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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence
[CCGCCCACGCGTCCGAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTCATCATCGAGTTCGTGTACCGCGGGGAAATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACCGGGTCACGGTCGCCCCCGGACAACCGG-ATCCAGGCACCATCACCACCAGCAACCACCGCCCCCACCAACCACCCTCTGGGGCATCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCGCACGGCAGCGGTGGCAGCAGTGGCGGCAACAGCAGTAACAATAACAACAACAACAGTTCGTCTTCCTCCCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAGGGCGGCAGTGGCGGAGGTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTTTACCATCCCTCACAGCACCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCACCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTCGAGGACGACGATGATGGATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATCGAAGGATAAGCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAATCGCAACAAGCGCACCACCATCCTCACCCGCATCATC]
[+] EMBL BM641921 [CCGCCCACGCGTCCGAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTCATCATCGAGTTCGTGTACCGCGGGGAAATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACCGGGTCACGGTCGCCCCCGGACAACCGG ATCCAGGCACCATCACCACCAGCAACCACCGCCCCCACCAACCACCCTCTGGGGCATCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCGCACGGCAGCGGTGGCAG ]
[+] EMBL BM620403 [ ccgATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACC GGTCACGGTCGCCCCCGGACAACCGGCAT CA GCACCATCACCACCAGCAACCACCGCCCCCACC ACCACCCTCTGGTGCATCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCACACGGCAGCGGTGGCAGCAGTGGCGGCAACAGCAGTAACAATAACAACAACAACAGTTCGTCTTCCTCCCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAGGGCGGCAGTGGCGGAGGTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTTTACCATCCCTCACAGCACCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCACCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTCGAGGACGACGATGATGGATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATCGAAGGATAAGCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAATCGCAACAAGCGCACCACCATCCTCACCCGCATCATC]
consensusID : consensus_5471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CCGCAAATACGTAGTCAAACCAAAAAAAAACACAAAACAAAAAAACAAAACTATACATACAAAGTAAAGAAATAGTCAGTCTGTAAGACACTTTTTAGCGAAATTGCATAGCAAACCTAGAAAAAGAAGAGGTGCAAGGAAAAAAAGAAACATTGAAGCATACAAAAAGGCAAACCATTTGCAACTGACACCAAAAAACAAAACAAATCAAGGGACGGTGCAAACGAGCAAACGTTGCAAAGCCAAACCAAAAGCAGAAAAGGCAGAAAAAAGCTAATAACAAAGTAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTC]
[+] EMBL BM576670 [CCGCAAATACGTAGTCAAACCAAAAAAAAACACAAAACAAAAAAACAAAACTATACATACAAAGTAAAGAAATAGTCAGTCTGTAAGACACTTTTTAGCGAAATTGCATAGCAAACCTAGAAAAAGAAGAGGTGCAAGGAAAAAAAGAAACATTGAAGCATACAAAAAGGCAAACCATTTGCAACTGACACCAAAAAACAAAACAAATCAAGGGACGGTGCAAACGAGCAAACGTTGCAAAGCCAAACCAAAAGCAGAAAAGGCAGAAAAAAGCTAATAACAAAGTAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTC]
consensusID : consensus_5471#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CCGGCGCGCGGTCGGATTCTGTTTGGTCCCGGGCTCGATTCTCTCGTGCGTGTATGTGTGCATAGTGGCAGGCTCGCGGGCGCGTGTATGTGTCTTGTGTGTGCGTGTGTGTATGTGTGTGTGTCACTGCAGGTGGTGTGTGCACTGTCCTGCCGGTTTCCTTGCCGAGACCGTAGCAAAAGAAAAAGGAAAGAAAACATAATTTAAAGCAATCGACAGGAGCGAGCAGCAACCGAATTAGCCAAGACGGACGCGCCCGCGCACTCTCCTCGCCCTGCCAATTGGTCCTGTTTCTCTGTACCGTAATTTTTGCCGTGATGAGTGTCCTGTTGTGAGTGTTCAGCGTAGGGGCCAGCTTTATCCGGTACGTCGGTGCGCCTTGGCTGCACTTTTTTATTTTTTTAATTGGATCAACGCGAGTGTGTCCCCTCGTGTGTGCCTGCGCCGCTTGATTGAGTGTGGTGCCGGGTTTCTTCGGTGAAGCAGCCTGAAAGAGAGAGCTGCAGCTCTGCGGCAGTAAGCGCGATCCTGGGCGCACGGTCAGTGTTTCGCTCGTGCTATAGGAAGAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTA]
[+] EMBL BM597730 [CCGGCGCGCGGTCGGATTCTGTTTGGTCCCGGGCTCGATTCTCTCGTGCGTGTATGTGTGCATAGTGGCAGGCTCGCGGGCGCGTGTATGTGTCTTGTGTGTGCGTGTGTGTATGTGTGTGTGTCACTGCAGGTGGTGTGTGCACTGTCCTGCCGGTTTCCTTGCCGAGACCGTAGCAAAAGAAAAAGGAAAGAAAACATAATTTAAAGCAATCGACAGGAGCGAGCAGCAACCGAATTAGCCAAGACGGACGCGCCCGCGCACTCTCCTCGCCCTGCCAATTGGTCCTGTTTCTCTGTACCGTAATTTTTGCCGTGATGAGTGTCCTGTTGTGAGTGTTCAGCGTAGGGGCCAGCTTTATCCGGTACGTCGGTGCGCCTTGGCTGCACTTTTTTATTTTTTTAATTGGATCAACGCGAGTGTGTCCCCTCGTGTGTGCCTGCGCCGCTTGATTGAGTGTGGTGCCGGGTTTCTTCGGTGAAGCAGCCTGAAAGAGAGAGCTGCAGCTCTGCGGCAGTAAGCGCGATCCTGGGCGCACGGTCAGTGTTTCGCTCGTGCTATAGGAAGAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5471#0 ------------------------------------------------------------
consensus_5471#1 CCGCAAATACGTAGTCAAACCAAAAAAAAACACAAAACAAAAAAACAAAACTATACATAC 60
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 ------------------------------------------------------------
consensus_5471#1 AAAGTAAAGAAATAGTCAGTCTGTAAGACACTTTTTAGCGAAATTGCATAGCAAACCTAG 120
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 ------------------------------------------------------------
consensus_5471#1 AAAAAGAAGAGGTGCAAGGAAAAAAAGAAACATTGAAGCATACAAAAAGGCAAACCATTT 180
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 ------------------------------------------------------------
consensus_5471#1 GCAACTGACACCAAAAAACAAAACAAATCAAGGGACGGTGCAAACGAGCAAACGTTGCAA 240
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 ------------------------------CCGCCCACG-CGTCCGAACAAATCAAAACC 29
consensus_5471#1 AGCCAAACCAAAAGCAGAAAAGGCAGAAAAAAGCTAATAACAAAGTAACAAATCAAAACC 300
consensus_5471#2 --------CCGGCGCGCGGTCGGATTCTGTTTGGTCCCG-GGCTCGATTCTCTCGTGCGT 51
* * **
consensus_5471#0 ATGGATAC-CAAAGCAGCATCAGCG-GGACCCGCCCCGACGCATT-TACCTTCGTCCACA 86
consensus_5471#1 ATGGATAC-CAAAGCAGCATCAGCG-GGACCCGCCCCGACGCATT-TACCTTCGTCCACA 357
consensus_5471#2 GTATGTGTGCATAGTGGCAGGCTCGCGGGCGCGTGTATGTGTCTTGTGTGTGCGTGTGTG 111
* * ** ** *** ** ** * ** * ** * * ***
consensus_5471#0 TATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTA 146
consensus_5471#1 TATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTA 417
consensus_5471#2 TATGTGTGTGTGTCACTGCAGGTGGTGTGTGC---ACTGTCCTGCCGGTTTCCTTGCCGA 168
*** ***** * * * * **** *** ** ** * * * * *
consensus_5471#0 AGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAA 206
consensus_5471#1 AGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAA 477
consensus_5471#2 GACCGTAGCAAAAGAAAAAGGAAAGAAAACATAATTTAAAGCAATCGACAGGAGCGAGCA 228
* * *** * ** * * * * * * * *** * *
consensus_5471#0 TCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTT 266
consensus_5471#1 TCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTT 537
consensus_5471#2 GCAACCGAATTAGCCAAGACGGAC-GCGCCCGCGCACTCTCCTCGCCCTGCCAATTGGTC 287
* ** * * * * * *** * * * * * ****
consensus_5471#0 CTGTCGGCGTGTTCGGCGTACTTT--CAAAAAAATTCTCCTGGACAACCCGTGCAAGCAT 324
consensus_5471#1 CTGTCGGCGTGTTCGGCGTACTTT--CAAAAAA-TTCTCCTGGACAACCCGTGCAAGCAT 594
consensus_5471#2 CTGTTTCTCTGTACCGTAATTTTTGCCGTGATGAGTGTCCTGTTGTGAGTGTTCAGCGTA 347
**** *** * * *** * * * ***** ** **
consensus_5471#0 CCGACCATCATACTGCCGGCCGATA-TATGCTTTTCCGATCTGCAGTTCATCATCGAGTT 383
consensus_5471#1 CCGACCATCATACTGCCGGCCGATA-TATGCTTTTCCGATCTGCAGTTC----------- 642
consensus_5471#2 GGGGCCAGCTTTATCCGGTACGTCGGTGCGCCTTGGCTGCACTTTTTTATTTTTTTAATT 407
* *** * * * * * ** * ** ** * **
consensus_5471#0 CGTGTACCGCGGGGAAATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGC 443
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 GGATCAACGCGAGTGTGTCCCCTCGTGTGTGCCTGCGCCGCTTGATTGAGTGTGG--TGC 465
consensus_5471#0 GGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTA 503
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 CGGGTTTCTTCGGTGAAGCAGCCTGAAAGAGAGAGCTGCAGCTCTGCGGCAGTAA----- 520
consensus_5471#0 CTCGCCCGCACTAAAGCGCTACAAACCGTACCGGGTCACGGTCGCCCCCGGACAACCGGA 563
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ---GCGCGATCCTGGGCGC-ACGGTCAGTGTTTCGCTCGTGCTATAGGAAGAGAGCTTGT 576
consensus_5471#0 TCCAGGCACCATCACCACCAGCAACCACCGCCCCCACCAACCACCCTCTGGGGCATCGGG 623
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 TACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTA-- 634
consensus_5471#0 ATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCGCACGGCAG 683
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 CGGTGGCAGCAGTGGCGGCAACAGCAGTAACAATAACAACAACAACAGTTCGTCTTCCTC 743
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 CCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAGGGCGGCAGTGG 803
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 CGGAGGTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTTTACCATCCCTCACAGCA 863
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 CCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCA 923
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 CCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTCGA 983
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 GGACGACGATGATGGATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATC 1043
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 GAAGGATAAGCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAATCGCAACA 1103
consensus_5471#1 ------------------------------------------------------------
consensus_5471#2 ------------------------------------------------------------
consensus_5471#0 AGCGCACCACCATCCTCACCCGCATCATC 1132
consensus_5471#1 -----------------------------
consensus_5471#2 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||