These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1423 fasta sequence [TTTATAATCAACCTCGTAGTAACTGCTCGTGGCGTTAAACCGCATCCGTTGCGTGCTGGAAGAGTGTGTGAATTCGTCCACTTCCACTCTGCTGTTCCTCTGTTGAGTTATGGTTTTGCTTTACAGGCGAACGCACAATCGATGGGCGATCGGTACCATTCAGGTCAGGGAGAGGGGGGTACATCAAACCTGAATGTTTGACGATGCAAACACGTTGAACGTGATTTGCTTTATCTCGAGTATTTGTAGCAAAAGGGACAGTAATACTTCCTTCAAGTTGTATTAAAATCATATTGGTTTGCAAAGACGCAAAATTTGCACCTAACGTAACGGTCATGATTCAGGTCAGGAATCATTCCCAATCCCACCCAGTTTTTGGTGCGTTTTTTTCAACTGTGCCAACAGCGTGTTGTTGTTGTTGTGGCATTGAATTAAATTTAGTCCACTTGAGAGATATTGAATTGAGCTTCGATTCTTGATGCCAAACGAAGGAGAAGCGTGAAATACTTACTAGGAAAAGTACACGAACTGATGATACGCGGGCAATCGCTCCTCTCTACCGATTTTTGGTTAGTAAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCACGCACCCTGTATTGTGTGATGTTGGCACGTGTTACAGGGTT--TTTCAGGAGCTCCCATAACTTTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACCTATTGTAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGGAAGTGTCCCACAACTATGAGAGCCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACCGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCCAATCCCCCAAACATACGCACACACAAACGAGTACAATGCTGCGTTCGGTGTTGCACATGATTACATCTCAACTATATTATCCANAGACGCCCAGCTTAAAAAATCACAATACAGGAACCCACTCGCATAGCAAAAGTGCGCAAATGTTTAAATAATA] [+] EMBL BX606344 [TTTATAATCAACCTCGTAGTAACTGCTCGTGGCGTTAAACCGCATCCGTTGCGTGCTGGAAGAGTGTGTGAATTCGTCCACTTCCACTCTGCTGTTCCTCTGTTGAGTTATGGTTTTGCTTTACAGGCGAACGCACAATCGATGGGCGATCGGTACCATTCAGGTCAGGGAGAGGGGGGTACATCAAACCTGAATGTTTGACGATGCAAACACGTTGAACGTGATTTGCTTTATCTCGAGTATTTGTAGCAAAAGGGACAGTAATACTTCCTTCAAGTTGTATTAAAATCATATTGGTTTGCAAAGACGCAAAATTTGCACCTAACGTAACGGTCATGATTCAGGTCAGGAATCATTCCCAATCCCACCCAGTTTTTGGTGCGTTTTTTTCAACTGTGCCAACAGCGTGTTGTTGTTGTTGTGGCATTGAATTAAATTTAGTCCACTTGAGAGATATTGAATTGAGCTTCGATTCTTGATGCCAAACGAAGGAGAAGCGTGAAATACTTACTAGGAAAAGTACACGAACTGATGATACGCGGGCAATCGCTCCTCTCTACCGATTTTTGGTTAGTAAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCACGCACCCTGTATTGTGTGATGTTGGCACGTGTTACAGGGTT TTTCAGGAGCTCCCATAACTTTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACCTATTGTAATGGGAATTGGACTCTATATCACTCCTGTTGG ] [+] EMBL AL933518 [ gatcccgaGGTTAGTTTCAGGAGCTCCCATAGCTGTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGGAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGGAAGTGTCCCACAACTATGAGAGCCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACCGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCCAATCCCCCAAACATACGCACACACAAACGAGTACAATGCTGCGTTCGGTGTTGCACATGATTACATCTCAACTATATTATCCANAGACGCCCAGCTTAAAAAATCACAATACAGGAACCCACTCGCATAGCAAAAGTGCGCAAATGTTTAAATAATA] consensusID : consensus_5422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1289 fasta sequence [ATCGCCCCNAGGTGATTTTNGGTTACNAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCGCGCACCCTGTATTGTGTGATGTTGGCACATGTTACAGGGGTTTTCAGGAGACTCCCATAGCTGTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGCGAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGAAGTGTCCCACAACTATGAGAACCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGC-TTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCAATCCCCCACACATACGCACACACAAAGAGTACAATGCTGCGTTCGGTGTTGCACATGATTTACATTTTTAGCTATATTAGTCCAAGCGCCAGCTTAGAAATCACAATACAGGAACACACTCGCATAGGCAAAAGTGCGCAAAATGTTATAAAATAAATAGGGCATGAAATCGCTTTCCTCGTCTCTTCGTTTGAATCGCTACACGGCATCCCGCACACCCAGAGAAAAGGGGTATGAAATGAAAATACAACCATTTGTATGTGTGTGTGTTTGGCCCGAGGGTGTGATATAAATAATAACTTCTATATAAATATATATATTTTTTAAACTGATCAATTTCAACACCACAATGATAAATGGTGTGTTACAAACCTCTTAACGATTAATTAAATGTGTAAAAGCAAGGATAAAATATACATGCATATATATATATACATACATATACGCGCAAACGATTTATACAAAAGAAAACAAAAATACCTACNAAAGAACGAGGGGGGAAGGCTTCATGAAAAAAAAACAGACCAAAACGTAATTTGTAAACTGAGAAATGCCATGGCAATAGAGAGAAAC] [+] EMBL AL934865 [ATCGCCCCNAGGTGATTTTNGGTTACNAGCTATACTTCCATCTCTATCACCTTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCGCGCACCCTGTATTGTGTGATGTTGGCACATGTTACAGGGGTTTTCAGGAGACTCCCATAGCTGTGGGACACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGCGAATGGGAATTGGACTCTATATCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCCGTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGAAGTGTCCCACAACTATGAGAACCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTGTTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAACCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGC TTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGA ] [+] EMBL BX621322 [ gAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTATATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATAGGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGTATAAAAACACTTTACAACATAACAAAAACGCCAAATCTACAATGTACAGAAGAGAACAAAAAACCCAATCCCCCACACATACGCACACACAAAGAGTACAATGCTGCGTTCGGTGTTGCACATGATTTACATTTTTAGCTATATTAGTCCAAGCGCCAGCTTAGAAATCACAATACAGGAACACACTCGCATAGGCAAAAGTGCGCAAAATGTTATAAAATAAATAGGGCATGAAATCGCTTTCCTCGTCTCTTCGTTTGAATCGCTACACGGCATCCCGCACACCCAGAGAAAAGGGGTATGAAATGAAAATACAACCATTTGTATGTGTGTGTGTTTGGCCCGAGGGTGTGATATAAATAATAACTTCTATATAAATATATATATTTTTTAAACTGATCAATTTCAACACCACAATGATAAATGGTGTGTTACAAACCTCTTAACGATTAATTAAATGTGTAAAAGCAAGGATAAAATATACATGCATATATATATATACATACATATACGCGCAAACGATTTATACAAAAGAAAACAAAAATACCTACNAAAGAACGAGGGGGGAAGGCTTCATGAAAAAAAAACAGACCAAAACGTAATTTGTAAACTGAGAAATGCCATGGCAATAGAGAGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5422#0 TTTATAATCAACCTCGTAGTAACTGCTCGTGGCGTTAAACCGCATCCGTTGCGTGCTGGA 60 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 AGAGTGTGTGAATTCGTCCACTTCCACTCTGCTGTTCCTCTGTTGAGTTATGGTTTTGCT 120 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 TTACAGGCGAACGCACAATCGATGGGCGATCGGTACCATTCAGGTCAGGGAGAGGGGGGT 180 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 ACATCAAACCTGAATGTTTGACGATGCAAACACGTTGAACGTGATTTGCTTTATCTCGAG 240 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 TATTTGTAGCAAAAGGGACAGTAATACTTCCTTCAAGTTGTATTAAAATCATATTGGTTT 300 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GCAAAGACGCAAAATTTGCACCTAACGTAACGGTCATGATTCAGGTCAGGAATCATTCCC 360 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 AATCCCACCCAGTTTTTGGTGCGTTTTTTTCAACTGTGCCAACAGCGTGTTGTTGTTGTT 420 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GTGGCATTGAATTAAATTTAGTCCACTTGAGAGATATTGAATTGAGCTTCGATTCTTGAT 480 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GCCAAACGAAGGAGAAGCGTGAAATACTTACTAGGAAAAGTACACGAACTGATGATACGC 540 consensus_5422#1 ------------------------------------------------------------ consensus_5422#0 GGGCAATCGCTCCTCTCTACCGATTTTTGGTTAGTAAGCTATACTTCCATCTCTATCACC 600 consensus_5422#1 -----ATCGCCCCNA---GGTGATTTTNGGTTA-CNAGCTATACTTCCATCTCTATCACC 51 ***** ** ****** ***** ************************ consensus_5422#0 TTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCACGCACCCTG 660 consensus_5422#1 TTACCTTACCCAACGTTATTCGGATAAGTTTGTTAGTCTATAACGGCGCCGCGCACCCTG 111 ************************************************** ********* consensus_5422#0 TATTGTGTGATGTTGGCACGTGTTACAGGGTTTTTCAGGAG-CTCCCATAACTTTGGGAC 719 consensus_5422#1 TATTGTGTGATGTTGGCACATGTTACAGGGGTTTTCAGGAGACTCCCATAGCTGTGGGAC 171 ******************* ********** ********** ******** ** ****** consensus_5422#0 ACTTTATTTACTCTTTCTTACGTGAACTAAACCTATTGT-AATGGGAATTGGACTCTATA 778 consensus_5422#1 ACTTTATTTACTCTTTCTTACGTGAACTAAACTTCTTGCGAATGGGAATTGGACTCTATA 231 ******************************** * *** ******************** consensus_5422#0 TCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCC 838 consensus_5422#1 TCACTCCTGTTGGACAAATCTAGTAGGAATTTTCAAAGGAGCCTGTCTAAAAAGGGTGCC 291 ************************************************************ consensus_5422#0 GTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGGGAAGTG 898 consensus_5422#1 GTAGAGTTCCGTTTCCAACAAACGAAATTCACTTCCAATAAGAAAGAGCCAAGG-AAGTG 350 ****************************************************** ***** consensus_5422#0 TCCCACAACTATGAGAGCCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTG 958 consensus_5422#1 TCCCACAACTATGAGAACCCCTCGAAACCCCTGTAAGCATGGGGAATGTGCGTGCGTGTG 410 **************** ******************************************* consensus_5422#0 TTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAA 1018 consensus_5422#1 TTTGAATGTATAATTACACCGCCTAATGTGCTGCTGATGTTTTCGTTGGTCTATTTACAA 470 ************************************************************ consensus_5422#0 CCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTAT 1078 consensus_5422#1 CCAAAAACAGAAAAAGAACAACTACCCTCTAAGTCTCGAATTTCTAAACAGCTCCTCTAT 530 ************************************************************ consensus_5422#0 ATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTTTGAAATA 1138 consensus_5422#1 ATGTATGTGTGTGTACAGTGCAGGTGGGTATGCGCTTCCCGAAGAGATGCTTT-GAAATA 589 ***************************************************** ****** consensus_5422#0 GGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGT 1198 consensus_5422#1 GGCTGTGTGCATTGCTCGCTACTTTCCCGATTTAAAAACGCACCCCCCGTAGTGTGTGGT 649 ************************************************************ consensus_5422#0 ATAAAAACACTTTACAACATAACAAAAACCGCCAAATCTACAATGTACAGAAGAGAACAA 1258 consensus_5422#1 ATAAAAACACTTTACAACATAACAAAAAC-GCCAAATCTACAATGTACAGAAGAGAACAA 708 ***************************** ****************************** consensus_5422#0 AAAACCCCAATCCCCCAAACATACGCACACACAAACGAGTACAATGCTGCGTTCGGTGTT 1318 consensus_5422#1 AAAACCC-AATCCCCCACACATACGCACACACAAA-GAGTACAATGCTGCGTTCGGTGTT 766 ******* ********* ***************** ************************ consensus_5422#0 GCACATGATT-ACATCTC-AACTATATTATCCANAGACGCCCAGCTTAAAAAATCACAAT 1376 consensus_5422#1 GCACATGATTTACATTTTTAGCTATATTAGTC-CAAGCGCC-AGCTTAGAAA-TCACAAT 823 ********** **** * * ******** * * **** ****** *** ******* consensus_5422#0 ACAGGAACCCACTCGCATAG-CAAAAGTGCGCAAATGTTTAAATAATA------------ 1423 consensus_5422#1 ACAGGAACACACTCGCATAGGCAAAAGTGCGCAAAATGTTATAAAATAAATAGGGCATGA 883 ******** *********** ************** *** * **** consensus_5422#0 ------------------------------------------------------------ consensus_5422#1 AATCGCTTTCCTCGTCTCTTCGTTTGAATCGCTACACGGCATCCCGCACACCCAGAGAAA 943 consensus_5422#0 ------------------------------------------------------------ consensus_5422#1 AGGGGTATGAAATGAAAATACAACCATTTGTATGTGTGTGTGTTTGGCCCGAGGGTGTGA 1003 consensus_5422#0 ------------------------------------------------------------ consensus_5422#1 TATAAATAATAACTTCTATATAAATATATATATTTTTTAAACTGATCAATTTCAACACCA 1063 consensus_5422#0 ------------------------------------------------------------ consensus_5422#1 CAATGATAAATGGTGTGTTACAAACCTCTTAACGATTAATTAAATGTGTAAAAGCAAGGA 1123 consensus_5422#0 ------------------------------------------------------------ consensus_5422#1 TAAAATATACATGCATATATATATATACATACATATACGCGCAAACGATTTATACAAAAG 1183 consensus_5422#0 ------------------------------------------------------------ consensus_5422#1 AAAACAAAAATACCTACNAAAGAACGAGGGGGGAAGGCTTCATGAAAAAAAAACAGACCA 1243 consensus_5422#0 ---------------------------------------------- consensus_5422#1 AAACGTAATTTGTAAACTGAGAAATGCCATGGCAATAGAGAGAAAC 1289 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||