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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 978 fasta sequence
[TTGGGCCGATGATCTTGATTTGGACCTCAGCAATGAGCTCTCCAGCAACGGATACATTAGTGATTCGCTGTTGAATTTCCCTGTGTTCAAGCAAGAACTTCCATCTCCTCCTCAGAAGCATTCTCATCATCAGCAACACTCTCAACAACAACAACAACAACAGCAACAACAACATCAACTCCATCAACAACAGCAGCAAAGTTTGCACCAGCAGGCTGCTACTACTGCCGCTGCCGCTGGAATGTAGAAGGCTAAACACAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGAACGGCGAGATTCATTTCTCCTTTCCTTT-CCTGTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAAATCCCTTACCGATTGATAGCAACAAATAGCAACCATTCAACAGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCGCACGAACACGAGAGGTGCATACNATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTATTGCACAGTGCACAGATGCTTATTG]
[+] EMBL BX628797 [TTGGGCCGATGATCTTGATTTGGACCTCAGCAATGAGCTCTCCAGCAACGGATACATTAGTGATTCGCTGTTGAATTTCCCTGTGTTCAAGCAAGAACTTCCATCTCCTCCTCAGAAGCATTCTCATCATCAGCAACACTCTCAACAACAACAACAACAACAGCAACAACAACATCAACTCCATCAACAACAGCAGCAAAGTTTGCACCAGCAGGCTGCTACTACTGCCGCTGCCGCTGGAATGTAGAAGGCTAAACACAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGAACGGCGAGATTCATTTCTCCTTTCCTTT CCTGTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAAATCCCTTACCGATTGATAGCAACAAATAGCAACCATTCAACAGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCGCACGAACACGAGAGGTGCATACNATAGGAGCATAAAACACGGTACCGTATACCGTTTA ]
[+] EMBL BM606938 [ ccGCGAGGACGGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAAC AAAAATCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTATTGCACAGTGCACAGATGCTTATTG]
consensusID : consensus_5470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[CCGCGGACGCGTGGGCAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGGACGGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAATCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTAC]
[+] EMBL BM594909 [CCGCGGACGCGTGGGCAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGGACGGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGTTGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTAACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGACAAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAGTTTAAAACAAACAAAAATCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCGTGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACTGAAGGTACCCGTGAGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTATTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGCCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTAC]
consensusID : consensus_5470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTACTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGTCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTAGTGCACAGAAGCTTATTGGAAACGAAATTATTCTTCAAAACACGCAAAAATGACGGAGAAACAAAACTCTAAGCAAACAATTTCAATTCCACCACAAGCGAGAAACTTCTGCAGCATGCAAACAAACAAAAATCAAATTACTTTAACGAAATCCTGTAGCAGTAGAGATTAAAATTCGAATAAAGCATACTGTTATTTAGAGTAAGGAATCTGTAAAGTGATATAAGCGTAGGGAGGAAAAGAAAAGCCACAGCTAAACGTGTTTAACCCTCCC]
[+] EMBL BM576475 [CCGCCCACGCGTCCGCCCACGCGTCCGGCATAAAACACGGTACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTTACTTTGTTGTTTACGTTACTTGATAGCAACTGCCGAATGTATGTCCCCATAACAGTATGTGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTAGTGCACAGAAGCTTATTGGAAACGAAATTATTCTTCAAAACACGCAAAAATGACGGAGAAACAAAACTCTAAGCAAACAATTTCAATTCCACCACAAGCGAGAAACTTCTGCAGCATGCAAACAAACAAAAATCAAATTACTTTAACGAAATCCTGTAGCAGTAGAGATTAAAATTCGAATAAAGCATACTGTTATTTAGAGTAAGGAATCTGTAAAGTGATATAAGCGTAGGGAGGAAAAGAAAAGCCACAGCTAAACGTGTTTAACCCTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5470#0 TTGGGCCGATGATCTTGATTTGGACCTCAGCAATGAGCTCTCCAGCAACGGATACATTAG 60
consensus_5470#1 ------------------------------------------------------------
consensus_5470#2 ------------------------------------------------------------
consensus_5470#0 TGATTCGCTGTTGAATTTCCCTGTGTTCAAGCAAGAACTTCCATCTCCTCCTCAGAAGCA 120
consensus_5470#1 ------------------------------------------------------------
consensus_5470#2 ------------------------------------------------------------
consensus_5470#0 TTCTCATCATCAGCAACACTCTCAACAACAACAACAACAACAGCAACAACAACATCAACT 180
consensus_5470#1 ------------------------------------------------------------
consensus_5470#2 ------------------------------------------------------------
consensus_5470#0 CCATCAACAACAGCAGCAAAGTTTGCACCAGCAGGCTGCTACTACTGCCGCTGCCGCTGG 240
consensus_5470#1 ------------------------------------------------------------
consensus_5470#2 ------------------------------------------------------------
consensus_5470#0 AATGTAGAAGGCTAAACACAGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGAAC 300
consensus_5470#1 -CCGCGGACGCGTGGGC--AGGCTGTTAGTTATACGCGCGACACTAATCCCAGCGAGGAC 57
consensus_5470#2 -------------CCGCCCACGCGTCCGCCCACGCGTCCGGCATAAAACACGGTACCGTA 47
* * ** * ** ** ** ** * * *
consensus_5470#0 GGCGAGATTCATTTCTCCTTTCCTTTCCTGTTT-GTTATATCAAACGAAGTTGTACCCGT 359
consensus_5470#1 GGCGAGATTCATTTCTCCTTTCCTTTCCCATTTTGTTATATCAAACGAAGTTGTACCCGT 117
consensus_5470#2 TACCG--TTTATTTCTACCCTAATACTACAATTTGTTTGATTA-------CCATTTACTT 98
* ** ****** * * * ** *** ** * * * *
consensus_5470#0 TGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTA 419
consensus_5470#1 TGGCTTAGTCCACCAATTTACATACAATAAAACTAGTATCGCAGAACGCTGAACACGCTA 177
consensus_5470#2 TTACTTTGTT-----GTTTACGTTACTTGATAGCA--ACTGCCGAATGTATGTCCCCATA 151
* *** ** ***** * * * * * * ** *** * * * **
consensus_5470#0 ACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGAC 479
consensus_5470#1 ACGCTACGAACGAACGAACGGATGCGGGCATAAGAACGGAGAGAACGGATTAACAGCGAC 237
consensus_5470#2 ACAGTATGTGTATGTGGCC---CCTGCCCGTCACAACAGCCAATGCTTCTTATC-----C 203
** ** * * * * * * * *** * * * *** * *
consensus_5470#0 AAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAG 539
consensus_5470#1 AAACGGAAACTAACGCAATCGAACCTTATCGACAATTAGCATTGTACTTTACATTGGTAG 297
consensus_5470#2 GGACGCTACCTTACTTAGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGG 263
*** * ** ** * ** * ** *** * * ** ***** *
consensus_5470#0 TTTAAAACAAACAAAAAATCCCTTACCGATTGATAGCAACAAATAGCAACCATTCAACAG 599
consensus_5470#1 TTTAAAACAAACAAAAA-TCCCTTACCGATTGATAGCAACAAATAGTAACCATTCAACCG 356
consensus_5470#2 TTTTT-----TCGACTAGTGCACAGAAGCTTATTGGAAACGAA-ATTATTCTTCAAAACA 317
*** * * * * * * ** * * *** ** * * * * **
consensus_5470#0 TGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACT 659
consensus_5470#1 TGTGACGTCAACTGCAGCATATGAACTAAAACAATTAAATATCCTCAATGTAGACAAACT 416
consensus_5470#2 CGCAAAAATGACGGAGAAACAAAACTCTAAGCA----AACAATTTCAATTCCACCACAAG 373
* * ** * * * * ** ** ** * ***** ** *
consensus_5470#0 GAAGGTACCCGTG-AGCGCACGAACACGAGAGGTGCATACNATAGGAGCATAAAACACGG 718
consensus_5470#1 GAAGGTACCCGTG-AGCACACGAACACGAGAGGTGCATACAATAGGAGCATAAAACACGG 475
consensus_5470#2 CGAGAAACTTCTGCAGCATGCAAACAAACAAAAATCAAATTACTTTAACG-AAATCCTGT 432
** ** ** *** * **** * ** * * * * *** * *
consensus_5470#0 TACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTT 778
consensus_5470#1 TACCGTATACCGTTTATTTCTACCCTAATACTACAATTTGTTTGATTACCATTTACTTTT 535
consensus_5470#2 AGCAGTAGAGATTAAAATTCGAATAAAGCA-TACTGTTATTTAGAGTA--AGGAATCTGT 489
* *** * * * *** * * * *** ** ** ** ** * * * *
consensus_5470#0 ATTTTGTTGTTTACGTTACTTG-ATAGCAACTGCCGAATGTATGCCCCCATAACAGTATG 837
consensus_5470#1 ATTTTGTTGTTTACGTTACTTG-ATAGCAACTGCCGAATGTATGCCCCCATAACAGTATG 594
consensus_5470#2 AAAGTGATATAAGCGTAGGGAGGAAAAGAAAAGCCACAGCTAAACGTGTTTAACCCTCCC 549
* ** * * *** * * * ** *** * ** * **** *
consensus_5470#0 TGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTACCTTACTT 897
consensus_5470#1 TGTATGTGGCCCCTGCCCGTCACAACAGCCAATGCTTCTTATCCGGACGCTAC------- 647
consensus_5470#2 ------------------------------------------------------------
consensus_5470#0 AGCTAAAGCAATATTTCAGTTATCGGCTTTTACAACGTTGGTGGTTTTTTCGACTATTGC 957
consensus_5470#1 ------------------------------------------------------------
consensus_5470#2 ------------------------------------------------------------
consensus_5470#0 ACAGTGCACAGATGCTTATTG 978
consensus_5470#1 ---------------------
consensus_5470#2 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||