These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 931 fasta sequence [CCACGCGTCCGAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCAACCCCAAATAGTCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAACATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTCAAATAACAGCTCGCTCATGCTTGGTGGCAAACTAACGCAAAAGGAACAGATCGTGAAACAAGCTTCTAC] [+] EMBL BM575158 [CCACGCGTCCGAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCAACCCCAAATAGTCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACC ] [+] EMBL BX621132 [ TCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTTTTGTCCCACGACCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAACATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTCAAATAACAGCTCGCTCATGCTTGGTGGCAAACTAACGCAAAAGGAACAGATCGTGAAACAAGCTTCTAC] consensusID : consensus_5449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGCGGACGCGTGGGCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTCGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAGCATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTC] [+] EMBL BM597644 [CCGCGGACGCGTGGGCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTCGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAGCATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTC] consensusID : consensus_5449#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGAAAGTATTCGCAATCGCAATCGATGTTTCCACCGCGCATCCGGTTCATGCTGCGCGATCTGATCGAGTTGCGTAAGAATAACTGGACACCGCGAAAGGTGGCTTTGGTCGAGGGCCCTGCACCGATACAGGAACTGAATCATGACGATGATGTGCTTCCGCCCGGACTCAATCACTTGCGAAATCGAGATCGCGATTACCGCAATATGGATCGCAGTGAGCAACGCGATTGGATAGGCAAGTTTTCGTTAAATTTGCATAATCTGAACGACGGTTTCAACTTACTCAGTGTGTCCAGCCCATCTCCGCTGCTTCCATCAAGCTATAATCAATCGTCAAATGGCTACGGAAATCGTGACCATCGCGATAATGGAGGTGGTGGTGGCGGCGGTGGTAACTATCGCATGCATAATAACCGGAACAACCAGAATAACTATGGCAACAACAATATGCGTTACAACAAACACAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCA] [+] EMBL BM592090 [CCGAAAGTATTCGCAATCGCAATCGATGTTTCCACCGCGCATCCGGTTCATGCTGCGCGATCTGATCGAGTTGCGTAAGAATAACTGGACACCGCGAAAGGTGGCTTTGGTCGAGGGCCCTGCACCGATACAGGAACTGAATCATGACGATGATGTGCTTCCGCCCGGACTCAATCACTTGCGAAATCGAGATCGCGATTACCGCAATATGGATCGCAGTGAGCAACGCGATTGGATAGGCAAGTTTTCGTTAAATTTGCATAATCTGAACGACGGTTTCAACTTACTCAGTGTGTCCAGCCCATCTCCGCTGCTTCCATCAAGCTATAATCAATCGTCAAATGGCTACGGAAATCGTGACCATCGCGATAATGGAGGTGGTGGTGGCGGCGGTGGTAACTATCGCATGCATAATAACCGGAACAACCAGAATAACTATGGCAACAACAATATGCGTTACAACAAACACAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5449#0 CCACGCGTCCGAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTG 60 consensus_5449#1 ------------------------------------------------------------ consensus_5449#2 ------------------------------------------------------------ consensus_5449#0 GGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACT 120 consensus_5449#1 ------------------------------------------------------------ consensus_5449#2 ------------------------------------------------------------ consensus_5449#0 TGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGC 180 consensus_5449#1 ------------------------------------------------------------ consensus_5449#2 ------------------------------------------------------------ consensus_5449#0 AAATGCGTCCAACCCCAAATAGTCTACTGTTTAAAGCTAATAT-GAACATCAAGCCCCAA 239 consensus_5449#1 --------CCGCGGACGCGTGGGCTACTGTTTAAAGCTAATAT-GAACATCAAGCCCCAA 51 consensus_5449#2 --------CCGAAAGTATTCGCAATCGCAATCGATGTTTCCACCGCGCATCCGGTTCATG 52 ** * * * * * * * **** * * consensus_5449#0 CTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGG-AAAGACCAGCTTCAA 298 consensus_5449#1 CTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTCG-AAAGACCAGCTTCAA 110 consensus_5449#2 CTGCGCG-ATCTGATCGAGTTG-CGTAAGAATAACTGGACACCGCGAAAGGTGGCTTTGG 110 **** * **** * *** * * * * * **** * ** **** consensus_5449#0 TGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCA 358 consensus_5449#1 TGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCA 170 consensus_5449#2 TCGAGGGCCCTGCACCGATACAGGAAC-TGAATCATGACGATGATGTGCTTCCGCCCGGA 169 * ** * * * * *** * * * * ** * ** ** * * consensus_5449#0 GCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACG-GGCA 417 consensus_5449#1 GCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACG-GGCA 229 consensus_5449#2 CTCAATCACTTGCGAAATCGA-GATCGCGATTACCGCAATATGGATCGCAGTGAGCAACG 228 * * ** **** * ** * * * ** * * ** **** * * consensus_5449#0 CTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCC 477 consensus_5449#1 CTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCC 289 consensus_5449#2 CGATTGGATAGGCAAGTTTTCGTTAAATTTGCATAATCTGAACGACGGTTTCAACTTACT 288 * **** ** * * * * ** * * ** *** * * consensus_5449#0 CAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTG 537 consensus_5449#1 CAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTG 349 consensus_5449#2 CAGTGTGTCCAGCCCAT-----CTCCGCTGCTTCCATCA-AGCTATAATCAATCGT-CAA 341 *** ** * * * * ** ** *** * * * ** ** * consensus_5449#0 GGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATC 597 consensus_5449#1 GGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATC 409 consensus_5449#2 ATGGCTACGGAAATCGTGACCATCGCGATAA---TGGAGGTGGTGGTGGCGGCGGTGGTA 398 ** * * * * ** * ** ** * * ** * * ** * consensus_5449#0 AGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAA-ACGAAAATGGAAATGCGCAT 656 consensus_5449#1 AGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAA-ACGAAAATGGAAATGCGCAT 468 consensus_5449#2 ACTATCGCA-TGCATAATAACCGGAACAACCAGAATAACTATGGCAACAACAATATGCGT 457 * * * ** * ** ** *** *** ** * * * * ** *** ** * consensus_5449#0 CTGAATAAACATTATACTGATTTGCATCAA--CAACATCACCATCACCATCAGGGTCAAC 714 consensus_5449#1 CTGAATAAACATTATACTGATTTGCATCAA--CAGCATCACCATCACCATCAGGGTCAAC 526 consensus_5449#2 TACAACAAACACAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGT 517 ** ***** * * ** ***** ** * * ** ** * consensus_5449#0 AAAATTTGCAAGGACCGATTGGTG-ATCATGGAAATCGTGAAATGAACGGAGATCGTATG 773 consensus_5449#1 AAAATTTGCAAGGACCGATTGGTG-ATCATGGAAATCGTGAAATGAACGGAGATCGTATG 585 consensus_5449#2 GGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGAC 577 * * ** * ** ** * * ****** * **** * ** consensus_5449#0 ATGAATCATTA--TGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAA 831 consensus_5449#1 ATGAATCATTA--TGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAA 643 consensus_5449#2 TTGGCCCCCCGCTTCAAGCGCAATTTGATGA-CGCCTCCGCA-GAATCCTGTCGAGGAGC 635 ** * * ** * * ** * ** * ** * * * * **** * * * consensus_5449#0 GCTTATTGAACCCAATTAGCGGCGTTACTTCAAATAACAGCTCGCTCATGCTTGGTGGCA 891 consensus_5449#1 GCTTATTGAACCCAATTAGCGGCGTTACTTC----------------------------- 674 consensus_5449#2 TGCAAATGCGTCCA---------------------------------------------- 649 * ** *** consensus_5449#0 AACTAACGCAAAAGGAACAGATCGTGAAACAAGCTTCTAC 931 consensus_5449#1 ---------------------------------------- consensus_5449#2 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||