These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence [CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAATATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTGGGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTACCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGACTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTANCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGGAAAACGTGAATCTGGCTTAAATTTAATGGTCATTGGCTGCCCTGATAAACGTGATAAGTTCTAGNTTCTTACAGT] [+] EMBL BX624357 [CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAATATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTGGGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTACCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGACTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTANCATAG ] [+] EMBL BX627719 [ GTGGAAAATATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTGGGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTACCAAGAAAATGGGATAACATTCCAACAGAAAAAGGTCTAACGTTTGCTGCTCTTCGAAGACTTTTTAGAAAATACGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGGAAAACGTGAATCTGGCTTAAATTTAATGGTCATTGGCTGCCCTGATAAACGTGATAAGTTCTAGNTTCTTACAGT] consensusID : consensus_5451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [CCGGGACGGCAGAATGGAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGTAGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAG-AAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGAAAACGTGAATCTGGCTTAAATTTAAATGGT] [+] EMBL BM575319 [CCGGGACGGCAGAATGGAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGTAGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAG AAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAA ] [+] EMBL BM649391 [ ccgAGCAAACGTAGCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGCGTGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAACAACCAGCGCGCTGCGACCGAGGTAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAGTTCCGTGTATCCTACAGAAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCTGCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTCGCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGGTTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGATGAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTGTAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAGATTCAGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGACGTGAAAACGTGAATCTGGCTTAAATTTAAATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5451#0 CGGACTTCAAATTACGTTGGTCTTGCCTATACGGGAACGATTTAGAAGATTGTGGAAAAT 60 consensus_5451#1 ------------------------------------------------------------ consensus_5451#0 ATTGCATTCGCCCAATACGACAGCTGTTTGCAATTTCATTGCATTGAGCAGTATGGATTG 120 consensus_5451#1 --------------------------------------------CCGGGACGGCAGAATG 16 * * ** ** consensus_5451#0 GGCACAGAATAATCTATCCTATCCAAAACAGGGTACTTTTGTGTTTTCTCACCATTTGTA 180 consensus_5451#1 GAGAAGAAACAGTTGTGCGTTTTTCAATCAGTATCAGCATAAGT------AGCAAACGTA 70 * * ** * * * * * ** *** * * ** * ** *** consensus_5451#0 CCAAGAAAATGGGATAACATTCCAA---CAGAAAAAGGTCTAACGTTTGCTGCTCTTCGA 237 consensus_5451#1 GCAAACAAACAAATTTTCACGTCGAGCTCAGTGTGGAATGGAGTGTGTGTGAATGTGTGC 130 *** *** * ** * * *** * * ** ** * * * consensus_5451#0 AGACTTTTTAGAAAATACGTNGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAA 297 consensus_5451#1 G------TGATACACCGTGTTGAATGTAGGTGTAGTGTATAATTTACCGTAATTTTCGAA 184 * * * * ** *************************************** consensus_5451#0 CAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAG 357 consensus_5451#1 CAACCAGCGCGCTGCGACCGAGGCAGCGGCCATCGTCAAACATCATCCCACTTTAGGGAG 244 ************************************************************ consensus_5451#0 TTCCGTGTATTCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCCTCAAGCCTCT 417 consensus_5451#1 TTCCGTGTATCCTACAGAAAAAAAAACTCCGCAGTGCATCTTCAATAGCTTCAAGCATCT 304 ********** ************************************** ****** *** consensus_5451#0 GCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTC 477 consensus_5451#1 GCCAAGTGAATCGTTGTTTTCAATTGAAAATCGTCAAGTTCTACGTGTGATATTTGTTTC 364 ************************************************************ consensus_5451#0 GCTANCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGG 537 consensus_5451#1 GCTACCATAGCAACAGGCGAGAACGCAAGATTGTGGGATTCATCTTAAGCGAAAAGATGG 424 **** ******************************************************* consensus_5451#0 TTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGAT 597 consensus_5451#1 TTGTGCAAGTTTTTACGCTCCCATATCTGTGAAACACCGAATAACGGCAGCTTGGCCGAT 484 ************************************************************ consensus_5451#0 GAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTG 657 consensus_5451#1 GAAACGTATTACGCGAACCCCCTGATTAGCTCAATCAATTTAAAGATACCTGTGTCGGTG 544 ************************************************************ consensus_5451#0 TAATGAGACGGCTTCTTTATTGCAGAACAATTACAGAAAATCTTACCAGCGATAAGATTC 717 consensus_5451#1 TAATGAGACGGCTTCTTTATTGCAGGAGAATTACAGTAAATCTTACCAGCGATAAGATTC 604 ************************* * ******** *********************** consensus_5451#0 AGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGAC 777 consensus_5451#1 AGCAACCGTTTTACGCATGATAGTGCACGATAAACCAATCCATATAAGTCAATAAGTGAC 664 ************************************************************ consensus_5451#0 GTGGAAAACGTGAATCTGGCTTAAATTTAA-TGGTCATTGGCTGCCCTGATAAACGTGAT 836 consensus_5451#1 GTG-AAAACGTGAATCTGGCTTAAATTTAAATGGT------------------------- 698 *** ************************** **** consensus_5451#0 AAGTTCTAGNTTCTTACAGT 856 consensus_5451#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||