consensus_5414#0 AAANNTGTGGGGGNCGA 831
consensus_5414#2 -----------------
consensus_5414#1 G---------------- 667
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||