These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1064 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGATTAAAACGCTGCCGCATCCCGTCCTTCTGTGGGAACGATGTCATACGAGAGATTGCCTACTGCTACACCGAGGGCAGCTTCTGCGAGGAGTGGATCGGCAATCAGCTGTACCAGAACAGCCGCAACATCATTCTGCCCCCACCGGCGGCACCACCTTCGACCACGACCACGACCACCACAACGACGACCACAACCACGACGACTACGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGGTCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGAAGAACTATCTCTACAATATGCTGCGTATAATCGGTGGAAAAACGAGCCGCCGGGGACAGTGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTTTCTGCGGCGGAACGTTGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGCGGCTCGGTGAGCACAATCTGCAGCAATCGGACGGCACGGAGATTGAGTTCCGCGTCGAGCTGAGCATTAAGCATCCACGGTACGATAAGAAAACGGTCGACAACGATGTGGCACTGCTGAAGCTGCCGCGGGAAGTGGAACGGTCCAACTTTATCGGTTACTCCTGTCTGCCGGAGCGATATCAGGCCCTGCCGACCGGGCACACCTGCACCATCATTGGGTGGGGCAAGAAGCGCCATAACGACGACGCCGGGACGGACATACTGCACGAGGCGGAGGTACCGATCGTACCGAACGAACGGTGCCGGGCGGTGTATCACGACTATACGATCACGAAGAATATGTTCTGCGCCGGGCACAAGCGGGGCCGGATCGATACTTGCGCGGGCGATTCCGGGGGGCCGTTGCTGTGCCGCGATGCGACCAAGCTGAACAGCCCGTGGACGATCTATGGTATTACGAGCTTC] [+] EMBL BM611043 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGATTAAAACGCTGCCGCATCCCGTCCTTCTGTGGGAACGATGTCATACGAGAGATTGCCTACTGCTACACCGAGGGCAGCTTCTGCGAGGAGTGGATCGGCAATCAGCTGTACCAGAACAGCCGCAACATCATTCTGCCCCCACCGGCGGCACCACCTTCGACCACGACCACGACCACCACAACGACGACCACAACCACGACGACTACGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGGTCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGAAGAACTATCTCTACAATATGCTGCGTATAATCGGTGGAAAAACGAGCCGCCGGGGACAGTGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTTTCTGCGGCGGAACGTTGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGCGGCTCGGTGAGCACAATCTGCAGCAA ] [+] EMBL BX618558 [ ACGACGACCACAACCACGACGACTACGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGGTCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTG ] [+] EMBL BX622592 [ CCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGCCGAAGCGATACGGTCCCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGCCCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGAAGAACTATCTCTACAACATGCTGCGTATAATCGGTGGAAAAACGAGCCGCCGGGGACAGTGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTTTCTGCGGCGGAACGTTGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGCGGCTCGGTGAGCACAATCTGCAGCAATCGGACGGCACGGAGATTGAGTTCCGCGTCGAGCTGAGCATTAAGCATCCACGGTACGATAAGAAAACGGTCGACAACGATGTGGCACTGCTGAAGCTGCCGCGGGAAGTGGAACGGTCCAACTTTATCGGTTACTCCTGTCTGCCGGAGCGATATCAGGCCCTGCCGACCGGGCACACCTGCACCATCATTGGGTGGGGCAAGAAGCGCCATAACGACGACGCCGGGACGGACATACTGCACGAGGCGGAGGTACCGATCGTACCGAACGAACGGTGCCGGGCGGTGTATCACGACTATACGATCACGAAGAATATGTTCTGCGCCGGGCACAAGCGGGGCCGGATCGATACTTGCGCGGGCGATTCCGGGGGGCCGTTGCTGTGCCGCGATGCGACCAAGCTGAACAGCCCGTGGACGATCTATGGTATTACGAGCTTC] consensusID : consensus_5425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [CTGTATCGAGATGGAACGGCATTCTCGAACCGCAAAGGGGAGGAGTATCCCGAATCGGACGACCAGGAAGATTGGCGTCCGATTGTCCCACTGTCGAACAGCAGCAAACACGCTGGATTCGCAGCCGATGTATGATGCACAGGCACTGAAGAGAGATGCCTTTCCACACACGACGGAGAAGCTGGCAAATGATTCCAGCAGTACGCAGCGCTATCAACAAGCAGCTGCTGGAGTCCTTCTCCACGGCGACTACGTGNGCGTGGTAGGAGGCTCGAACAGGCGTAAGCGTGAAGTGGATGACGATTCAACGCGAGTACGAGCAGTTCAGTCCAGTGACGCTACGGATGACGGAGCAGTGCCGGGAGGATGCTAAAGTCCGGCCCGGCATTGACACACGCGGCGAACACGCGAGAAAGCAGTCTTCGAGATGCCGCGGAAGGTGGAGAACCCCATATGACAAAGTGGAGCAAGCTGGACCAAGTGTACGGCCAAGTGTACAACGCGAAGATTAAAACGCTGCCGCATCCCGTCCTCTCTGTGCGGAACGCATGTCATACGAGCAGATTGCCTACTGCTACACCGAGGGCA] [+] EMBL AL933554 [CTGTATCGAGATGGAACGGCATTCTCGAACCGCAAAGGGGAGGAGTATCCCGAATCGGACGACCAGGAAGATTGGCGTCCGATTGTCCCACTGTCGAACAGCAGCAAACACGCTGGATTCGCAGCCGATGTATGATGCACAGGCACTGAAGAGAGATGCCTTTCCACACACGACGGAGAAGCTGGCAAATGATTCCAGCAGTACGCAGCGCTATCAACAAGCAGCTGCTGGAGTCCTTCTCCACGGCGACTACGTGNGCGTGGTAGGAGGCTCGAACAGGCGTAAGCGTGAAGTGGATGACGATTCAACGCGAGTACGAGCAGTTCAGTCCAGTGACGCTACGGATGACGGAGCAGTGCCGGGAGGATGCTAAAGTCCGGCCCGGCATTGACACACGCGGCGAACACGCGAGAAAGCAGTCTTCGAGATGCCGCGGAAGGTGGAGAACCCCATATGACAAAGTGGAGCAAGCTGGACCAAGTGTACGGCCAAGTGTACAACGCGAAGATTAAAACGCTGCCGCATCCCGTCCTCTCTGTGCGGAACGCATGTCATACGAGCAGATTGCCTACTGCTACACCGAGGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5425#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGAAGATTAAAACGCTGCCGCATCCCGTCCT 60 consensus_5425#1 ------------------------------------------------------------ consensus_5425#0 TCTGTGGGAACGATGTCATACGAGAGATTGCCTACTGCTACACCGAGGGCAGCTTCTGCG 120 consensus_5425#1 ------------------------------------------------------------ consensus_5425#0 AGGAGTGGATCGGCAATCAGCTGTACCAGAACAGCCGCAACATCATTCTGCCCCCACCGG 180 consensus_5425#1 ------------------------------------------------------------ consensus_5425#0 CGGCACCACCTTCGACCACGACCACGACCACCACAACGACGACCACAACCACGACGACTA 240 consensus_5425#1 ------------------------------------------------------------ consensus_5425#0 CGCCTCGGCCCAGCCGACCGCGAAGGCCACATCCGAATGGGTTGAGTCGAAGCGATACGG 300 consensus_5425#1 ------------------------------------------------------------ consensus_5425#0 TCTCGGTGCCATCCACCCTGTCGGCCCAGATATTCTCCAACCGGCGGGGTCTGCTGCAGC 360 consensus_5425#1 ------------------------------------------------------------ consensus_5425#0 CCGAGTACCTGCCCCAGCCGCTGACCTGCGGTTTGCCGATGGTGCGTGACAAGCCAAAGA 420 consensus_5425#1 ------------------------------------------------CTGTATCGAGAT 12 * * consensus_5425#0 AGAACTATCTCTACAATATGCTGCGTATAATCG-GTGGAAAAACGAGCCGCCGGGGACAG 479 consensus_5425#1 GGAACGGCATTCTCGAACCGCAAAGGGGAGGAGTATCCCGAATCGGACGACCAGGAAGAT 72 **** * * * ** * * * * ** ** * ** ** * * consensus_5425#0 TGGCCCTGGCAGGTGGCCATACTTAATCGGTTTAAGGAGGCTT--TCTGCGGCGGAACGT 537 consensus_5425#1 TGGCGTCCGATTGTCCCACTGTCGAACAGCAGCAAACACGCTGGATTCGCAGCCGATGTA 132 **** * ** * * ** * ** * *** * ** ** ** consensus_5425#0 TGGTCTCTTCGCGCTGGATTCTAACGGCTGCGCATTGCGTGCGCAAACGGCTGTTCGTGC 597 consensus_5425#1 TGATGCACAGGCACTGAAGAGAGATGCCTTTCCAC-ACACGACGGAGAAGCTGG-CAAAT 190 ** * ** *** * * * ** ** * * * **** * consensus_5425#0 GGCTCGGTGAGCACAATCTGCAGCAATCGGACGGCACGGAGATTGAGTTCCGCGTCGAGC 657 consensus_5425#1 GATTCCAGCAGTACGCAGCGCTATCAACAAGCAGCT----GCTGGAGTCCTTCTCCACGG 246 * ** ** ** ** * * * ** * * **** * * * * consensus_5425#0 TGAGCATTAAGCATCCACGGTACGATAAGAAAACGGTCGACAACGATGTGGCACTGCTGA 717 consensus_5425#1 CGA---CTACGTGNGCGTGGTAGGAGGCTCGAACAGGCGTAAGCG---TGAAGTGGATGA 300 ** ** * * **** ** *** * ** * ** ** * *** consensus_5425#0 AGCTGCCGCGGGAAGTGGAACGGTCCAACTTTATCGGTTACTCCTGTCTGCCGGAGCGAT 777 consensus_5425#1 CGATTCAACGCGAGTACGAGCAGTTCAGTCCAGT--GACGCTACGGA-TGACGGAGCAGT 357 * * * ** ** ** * ** ** * * ** * * ** ****** * consensus_5425#0 ATCAGGCCCTGCCGACCGGGCACACCTGCACCATCATTGGGTGGGGCAAGAAGCGCCATA 837 consensus_5425#1 GCCGGG------AGGATGCTAAAGTCCGGCCCGGCATTGACACACGCGGCGAACAC---- 407 * ** * * * * * ** ***** ** * * * consensus_5425#0 ACGACGACGCCGGGACGGACATACTGCACGAGGCGGAGGTACCGATCGTACCGAACGAAC 897 consensus_5425#1 GCGAGAAAGCAGTCTTCGAGATGCCGCGGAAGGTGGAGAACCCCATATGACAAAGTGGAG 467 *** * ** * ** ** * ** *** **** ** ** ** * * * consensus_5425#0 GGTGCCGGGC--GGTGTATCAC-GACTATACGATCACGAAGAATATG----TTCTGCGCC 950 consensus_5425#1 CAAGCTGGACCAAGTGTACGGCCAAGTGTACAA-CGCGAAGATTAAAACGCTGCCGCATC 526 ** ** * ***** * * * *** * * ****** ** * * ** * consensus_5425#0 GGGCACAAGCGGGGCCGGATCGATACTTGCGCGGGCGATTCCGGGGGGCCGTTGCTGTGC 1010 consensus_5425#1 CCGTCCTCTCTGTGCGGAACGCATG-TCATACGAGCAGATT-----GCCTACTGCTACAC 580 * * * * ** * * ** * ** ** * * * **** * consensus_5425#0 CGCGATGCGACCAAGCTGAACAGCCCGTGGACGATCTATGGTATTACGAGCTTC 1064 consensus_5425#1 CGAGG-GCA--------------------------------------------- 588 ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||