These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1143 fasta sequence [TTTTTTTTAATACGCGGACGCCAAACCACCAAAGCCCGTAATTTCCGATGGCGGAATTAGAACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTACAAAAGTTGATCGATTCACCGGTGGCGAA-CTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCACGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTTTGCCAGCCTGCAGACCATCTACCAGCTGCTGAAGCTGCTTAGCCTTTACCAGAACATGGTGATAATGCG-GCACGCGGGCAAACGACCGCAGAAGCTGCAGGAAGAGCACGCAAGCTTTGCGGCACTGCTGTGCGCAACGGACGCGCAGGTGAAAAGCATCCGCCAGTGGCTGGAACAGTTGAGCGTGGTGCTGCAACCGTACGGCATCAGGCAGGATGAGGACCATTTGATTATAGCAGATTTAATACACGTCGATATGCTTCCGTTGTTCGACGATTGGGATCAACACGAGGAGATGATGTGAGGCGGGCGCGCCCCTTGAAGCACGTGCCATTTGATGGTTTATTTTTCCTTGCATTCCTTGATTCTCACAATGTGCTTTACAATTAGCATTTTCTATAAAAATAAAACATCCACAAAAAAAATAACCCCCCCCCCCCC] [+] EMBL CNS09DT7 [TTTTTTTTAATACGCGGACGCCAAACCACCAAAGCCCGTAATTTCCGATGGCGGAATTAGAACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTACAAAAGTTGATCGATTCACCGGTGGCGAA CTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCACGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTTTGCCAGCCTGCAGACCATCTACCAGCTGCTGAAGCTGCTTAGCCTTTACCAGAACATGGTGATAATGCG GCACGCGGGCAAACGACCGCAGAAGCTGCAGGAAGAGCACGCAAGCTTTGCGGCACTGCTGTGCGCAACGGACGCGCAGGTGAAAAGC ] [+] EMBL BM589162 [ ccgGCGGACGCCAAACCATCAAAGCCCGCAATTTCCGATGGCGGAATTAGAACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATCCGGAAGGTATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTACAAAAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACATTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATTTGCTGCACGCGATCAAAAAGCTGGCCCTTGCCAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAACA ] [-] EMBL CNS09DT8 [ GGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGAAACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCACGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTAAACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCCAAAAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATAAGGCGCTTCAATTGCTCGAAACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGACCATCTACCAGCTGCTGAAGCTGCTTAGCCTTTACCAGAACATGGTGATAATGCGCGCACGCCGGCAAACGACCGCAGGAGCTGCAGGAAGAGCACGCAAGCTTTGCGGAACTGCTGTGCGCAACGGACGCGCAGGTGAAAAGCATCCGCCAGTGGCTGGAACAGTTGAGCGTGGTGCTGCAACCGTACGGCATCAGGCAGGATGAGGACCATTTGATTATAGCAGATTTAATACACGTCGATATGCTTCCGTTGTTCGACGATTGGGATCAACACGAGGAGATGATGTGAGGCGGGCGCGCCCCTTGAAGCACGTGCCATTTGATGGTTTATTTTTCCTTGCATTCCTTGATTCTCACAATGTGCTTTACAATTAGCATTTTCTATAAAAATAAAACATCCACAAAAAAAATAACCCCCCCCCCCCC] consensusID : consensus_5433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1137 fasta sequence [AGATCCCCCGAGGTTTNTGCGTCGCAATCGCTAAACCCGACGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTGCAAACAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATGCGTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGTCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGGTGCACTGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGGCCATCTACCAGCTGCTGAAGCTTGNTTAGCCTTTACCAGAACATGGTGATAATGCGGCACGCCGGCAAACGAACCGCAGGAGCTGCAGGAAGAGCCACGCAAGCTTTGCGGGGCACTGCTGTGCGCAACGGACGCGCAGGTGACAAGCATTCCGNCAGTGGCTGGAACAGGTGAGCGTGGTGCTGCAACCGNTACGGGTAATCAGGGCAGGATTGCAGGGACCATCTGGACTTATAGCAGATTNGATAACACGTCGATATGCANTTCCGGTGGGNNCGGAACGGAATTATGGGGNATTCCAACCAACCGCANCGGAANNATTNGAACNGCTTAACNGCCGGGANCNGACANACCCCCTTTGAGAACCCACTGTTTGCCAAGTTGTGAATGGGGCNATCAAGTTCTATTCAAGTGTGGCACATCCCCCTTGGCGATTTCNTCCCACAATATGTNNGCGTCTTAACACAGNTGACCATCTGTG] [+] EMBL AL934465 [AGATCCCCCGAGGTTTNTGCGTCGCAATCGCTAAACCCGACGCTCGATCCGGTGCAATCCGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAAACGTGCAAACAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAGCACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGCTTTGGAACGTTGGAACAGTATGCGTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTCAAGGGAGTGTCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGGCTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTAAAGGAAGACATCCCACTGGAAGGTGTTAATCTGGTGCACTGCGATCAAAAAGCTTGCCCTTGCAAACTCCCCGCAGCTTTACTACACGGCCTGGCACTGATTTTTGCCGGGTTCGATGCGATAACACACCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCTTCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGGCCATCTACCAGCTGCTGAAGCTTGNTTAGCCTTTACCAGAACATGGTGATAATGCGGCACGCCGGCAAACGAACCGCAGGAGCTGCAGGAAGAGCCACGCAAGCTTTGCGGGGCACTGCTGTGCGCAACGGACGCGCAGGTGACAAGCATTCCGNCAGTGGCTGGAACAGGTGAGCGTGGTGCTGCAACCGNTACGGGTAATCAGGGCAGGATTGCAGGGACCATCTGGACTTATAGCAGATTNGATAACACGTCGATATGCANTTCCGGTGGGNNCGGAACGGAATTATGGGGNATTCCAACCAACCGCANCGGAANNATTNGAACNGCTTAACNGCCGGGANCNGACANACCCCCTTTGAGAACCCACTGTTTGCCAAGTTGTGAATGGGGCNATCAAGTTCTATTCAAGTGTGGCACATCCCCCTTGGCGATTTCNTCCCACAATATGTNNGCGTCTTAACACAGNTGACCATCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5433#0 TTTTTTTTAATACGCGGACGCCAAACCACCAAAGCCCGTAATTTCCGATGGCGGAATTAG 60 consensus_5433#1 ----------------------------------------------------------AG 2 ** consensus_5433#0 AACAGTGGCAAGAGTTTGCGTCGCAAATCGCTAAACCCGACCGCTCGATCCGGTGCAATC 120 consensus_5433#1 ATCCCCCG-AGGTTTNTGCGTCGCAA-TCGCTAAACCCGAC-GCTCGATCCGGTGCAATC 59 * * * * * * ********** ************** ****************** consensus_5433#0 CGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAA 180 consensus_5433#1 CGGATGGCATCGGGTTCGGGCAGTTTGCAATCGTTTGCAGTCTTCCGGGAGCACCGGAAA 119 ************************************************************ consensus_5433#0 ACGTACAAA-AGTTGATCGATTCACCGGTGGCGAA-CTTCACAAGCAGACATCAACAGAG 238 consensus_5433#1 ACGTGCAAACAGTTGATCGATTCACCGGTGGCGAAGCTTCACAAGCAGACATCAACAGAG 179 **** **** ************************* ************************ consensus_5433#0 CACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGC 298 consensus_5433#1 CACGACAGCAACACAAGCACGGAGGACATTGTGAAGATTCTTATCGAACAGTTACCCTGC 239 ************************************************************ consensus_5433#0 TTTGGAACGTTGGAACAGTATACTTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTC 358 consensus_5433#1 TTTGGAACGTTGGAACAGTATGCGTGGCTGGTGAGAGCGACGGTCGCATTGCACCTGCTC 299 ********************* * ************************************ consensus_5433#0 AAGGGAGTGCCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGG 418 consensus_5433#1 AAGGGAGTGTCGACGAAGGTGTCCTCCCTGGTGCGGAAGTTGAGCGGGGCTGTCGCGGGG 359 ********* ************************************************** consensus_5433#0 CTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTA 478 consensus_5433#1 CTCGATCTTGCCTGCTTCCGTCATTCTACATTTATGATACACACGGTGGCTAAAAGCTTA 419 ************************************************************ consensus_5433#0 AAGGAAGACATCCCACTGGAAGGTGTTAATCTGCTGCAC-GCGATCAAAAAGCTTGCCCT 537 consensus_5433#1 AAGGAAGACATCCCACTGGAAGGTGTTAATCTGGTGCACTGCGATCAAAAAGCTTGCCCT 479 ********************************* ***** ******************** consensus_5433#0 TGCAAACTCCCCGCAGCTTTACTACACGGCCCTGGCACTGATTTTTGCCGGGTTCGATGC 597 consensus_5433#1 TGCAAACTCCCCGCAGCTTTACTACACGGCC-TGGCACTGATTTTTGCCGGGTTCGATGC 538 ******************************* **************************** consensus_5433#0 GATAACACACCCCAACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCT 657 consensus_5433#1 GATAACACACCC-AACAAACCGATCGCCACGTACCGGGTGTGTGGGGTGAATGAGGCGCT 597 ************ *********************************************** consensus_5433#0 TCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTTTGCCAGCCTGCAGAC 717 consensus_5433#1 TCAATTGCTCGATACACTCGACGCACCGTGGCTTCAGCGGCAGTGTGCCAGCCTGCAGGC 657 ******************************************** ************* * consensus_5433#0 CATCTACCAGCTGCTGAAGCT-GCTTAGCCTTTACCAGAACATGGTGATAATGCGGCACG 776 consensus_5433#1 CATCTACCAGCTGCTGAAGCTTGNTTAGCCTTTACCAGAACATGGTGATAATGCGGCACG 717 ********************* * ************************************ consensus_5433#0 CGGGCAAACGA-CCGCAGAAGCTGCAGGAAGAGC-ACGCAAGCTTTGCGG--CACTGCTG 832 consensus_5433#1 CCGGCAAACGAACCGCAGGAGCTGCAGGAAGAGCCACGCAAGCTTTGCGGGGCACTGCTG 777 * ********* ****** *************** *************** ******** consensus_5433#0 TGCGCAACGGACGCGCAGGTGAAAAGCAT-CCGCCAGTGGCTGGAACAGTTGAGCGTGGT 891 consensus_5433#1 TGCGCAACGGACGCGCAGGTGACAAGCATTCCGNCAGTGGCTGGAACAGGTGAGCGTGGT 837 ********************** ****** *** *************** ********** consensus_5433#0 GCTGCAACCGT-ACGGC--ATCAGG-CAGGAT---GAGGACCATTTGA--TTATAGCAGA 942 consensus_5433#1 GCTGCAACCGNTACGGGTAATCAGGGCAGGATTGCAGGGACCATCTGGACTTATAGCAGA 897 ********** **** ****** ****** ******* ** ********** consensus_5433#0 TTTAATA-CACGTCGATATGC--TTCCGTTGTTCGACGATTGGGATCAACACGAGGAGAT 999 consensus_5433#1 TTNGATAACACGTCGATATGCANTTCCGGTGGGNNCGGAACGGAATTA-TGGGGNATTCC 956 ** *** ************* ***** ** ** ** ** * * consensus_5433#0 GATGTGAGGCGGGCGCGCCCCTTGAAGCACGTGCCATTTGATGGTT--TATTTTTCCTT- 1056 consensus_5433#1 AACCAACCGCANCGGAANNATTNGAACNGCTTAACNGCCGGGANCNGACANACCCCCTTT 1016 * ** * * *** * * * * * **** consensus_5433#0 --GCATTCCTTGATTCTCACAATGTGCTTTACAATTAGCATTTTCTAT--AAAAATAAAA 1112 consensus_5433#1 GAGAACCCACTGTTTGCCAAGTTGTGAAT-GGGGCNATCAAGTTCTATTCAAGTGTGGCA 1075 * * * ** ** ** **** * * ** ****** ** * * consensus_5433#0 CATCCACAAAAAAAATAACCCCCCCCCCCCC----------------------------- 1143 consensus_5433#1 CATCCCCCTTGGCGATTTCNTCCCACAATATGTNNGCGTCTTAACACAGNTGACCATCTG 1135 ***** * ** * *** * consensus_5433#0 -- consensus_5433#1 TG 1137 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||