|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence
[GCAGATCGCCCGAGGNNAAACGAACAACAAAAAAGTGACATTATTGTGACACCCGCATCTTCCATCGTCCCCAACCCTACAACAACCTCCCCCGGCGGCCCCCCTTTGTGTATGTGTAGTTTATGCCATTTTATGTATAGGTATTATAGCTCTCTCGCGCTCTCTTTATCGCTCTCTCTCTCTGTCTCTCTGGTCTCCCTCACTGTCTCCCTGTCTGTTACCAAAGGGCGTTAAGGTGTGTTGTATTGTGTTAAGCCATGTTGAGAAGCCAAGCAAACCATCTACATGGCCCTGTTTCGTCCTCGGACTTTACCACCGCGCCTGTATGTATAGCAAACAGGGTAGTACTTAGGGATGTCGTTATAATGAAGAAAGACGAAGAACGAAGANNGANAGACAGAACGAACGAAGTGGAGCACGATTTCCCGACAGCCTAGCTGTATGCANAGATCGNATGGATGCCAAACGGCAGTGGGTGAACGGTTCAGGGGTAAAAGCAGCCAACAAACTGTAGGTACCAAGCAATTGGGGGCACTAAGGAAGGGCCAAGCACGGGGGGGGGGGNGTGGGATGGAGGGCGGCAGTGGGGGAACTGGTCANACAACGCTTGGACCCGGCAGGCGAGNACGCGGGCGAAATGCCCGAGAACGGAAAGACGCGNGACGCACACTTTAGANGANGTANCCCCCACNACGGCGCGGATGAGGCACGANCGCGGNTNCCGCGACGNNCCCAGNGCCAGGTCNGGAGGTCGGCGNGNNCAGGNCNNGGCNGNGA]
[+] EMBL AL934967 [GCAGATCGCCCGAGGNNAAACGAACAACAAAAAAGTGACATTATTGTGACACCCGCATCTTCCATCGTCCCCAACCCTACAACAACCTCCCCCGGCGGCCCCCCTTTGTGTATGTGTAGTTTATGCCATTTTATGTATAGGTATTATAGCTCTCTCGCGCTCTCTTTATCGCTCTCTCTCTCTGTCTCTCTGGTCTCCCTCACTGTCTCCCTGTCTGTTACCAAAGGGCGTTAAGGTGTGTTGTATTGTGTTAAGCCATGTTGAGAAGCCAAGCAAACCATCTACATGGCCCTGTTTCGTCCTCGGACTTTACCACCGCGCCTGTATGTATAGCAAACAGGGTAGTACTTAGGGATGTCGTTATAATGAAGAAAGACGAAGAACGAAGANNGANAGACAGAACGAACGAAGTGGAGCACGATTTCCCGACAGCCTAGCTGTATGCANAGATCGNATGGATGCCAAACGGCAGTGGGTGAACGGTTCAGGGGTAAAAGCAGCCAACAAACTGTAGGTACCAAGCAATTGGGGGCACTAAGGAAGGGCCAAGCACGGGGGGGGGGGNGTGGGATGGAGGGCGGCAGTGGGGGAACTGGTCANACAACGCTTGGACCCGGCAGGCGAGNACGCGGGCGAAATGCCCGAGAACGGAAAGACGCGNGACGCACACTTTAGANGANGTANCCCCCACNACGGCGCGGATGAGGCACGANCGCGGNTNCCGCGACGNNCCCAGNGCCAGGTCNGGAGGTCGGCGNGNNCAGGNCNNGGCNGNGA]
consensusID : consensus_5446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 447 fasta sequence
[TTGTGTTAAGCCATGTTGAGAAGCCAAGCAAACCATCTACATGGCCCTGTTTCGTCCTCGGACTTTCCCCGCGCCTGTATGTATAGAAAAGGGTAGTATTAGGGATGTCGTTGTAATGAAAAAGACGAAGAAGAAGAAGAAGAAGAAGACAGAACGAACGAAGCAGAGCACGATTTCCCGACACCTAGCTGTATGCAAGATTGATGGATGCCAAACGGAGGGGGGGGAGGGGACTGCAAAACTGCCGTTTGTGAGCGAGATCCACACGAACACACGACTTAGCTTCCCCCAACCCCAACTAGCACCCTTCCCCCCTCCACCACTCCATTGCTACTGTTGTCCAAAGGAGAAAACGGGAAAAGTGGATAGCATAGACCGGCGCAACAAGGATAGTGTATCTGTGTGTGTGTGTGTGTGTGTGTGCGTATGTACGTGTGTGTGTGTGGG]
[+] EMBL BX613939 [TTGTGTTAAGCCATGTTGAGAAGCCAAGCAAACCATCTACATGGCCCTGTTTCGTCCTCGGACTTTCCCCGCGCCTGTATGTATAGAAAAGGGTAGTATTAGGGATGTCGTTGTAATGAAAAAGACGAAGAAGAAGAAGAAGAAGAAGACAGAACGAACGAAGCAGAGCACGATTTCCCGACACCTAGCTGTATGCAAGATTGATGGATGCCAAACGGAGGGGGGGGAGGGGACTGCAAAACTGCCGTTTGTGAGCGAGATCCACACGAACACACGACTTAGCTTCCCCCAACCCCAACTAGCACCCTTCCCCCCTCCACCACTCCATTGCTACTGTTGTCCAAAGGAGAAAACGGGAAAAGTGGATAGCATAGACCGGCGCAACAAGGATAGTGTATCTGTGTGTGTGTGTGTGTGTGTGTGCGTATGTACGTGTGTGTGTGTGGG]
[+] EMBL BM580733 [ ccgGCGAGATCCACACGAACACACGACTTAGCTTCCCCCAACCCCAACTAGCACCCTTCCCCCCTCCACCACTCCATTGCTACTGTTGTCCAAAGGAGAAAACGGGAAAAGTGGATAGCATAGACCGGCGCAACAAGGATAGTGTATCTGTGTGTGTGTGTGTGCGTATGAACGTGTGTg ]
[+] EMBL BX617789 [ AGCTTCCCCCAACCCCAACTAGCACCCTTCCCCCCTCCACCACTCCATTGCTACTGTTGTCCAAAGGAGAAAACGGGAAAAGTGGATAGCATAGACCGGCGCAACAAGGATAGTGTATCTGTGTGTGTGTGTGTGTGTGTGTGCGTATGTACGTGTGTGTGTGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5446#0 GCAGATCGCCCGAGGNNAAACGAACAACAAAAAAGTGACATTATTGTGACACCCGCATCT 60
consensus_5446#1 ------------------------------------------------------------
consensus_5446#0 TCCATCGTCCCCAACCCTACAACAACCTCCCCCGGCGGCCCCCCTTTGTGTATGTGTAGT 120
consensus_5446#1 ------------------------------------------------------------
consensus_5446#0 TTATGCCATTTTATGTATAGGTATTATAGCTCTCTCGCGCTCTCTTTATCGCTCTCTCTC 180
consensus_5446#1 ------------------------------------------------------------
consensus_5446#0 TCTGTCTCTCTGGTCTCCCTCACTGTCTCCCTGTCTGTTACCAAAGGGCGTTAAGGTGTG 240
consensus_5446#1 ------------------------------------------------------------
consensus_5446#0 TTGTATTGTGTTAAGCCATGTTGAGAAGCCAAGCAAACCATCTACATGGCCCTGTTTCGT 300
consensus_5446#1 -----TTGTGTTAAGCCATGTTGAGAAGCCAAGCAAACCATCTACATGGCCCTGTTTCGT 55
*******************************************************
consensus_5446#0 CCTCGGACTTTACCACCGCGCCTGTATGTATAGCAAACAGGGTAGTACTTAGGGATGTCG 360
consensus_5446#1 CCTCGGACTTTCC--CCGCGCCTGTATGTATAGAAAA--GGGTAGTA-TTAGGGATGTCG 110
*********** * ****************** *** ******** ************
consensus_5446#0 TTATAATGAAGAAA--GACGAAGAACGAAGANNGANAGACAGAACGAACGAAGTGGAGCA 418
consensus_5446#1 TTGTAATGAAAAAGACGAAGAAGAAGAAGAAGAAGAAGACAGAACGAACGAAGCAGAGCA 170
** ******* ** ** ****** * * ***************** *****
consensus_5446#0 CGATTTCCCGACAGCCTAGCTGTATGCANAGATCGNATGGATGCCAAACGGCAGTGGGTG 478
consensus_5446#1 CGATTTCCCGACA-CCTAGCTGTATGCAAGATT--GATGGATGCCAAACGGAGGGGGGGG 227
************* ************** * *************** * *** *
consensus_5446#0 AACGGTTCAGGGGTAAAAGCAGCCAACAAACTGTAGGTACCAAGCAATTGGGGGCACTAA 538
consensus_5446#1 AGGGGACTGC-----AAAACTGCCGTTTGTGAGCGAGATCCACACGAACACACG-ACTTA 281
* ** *** * *** * * *** * * * *** *
consensus_5446#0 GGAAGGGCCAAGCACGGGGGGGGGGGNGTGGGATGGAGGGCGGCAGTGGGGGAACTGGTC 598
consensus_5446#1 GCTTCCCCCAACCCCA----------ACTAGCACCCTTCCCCCCTCC------ACCACTC 325
* **** * * * * * * * ** **
consensus_5446#0 ANACAACGCTTGGACCCGGCAGGCGAGNACGCGGGCGAAATGCCCGAGAACGGAAAGACG 658
consensus_5446#1 ---CATTGCTACTGTTGTCCAAAGGAGAAAACGGGAAAAGTGGAT-AGCATAGACCGGCG 381
** *** ** *** * **** ** ** ** * ** * **
consensus_5446#0 CGNGACGCACACTTTAGANGANGTANCCCCCACNACGGCGCGGATGAGGCACGANCGCGG 718
consensus_5446#1 CAACAAGGATAGTGTATCTGTGTGTGTGTGTGTGTGTGTGTGCGT-ATGTACGTGTGTGT 440
* * * * * * ** * * * * * * * *** * *
consensus_5446#0 NTNCCGCGACGNNCCCAGNGCCAGGTCNGGAGGTCGGCGNGNNCAGGNCNNGGCNGNGA 777
consensus_5446#1 GTGTGGG---------------------------------------------------- 447
* *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||