These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [CCGCCCACGCGTCCGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAAACGTATGCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGCGCAGTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC] [+] EMBL BM656026 [CCGCCCACGCGTCCGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAAACGTATGCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGCGCAGTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC] [+] EMBL BX602755 [ TATGCCACTAACGGCTACTGCTTTTGTTGCTACTGTGCGCAATTAACTCGCGAGTGCGCAGTTTTCTTACCAATTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGAGATTGGCTTGTGGCCGATGATCCCTGGCAGGAGCATGCCCGATGCTTTGCGGAGTGCAGTTTCTTGAGGCTCGTGTTTGGCGCCGACACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGATGCCAATACGGCAACCACGCCCAG ] consensusID : consensus_5447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAACGCATGAAACAAGAGCGCGAATGCAAAATATGTTTGACGCAGGAAGC] [+] EMBL AL934999 [CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTTCGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGC ] [+] EMBL BM613080 [ ccgCCTGGACATTGTAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACTTTTCTTACCAATTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGATCTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATGCACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGGCGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACGCTGGCCTCCGAGATTGGCTTGTGGCCGATGATCCCTGGCAGGAGCATGCCCGATGCTTTGCGGAGTGCAGTTTCTTGAGGCTCGTGTTTGGCGCCGACACCGTCGACGAGGTGCTCCGGAACGGGATCGCTGGATTTAAGAACGATGCCAATACGGCAACCACGCCCAGTGCAACGGTTTCCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAACGCATGAAACAAGAGCGCGAATGCAAAATATGTTTGACGCAGGAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5447#0 -----CCGCCCACGCGTC-CGAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTG 54 consensus_5447#1 CCGAGGTAATATAGCATAATCAACAAACAAAACCTCTCCCTGGAGTATCCCTGGACATTG 60 ** * *************************************** consensus_5447#0 TAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAACGTAAGTGTCGCTAA 114 consensus_5447#1 TAAATCCCCTTATACTGCAGTTGCACCATTCCACCATTGCACCAAC-------------- 106 ********************************************** consensus_5447#0 ACGTATGCCGCTAACGGATACTGCTTTTGCTGCAACTGTGCGCAATTAACACGCGAGTGC 174 consensus_5447#1 ------------------------------------------------------------ consensus_5447#0 GCAGTTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGAT 234 consensus_5447#1 ----TTTTCTTACCAACTAGAGTCGTGCCCGTGCTTCCGCGATCATGTCGTCCGCTGGAT 162 ******************************************************** consensus_5447#0 CTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATG 294 consensus_5447#1 CTGGATCGGAAGTGCAACCGGCAGAGATGCCGTACATGCCAGAATTTGCCGTACTCGATG 222 ************************************************************ consensus_5447#0 CACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGG 354 consensus_5447#1 CACGGATCCGATCGTTCGAGAGCTGGCGCTTTGGTCACATGCAAAATCCGACCCGGCTGG 282 ************************************************************ consensus_5447#0 CGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACG 414 consensus_5447#1 CGGTGGCCGGATTCTACTACACCGGCACGGACGATGAGGTGCGCTGCTTCCAATGTGACG 342 ************************************************************ consensus_5447#0 CTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTT 474 consensus_5447#1 CTGGCCTCCGGGATTGGCTTGTGACCGATGATCCCTGGCAGGAGCATGCTCGATGCTTTT 402 ************************************************************ consensus_5447#0 CGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGA 534 consensus_5447#1 CGGAGTGCAGTTTCTTGAGACTAGTGTTTGGCGCCGATACCGTCGACGAGGTGCTCCGGA 462 ************************************************************ consensus_5447#0 ACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTT 594 consensus_5447#1 ACGGGATCGCTGGATTTAAGAACGGTGCCAATACGGCAACCACGCCCAGTGCAACGGTTT 522 ************************************************************ consensus_5447#0 CCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAAC---- 650 consensus_5447#1 CCGGTCCGATCGATGAAACGTCCAGCGAGCTGGCACAACGGTTGAGAGAGGAAAACAAAC 582 ******************************************************** consensus_5447#0 ---------------------------------------------- consensus_5447#1 GCATGAAACAAGAGCGCGAATGCAAAATATGTTTGACGCAGGAAGC 628 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||