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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 931 fasta sequence
[CCACGCGTCCGAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCAACCCCAAATAGTCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAACATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTCAAATAACAGCTCGCTCATGCTTGGTGGCAAACTAACGCAAAAGGAACAGATCGTGAAACAAGCTTCTAC]
[+] EMBL BM575158 [CCACGCGTCCGAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCAACCCCAAATAGTCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACC ]
[+] EMBL BX621132 [ TCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTTTTGTCCCACGACCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAACATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTCAAATAACAGCTCGCTCATGCTTGGTGGCAAACTAACGCAAAAGGAACAGATCGTGAAACAAGCTTCTAC]
consensusID : consensus_5449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGCGGACGCGTGGGCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTCGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAGCATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTC]
[+] EMBL BM597644 [CCGCGGACGCGTGGGCTACTGTTTAAAGCTAATATGAACATCAAGCCCCAACTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTCGAAAGACCAGCTTCAATGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCAGCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACGGGCACTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCCCAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTGGGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATCAGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAAACGAAAATGGAAATGCGCATCTGAATAAACATTATACTGATTTGCATCAACAGCATCACCATCACCATCAGGGTCAACAAAATTTGCAAGGACCGATTGGTGATCATGGAAATCGTGAAATGAACGGAGATCGTATGATGAATCATTATGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAAGCTTATTGAACCCAATTAGCGGCGTTACTTC]
consensusID : consensus_5449#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CCGAAAGTATTCGCAATCGCAATCGATGTTTCCACCGCGCATCCGGTTCATGCTGCGCGATCTGATCGAGTTGCGTAAGAATAACTGGACACCGCGAAAGGTGGCTTTGGTCGAGGGCCCTGCACCGATACAGGAACTGAATCATGACGATGATGTGCTTCCGCCCGGACTCAATCACTTGCGAAATCGAGATCGCGATTACCGCAATATGGATCGCAGTGAGCAACGCGATTGGATAGGCAAGTTTTCGTTAAATTTGCATAATCTGAACGACGGTTTCAACTTACTCAGTGTGTCCAGCCCATCTCCGCTGCTTCCATCAAGCTATAATCAATCGTCAAATGGCTACGGAAATCGTGACCATCGCGATAATGGAGGTGGTGGTGGCGGCGGTGGTAACTATCGCATGCATAATAACCGGAACAACCAGAATAACTATGGCAACAACAATATGCGTTACAACAAACACAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCA]
[+] EMBL BM592090 [CCGAAAGTATTCGCAATCGCAATCGATGTTTCCACCGCGCATCCGGTTCATGCTGCGCGATCTGATCGAGTTGCGTAAGAATAACTGGACACCGCGAAAGGTGGCTTTGGTCGAGGGCCCTGCACCGATACAGGAACTGAATCATGACGATGATGTGCTTCCGCCCGGACTCAATCACTTGCGAAATCGAGATCGCGATTACCGCAATATGGATCGCAGTGAGCAACGCGATTGGATAGGCAAGTTTTCGTTAAATTTGCATAATCTGAACGACGGTTTCAACTTACTCAGTGTGTCCAGCCCATCTCCGCTGCTTCCATCAAGCTATAATCAATCGTCAAATGGCTACGGAAATCGTGACCATCGCGATAATGGAGGTGGTGGTGGCGGCGGTGGTAACTATCGCATGCATAATAACCGGAACAACCAGAATAACTATGGCAACAACAATATGCGTTACAACAAACACAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTGGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACTTGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGCAAATGCGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5449#0 CCACGCGTCCGAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGTG 60
consensus_5449#1 ------------------------------------------------------------
consensus_5449#2 ------------------------------------------------------------
consensus_5449#0 GGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGACT 120
consensus_5449#1 ------------------------------------------------------------
consensus_5449#2 ------------------------------------------------------------
consensus_5449#0 TGGCCCCCCGCTTCAAGCGCAATTTGATGACGCCTCCGCAGAATCCTGTCGAGGAGCTGC 180
consensus_5449#1 ------------------------------------------------------------
consensus_5449#2 ------------------------------------------------------------
consensus_5449#0 AAATGCGTCCAACCCCAAATAGTCTACTGTTTAAAGCTAATAT-GAACATCAAGCCCCAA 239
consensus_5449#1 --------CCGCGGACGCGTGGGCTACTGTTTAAAGCTAATAT-GAACATCAAGCCCCAA 51
consensus_5449#2 --------CCGAAAGTATTCGCAATCGCAATCGATGTTTCCACCGCGCATCCGGTTCATG 52
** * * * * * * * **** * *
consensus_5449#0 CTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTGG-AAAGACCAGCTTCAA 298
consensus_5449#1 CTGCCCATATCTTCCTCAATTGGTGGAGGGACTATTGGAGGTCG-AAAGACCAGCTTCAA 110
consensus_5449#2 CTGCGCG-ATCTGATCGAGTTG-CGTAAGAATAACTGGACACCGCGAAAGGTGGCTTTGG 110
**** * **** * *** * * * * * **** * ** ****
consensus_5449#0 TGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCA 358
consensus_5449#1 TGGACCGTCTTTGAGCGAGTTTCCATCGCCTCTAACAACTCGCACACTGCTCAGCGAGCA 170
consensus_5449#2 TCGAGGGCCCTGCACCGATACAGGAAC-TGAATCATGACGATGATGTGCTTCCGCCCGGA 169
* ** * * * * *** * * * * ** * ** ** * *
consensus_5449#0 GCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACG-GGCA 417
consensus_5449#1 GCGTAATGCAGGCCAAATTAACAATAGTGCCTTCCCCGCTGGCAATAACAGTACG-GGCA 229
consensus_5449#2 CTCAATCACTTGCGAAATCGA-GATCGCGATTACCGCAATATGGATCGCAGTGAGCAACG 228
* * ** **** * ** * * * ** * * ** **** * *
consensus_5449#0 CTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCC 477
consensus_5449#1 CTGGTGGAAGCTTTGGTGCACCTGCGGGTAGTGCGATGTCGTCCACTGTTGTCCCACGCC 289
consensus_5449#2 CGATTGGATAGGCAAGTTTTCGTTAAATTTGCATAATCTGAACGACGGTTTCAACTTACT 288
* **** ** * * * * ** * * ** *** * *
consensus_5449#0 CAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTG 537
consensus_5449#1 CAGGAACTCAAAGCGACAATAGCGGCGGTGTCAACATGATGACCACGGGCAGAAGTTCTG 349
consensus_5449#2 CAGTGTGTCCAGCCCAT-----CTCCGCTGCTTCCATCA-AGCTATAATCAATCGT-CAA 341
*** ** * * * * ** ** *** * * * ** ** *
consensus_5449#0 GGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATC 597
consensus_5449#1 GGGGGTCTCAACAGCCTGCCAGTCAAACTATCTCTTCAAATGTAATGAACCACCGTCATC 409
consensus_5449#2 ATGGCTACGGAAATCGTGACCATCGCGATAA---TGGAGGTGGTGGTGGCGGCGGTGGTA 398
** * * * * ** * ** ** * * ** * * ** *
consensus_5449#0 AGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAA-ACGAAAATGGAAATGCGCAT 656
consensus_5449#1 AGCAGCACACTTCACAAGGGCCGCGACAGTTAGGAGGAA-ACGAAAATGGAAATGCGCAT 468
consensus_5449#2 ACTATCGCA-TGCATAATAACCGGAACAACCAGAATAACTATGGCAACAACAATATGCGT 457
* * * ** * ** ** *** *** ** * * * * ** *** ** *
consensus_5449#0 CTGAATAAACATTATACTGATTTGCATCAA--CAACATCACCATCACCATCAGGGTCAAC 714
consensus_5449#1 CTGAATAAACATTATACTGATTTGCATCAA--CAGCATCACCATCACCATCAGGGTCAAC 526
consensus_5449#2 TACAACAAACACAACAACCATCACCATCAGGGCAGTGGAGGCGGCGGTATGAGAGATGGT 517
** ***** * * ** ***** ** * * ** ** *
consensus_5449#0 AAAATTTGCAAGGACCGATTGGTG-ATCATGGAAATCGTGAAATGAACGGAGATCGTATG 773
consensus_5449#1 AAAATTTGCAAGGACCGATTGGTG-ATCATGGAAATCGTGAAATGAACGGAGATCGTATG 585
consensus_5449#2 GGGAATGGCTCGCACTCATCGTCATACGGTGGAAACTCGGGCATGATGAGCAATAAAGAC 577
* * ** * ** ** * * ****** * **** * **
consensus_5449#0 ATGAATCATTA--TGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAA 831
consensus_5449#1 ATGAATCATTA--TGAAACACCATCTCATAATCGTCAGCATATGGATCCATTGAATCAAA 643
consensus_5449#2 TTGGCCCCCCGCTTCAAGCGCAATTTGATGA-CGCCTCCGCA-GAATCCTGTCGAGGAGC 635
** * * ** * * ** * ** * ** * * * * **** * * *
consensus_5449#0 GCTTATTGAACCCAATTAGCGGCGTTACTTCAAATAACAGCTCGCTCATGCTTGGTGGCA 891
consensus_5449#1 GCTTATTGAACCCAATTAGCGGCGTTACTTC----------------------------- 674
consensus_5449#2 TGCAAATGCGTCCA---------------------------------------------- 649
* ** ***
consensus_5449#0 AACTAACGCAAAAGGAACAGATCGTGAAACAAGCTTCTAC 931
consensus_5449#1 ----------------------------------------
consensus_5449#2 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||