These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1183 fasta sequence [CGAGAAAAACGGAACATTGAATATCCAAACAAGCTGTGCGCACCGAAGCGCGAATACGCCGACATTGCCAGCCGCGGGTCCTACTCGTTCTACGATAACTGCAAACGGTAAGGGATGACCCAAGCGTTGCGGCACACTCGTTACATCTCATCTCAGCCCCCGCTAAGCCAGATTTCATGCAACAAACTCAGCACCACCACGCGCCATCACGAGGACACGTGCGTCATATGTGATTAATGCAGCGTATATCGCGTAGTTAGCAGCCTTCTAGCGTGCCTTCTAACGATTTAACGACCCACCTGTGTGTGTGTGTGTGTGTGTTTTTTGGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAGACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTATGGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCT-GGCAAGCCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGCAGAGACAGTCCTGCCCGGAAGAGGATACTTCAGATCGGGATCAGAGGCCGACGTTTCGAGGCGAGGAAAGGCAAAGGTTGTAGAAATAAGTTCGGTGTGGCGCCATGGCCCCTTCCGCCGGTCGGTGCGCGACACACCTTTCCATGCGTTTACTTTATTACCGTTAGCAAACTGAAAACATTATTGTGATACCTATACGAAAAGAATGACTGTAAAT] [+] EMBL BX623555 [CGAGAAAAACGGAACATTGAATATCCAAACAAGCTGTGCGCACCGAAGCGCGAATACGCCGACATTGCCAGCCGCGGGTCCTACTCGTTCTACGATAACTGCAAACGGTAAGGGATGACCCAAGCGTTGCGGCACACTCGTTACATCTCATCTCAGCCCCCGCTAAGCCAGATTTCATGCAACAAACTCAGCACCACCACGCGCCATCACGAGGACACGTGCGTCATATGTGATTAATGCAGCGTATATCGCGTAGTTAGCAGCCTTCTAGCGTGCCTTCTAACGATTTAACGACCCACCTGTGTGTGTGTGTGTGTGTGTTTTTTGGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAGACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTATGGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACNACAACAACAACAACNATATTTTGCATTGGTAGAGATANGNCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCT GG ] [+] EMBL BX617450 [ ATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAATCAGAGACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTATGGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCT GGCAAGCCAGGAA ] [-] EMBL CNS09DOD [ atAACAACAACAACAACAACAACAACAATTTTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTAGGCAAGTCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGCAGAGACAGTCCTGCCCGGAAGAGGATACTTCAGATCGGGATCAGAGGCCGACGTTTCGAGGCGAGGAAAGGCAAAGGTTGTAGAAATAAGTTCGGTGTGGCGCCATGGCCCCTTCCGCCGGTCGGTGCGCGACACACCTTTCCATGCGTTTACTTTATTACCGTTAGCAAACTGAAAACATTATTGTGATACCTATACGAAAAGAATGACTGTAAAT] consensusID : consensus_5415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [CTGGGTGCTTTTAACGATTTAACGACACACCTGTGTGTGTGTGTATTTTTGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAAACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTAACCTTCGCCAGAGGCCGAACATAACCCACGCTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGTCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGAGAGACAGTTCTGCCCGGAAGAGGATACTTCAGATCGGGAACAAA] [+] EMBL CNS09DOC [CTGGGTGCTTTTAACGATTTAACGACACACCTGTGTGTGTGTGTATTTTTGTTTTGTTATCTCTCACTCTCTCCATCTCTCTGTGTATTTCAACGCCCTTCTACTAAACCAGAAACACACTTTGTTCGCCCAGTGCGCGAGATCCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTAAATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTTCCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGCTCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTAACCTTCGCCAGAGGCCGAACATAACCCACGCTTGATTTGGTTTGTGTGAATAACAACAACAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTCCCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGTCAGGAATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATATATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTAGCTGTAAGAGAGACAGTTCTGCCCGGAAGAGGATACTTCAGATCGGGAACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5415#0 CGAGAAAAACGGAACATTGAATATCCAAACAAGCTGTGCGCACCGAAGCGCGAATACGCC 60 consensus_5415#1 ------------------------------------------------------------ consensus_5415#0 GACATTGCCAGCCGCGGGTCCTACTCGTTCTACGATAACTGCAAACGGTAAGGGATGACC 120 consensus_5415#1 ------------------------------------------------------------ consensus_5415#0 CAAGCGTTGCGGCACACTCGTTACATCTCATCTCAGCCCCCGCTAAGCCAGATTTCATGC 180 consensus_5415#1 ------------------------------------------------------------ consensus_5415#0 AACAAACTCAGCACCACCACGCGCCATCACGAGGACACGTGCGTCATATGTGATTAATGC 240 consensus_5415#1 ------------------------------------------------------------ consensus_5415#0 AGCGTATATCGCGTAGTTAGCAGCCTTCTAGCGTGCCTTCTAACGATTTAACGACCCACC 300 consensus_5415#1 ---------------------------CTGG-GTGC-TTTTAACGATTTAACGACACACC 31 ** * **** ** *************** **** consensus_5415#0 TGTGTGTGTGTGTGTGTGTGTTTTTTGGTTTTGTTATCTCTCACTCTCTCCATCTCTCTG 360 consensus_5415#1 TGTGTGTGTGTGTA--------TTTTTGTTTTGTTATCTCTCACTCTCTCCATCTCTCTG 83 ************* **** ********************************* consensus_5415#0 TGTATTTCAACGCCCTTCTACTAAACCAGAGACACACTTTGTTCGCCCAGTGCGCGAGAT 420 consensus_5415#1 TGTATTTCAACGCCCTTCTACTAAACCAGAAACACACTTTGTTCGCCCAGTGCGCGAGAT 143 ****************************** ***************************** consensus_5415#0 CCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTA 480 consensus_5415#1 CCTCCAGAGGGTGAGGGAGGAGGAGGACCCACCTTCATCCCTCCGTGTGTCGTCCCCTTA 203 ************************************************************ consensus_5415#0 AATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTT 540 consensus_5415#1 AATCATTTCTGTGAAATATTCGACATCTCGCGCGTAGTACACTGCCTTTCCATAGTTTTT 263 ************************************************************ consensus_5415#0 CCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGC 600 consensus_5415#1 CCTCTTAGAACAAGTACCCCAGTAGATGTTATTAGGTGGAGAGTGTCCAAACAGTTCAGC 323 ************************************************************ consensus_5415#0 TCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTATGATAGTGGTAT 660 consensus_5415#1 TCGATTAGTCGATTAGCCTGATCGTTCGTGTATAGTGGTATGATTTTA------------ 371 ************************************************ consensus_5415#0 GGCCTTCGCCAGAGGCCGAACACAACCCACACTTGATTTGGTTTGTGTGAATAACAACAA 720 consensus_5415#1 -ACCTTCGCCAGAGGCCGAACATAACCCACGCTTGATTTGGTTTGTGTGAATAACAACAA 430 ******************** ******* ***************************** consensus_5415#0 CAACAACAACAACAA---TATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTC 777 consensus_5415#1 CAACAACAACAACAACAATATTTTGCATTGGTAGAGATAGGCCAAAGTGATATAATATTC 490 *************** ****************************************** consensus_5415#0 CCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGCCAGG 837 consensus_5415#1 CCAGATATCGTGCAGGGTGAAATGTTGAAAGCCTTGCCGGCAACCCGCTGGCAAGTCAGG 550 ******************************************************* **** consensus_5415#0 AATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATAT 897 consensus_5415#1 AATGGTCTCCGTTTGTTCATTTCGTTCACTTTCTTTACCCCGCCCCATCGGGAGCCATAT 610 ************************************************************ consensus_5415#0 ATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTA 957 consensus_5415#1 ATGTGTAATGCTTTTCTTTTGTTTTGAATTTGTTCAAATACAATACGCGTAGTAGAATTA 670 ************************************************************ consensus_5415#0 GCTGTAAGCAGAGACAGTCCTGCCCGGAAGAGGATACTTCAGATCGGGATCAGAGGCCGA 1017 consensus_5415#1 GCTGTAAG-AGAGACAGTTCTGCCCGGAAGAGGATACTTCAGATCGGGAACAAA------ 723 ******** ********* ****************************** ** * consensus_5415#0 CGTTTCGAGGCGAGGAAAGGCAAAGGTTGTAGAAATAAGTTCGGTGTGGCGCCATGGCCC 1077 consensus_5415#1 ------------------------------------------------------------ consensus_5415#0 CTTCCGCCGGTCGGTGCGCGACACACCTTTCCATGCGTTTACTTTATTACCGTTAGCAAA 1137 consensus_5415#1 ------------------------------------------------------------ consensus_5415#0 CTGAAAACATTATTGTGATACCTATACGAAAAGAATGACTGTAAAT 1183 consensus_5415#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||